Wall clock time and date at job start Tue Mar 9 2021 12:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00108 * 2 1 4 4 H 1.09001 * 112.84711 * 341.20042 * 3 2 1 5 5 C 1.53952 * 113.66626 * 112.44091 * 3 2 1 6 6 C 1.53784 * 87.02070 * 139.93604 * 5 3 2 7 7 H 1.08997 * 113.61847 * 89.22843 * 6 5 3 8 8 N 1.46903 * 113.61646 * 220.05155 * 6 5 3 9 9 C 1.46904 * 110.99545 * 288.69710 * 8 6 5 10 10 C 1.39140 * 111.00033 * 164.74490 * 8 6 5 11 11 N 1.32336 * 119.71647 * 359.72172 * 10 8 6 12 12 C 1.32012 * 121.64448 * 179.71379 * 11 10 8 13 13 C 1.37987 * 120.89788 * 0.56943 * 12 11 10 14 14 C 1.50702 * 120.32554 * 179.75037 * 13 12 11 15 15 O 1.42909 * 109.46897 * 244.97296 * 14 13 12 16 16 Si 1.86301 * 109.47363 * 4.97220 * 14 13 12 17 17 C 1.38904 * 119.34780 * 359.72122 * 13 12 11 18 18 C 1.38443 * 118.48434 * 0.02562 * 17 13 12 19 19 F 1.35096 * 120.46836 * 180.02562 * 18 17 13 20 20 C 1.53782 * 113.61615 * 210.00413 * 3 2 1 21 21 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47106 * 299.99851 * 1 2 3 23 23 H 1.08999 * 109.47171 * 59.99444 * 1 2 3 24 24 H 1.08998 * 113.61572 * 25.41844 * 5 3 2 25 25 H 1.09002 * 113.66788 * 254.46011 * 5 3 2 26 26 H 1.08998 * 109.47226 * 53.52833 * 9 8 6 27 27 H 1.08998 * 109.47193 * 293.52361 * 9 8 6 28 28 H 1.09002 * 109.46646 * 173.52752 * 9 8 6 29 29 H 1.07996 * 119.55481 * 180.29509 * 12 11 10 30 30 H 1.09001 * 109.47554 * 124.97667 * 14 13 12 31 31 H 0.96698 * 113.99421 * 59.99649 * 15 14 13 32 32 H 1.48498 * 109.99480 * 58.68094 * 16 14 13 33 33 H 1.48493 * 110.00058 * 180.02562 * 16 14 13 34 34 H 1.08003 * 120.75647 * 180.02562 * 17 13 12 35 35 H 1.08996 * 113.61753 * 105.47093 * 20 3 2 36 36 H 1.08998 * 113.68715 * 334.57634 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7533 1.6511 1.3033 6 6 3.8227 2.3182 0.4222 7 1 3.6236 3.3695 0.2143 8 7 5.1973 2.0780 0.8815 9 6 5.4765 2.8207 2.1178 10 6 6.1179 2.3983 -0.1114 11 7 5.6917 2.8470 -1.2811 12 6 6.5317 3.1675 -2.2478 13 6 7.8943 3.0342 -2.0757 14 6 8.8413 3.3986 -3.1899 15 8 9.5247 2.2259 -3.6368 16 14 7.8802 4.1349 -4.6059 17 6 8.3845 2.5613 -0.8651 18 6 7.4804 2.2380 0.1323 19 9 7.9132 1.7750 1.3254 20 6 3.3755 1.3720 -0.7046 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 3.1163 0.7770 1.8439 25 1 2.2146 2.3514 1.9416 26 1 4.7162 2.5855 2.8626 27 1 5.4628 3.8906 1.9099 28 1 6.4578 2.5370 2.4982 29 1 6.1471 3.5350 -3.1877 30 1 9.5673 4.1259 -2.8265 31 1 8.9393 1.5342 -3.9745 32 1 7.1395 5.3371 -4.1462 33 1 8.8027 4.4980 -5.7114 34 1 9.4467 2.4484 -0.7056 35 1 3.3384 1.8472 -1.6848 36 1 3.9098 0.4219 -0.7147 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10122444_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:10 Heat of formation + Delta-G solvation = -29.339843 kcal Electronic energy + Delta-G solvation = -21093.896431 eV Core-core repulsion = 17689.315602 eV Total energy + Delta-G solvation = -3404.580829 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.98804 -41.90019 -40.42946 -38.51073 -37.53573 -35.64277 -33.49636 -31.76019 -28.27487 -27.85188 -26.46936 -26.23565 -25.24406 -23.75543 -22.59542 -20.64226 -19.05610 -18.80698 -18.24002 -17.58922 -17.43116 -17.05744 -16.65200 -16.23767 -16.17226 -16.03894 -15.77091 -15.38239 -14.97538 -14.77354 -14.40099 -14.31798 -13.92176 -13.73963 -13.32690 -13.01448 -12.89687 -12.74559 -12.74053 -12.16759 -11.99711 -11.75992 -11.56194 -11.17118 -10.76871 -10.67463 -10.55453 -10.36413 -9.19183 -5.15481 -0.27554 -0.05637 1.13271 1.51670 1.86659 2.14466 2.42440 2.89152 3.07315 3.17372 3.33492 3.45695 3.48915 3.62305 3.71111 3.78837 3.93079 3.94138 4.18716 4.24325 4.28919 4.33410 4.42756 4.48770 4.50524 4.59184 4.70951 4.78209 4.80040 4.84594 4.94010 5.05336 5.12139 5.17529 5.21361 5.63115 5.94875 6.32516 6.43488 6.67887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.060 3.940 4 H 0.089 0.911 5 C -0.147 4.147 6 C 0.068 3.932 7 H 0.085 0.915 8 N -0.462 5.462 9 C 0.014 3.986 10 C 0.297 3.703 11 N -0.484 5.484 12 C 0.123 3.877 13 C -0.176 4.176 14 C -0.060 4.060 15 O -0.538 6.538 16 Si 0.686 3.314 17 C -0.060 4.060 18 C 0.034 3.966 19 F -0.122 7.122 20 C -0.109 4.109 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.041 0.959 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.118 0.882 31 H 0.381 0.619 32 H -0.253 1.253 33 H -0.249 1.249 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 1.358 -1.206 3.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.002 3.998 4 H 0.107 0.893 5 C -0.185 4.185 6 C -0.039 4.039 7 H 0.103 0.897 8 N -0.179 5.179 9 C -0.131 4.131 10 C 0.063 3.937 11 N -0.196 5.196 12 C -0.034 4.034 13 C -0.180 4.180 14 C -0.171 4.171 15 O -0.343 6.343 16 Si 0.587 3.413 17 C -0.086 4.086 18 C 0.010 3.990 19 F -0.100 7.100 20 C -0.147 4.147 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.181 0.819 30 H 0.135 0.865 31 H 0.228 0.772 32 H -0.178 1.178 33 H -0.174 1.174 34 H 0.170 0.830 35 H 0.101 0.899 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.112 1.806 -1.439 3.875 hybrid contribution 1.049 0.807 0.852 1.574 sum -2.063 2.613 -0.586 3.381 Atomic orbital electron populations 1.22814 0.81050 1.02948 0.99963 1.87971 1.19720 1.27017 1.94534 1.23593 0.94122 0.85525 0.96575 0.89322 1.23673 0.96075 1.01370 0.97393 1.22820 0.84743 0.98857 0.97504 0.89711 1.59348 1.02789 1.52499 1.03257 1.22675 1.04795 0.95716 0.89961 1.20007 0.88865 0.93239 0.91552 1.67724 1.38471 1.12896 1.00551 1.22447 0.88747 0.95077 0.97127 1.21137 0.95621 1.04359 0.96849 1.24949 0.99134 0.92730 1.00321 1.86532 1.36536 1.27436 1.83798 0.94803 0.83026 0.84521 0.78967 1.21414 1.00878 0.95300 0.91034 1.18110 0.91745 1.05331 0.83846 1.91485 1.89864 1.86284 1.42389 1.23149 0.93910 0.99807 0.97829 0.89570 0.94022 0.93910 0.88148 0.91023 0.89370 0.94053 0.89194 0.81916 0.86509 0.77154 1.17798 1.17379 0.83008 0.89925 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.37 -0.91 10.72 -35.23 -0.38 -1.29 16 3 C 0.06 0.03 4.31 -25.83 -0.11 -0.08 16 4 H 0.09 -0.09 7.87 -51.93 -0.41 -0.50 16 5 C -0.15 -0.01 6.98 -25.83 -0.18 -0.19 16 6 C 0.07 0.04 2.50 -66.89 -0.17 -0.13 16 7 H 0.09 0.03 8.13 -51.93 -0.42 -0.39 16 8 N -0.46 -0.71 4.69 -172.41 -0.81 -1.52 16 9 C 0.01 0.00 9.13 60.07 0.55 0.55 16 10 C 0.30 0.59 6.18 -154.86 -0.96 -0.36 16 11 N -0.48 -0.63 7.86 -12.37 -0.10 -0.72 16 12 C 0.12 -0.07 9.84 -17.57 -0.17 -0.24 16 13 C -0.18 0.11 5.36 -104.47 -0.56 -0.45 16 14 C -0.06 0.09 2.82 36.01 0.10 0.19 16 15 O -0.54 0.44 12.84 -35.23 -0.45 -0.01 16 16 Si 0.69 -1.59 29.83 -169.99 -5.07 -6.66 16 17 C -0.06 -0.03 9.82 -39.26 -0.39 -0.41 16 18 C 0.03 0.06 7.01 -39.10 -0.27 -0.21 16 19 F -0.12 -0.33 14.82 2.25 0.03 -0.29 16 20 C -0.11 -0.11 6.36 -25.91 -0.16 -0.27 16 21 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 22 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 24 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.09 -0.10 7.53 -51.93 -0.39 -0.49 16 27 H 0.04 -0.01 8.13 -51.93 -0.42 -0.43 16 28 H 0.09 0.04 5.81 -51.93 -0.30 -0.27 16 29 H 0.16 -0.50 4.90 -52.49 -0.26 -0.75 16 30 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 31 H 0.38 -1.73 8.70 45.56 0.40 -1.33 16 32 H -0.25 0.02 7.11 56.52 0.40 0.42 16 33 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 34 H 0.15 -0.08 8.06 -52.48 -0.42 -0.50 16 35 H 0.08 0.05 7.91 -51.93 -0.41 -0.36 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 299.99 15.07 4.52 4.52 Total: 0.00 -5.66 299.99 -8.27 -13.93 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -4.79 Total: -7.42 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.23 Total: -0.52 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -0.91 Total: -2.24 kcal Atomic # 8 Polarization: -0.47 SS G_CDS: -0.83 Total: -1.30 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.03 Total: -0.29 kcal Atomic # 14 Polarization: -1.59 SS G_CDS: -5.07 Total: -6.66 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -5.66 -8.27 -13.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10122444_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.413 kcal (2) G-P(sol) polarization free energy of solvation -5.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds