Wall clock time and date at job start Tue Mar 9 2021 12:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00108 * 2 1 4 4 H 1.09001 * 112.84711 * 341.20042 * 3 2 1 5 5 C 1.53952 * 113.66626 * 112.44091 * 3 2 1 6 6 C 1.53784 * 87.02070 * 139.93604 * 5 3 2 7 7 H 1.08997 * 113.61847 * 89.22843 * 6 5 3 8 8 N 1.46903 * 113.61646 * 220.05155 * 6 5 3 9 9 C 1.46904 * 110.99545 * 288.69710 * 8 6 5 10 10 C 1.39140 * 111.00033 * 164.74490 * 8 6 5 11 11 N 1.32336 * 119.71647 * 359.72172 * 10 8 6 12 12 C 1.32012 * 121.64448 * 179.71379 * 11 10 8 13 13 C 1.37987 * 120.89788 * 0.56943 * 12 11 10 14 14 C 1.50702 * 120.32554 * 179.75037 * 13 12 11 15 15 O 1.42909 * 109.46897 * 244.97296 * 14 13 12 16 16 Si 1.86301 * 109.47363 * 4.97220 * 14 13 12 17 17 C 1.38904 * 119.34780 * 359.72122 * 13 12 11 18 18 C 1.38443 * 118.48434 * 0.02562 * 17 13 12 19 19 F 1.35096 * 120.46836 * 180.02562 * 18 17 13 20 20 C 1.53782 * 113.61615 * 210.00413 * 3 2 1 21 21 H 1.09001 * 109.46960 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47106 * 299.99851 * 1 2 3 23 23 H 1.08999 * 109.47171 * 59.99444 * 1 2 3 24 24 H 1.08998 * 113.61572 * 25.41844 * 5 3 2 25 25 H 1.09002 * 113.66788 * 254.46011 * 5 3 2 26 26 H 1.08998 * 109.47226 * 53.52833 * 9 8 6 27 27 H 1.08998 * 109.47193 * 293.52361 * 9 8 6 28 28 H 1.09002 * 109.46646 * 173.52752 * 9 8 6 29 29 H 1.07996 * 119.55481 * 180.29509 * 12 11 10 30 30 H 1.09001 * 109.47554 * 124.97667 * 14 13 12 31 31 H 0.96698 * 113.99421 * 59.99649 * 15 14 13 32 32 H 1.48498 * 109.99480 * 58.68094 * 16 14 13 33 33 H 1.48493 * 110.00058 * 180.02562 * 16 14 13 34 34 H 1.08003 * 120.75647 * 180.02562 * 17 13 12 35 35 H 1.08996 * 113.61753 * 105.47093 * 20 3 2 36 36 H 1.08998 * 113.68715 * 334.57634 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7533 1.6511 1.3033 6 6 3.8227 2.3182 0.4222 7 1 3.6236 3.3695 0.2143 8 7 5.1973 2.0780 0.8815 9 6 5.4765 2.8207 2.1178 10 6 6.1179 2.3983 -0.1114 11 7 5.6917 2.8470 -1.2811 12 6 6.5317 3.1675 -2.2478 13 6 7.8943 3.0342 -2.0757 14 6 8.8413 3.3986 -3.1899 15 8 9.5247 2.2259 -3.6368 16 14 7.8802 4.1349 -4.6059 17 6 8.3845 2.5613 -0.8651 18 6 7.4804 2.2380 0.1323 19 9 7.9132 1.7750 1.3254 20 6 3.3755 1.3720 -0.7046 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 3.1163 0.7770 1.8439 25 1 2.2146 2.3514 1.9416 26 1 4.7162 2.5855 2.8626 27 1 5.4628 3.8906 1.9099 28 1 6.4578 2.5370 2.4982 29 1 6.1471 3.5350 -3.1877 30 1 9.5673 4.1259 -2.8265 31 1 8.9393 1.5342 -3.9745 32 1 7.1395 5.3371 -4.1462 33 1 8.8027 4.4980 -5.7114 34 1 9.4467 2.4484 -0.7056 35 1 3.3384 1.8472 -1.6848 36 1 3.9098 0.4219 -0.7147 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10122444_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:10 Heat of formation + Delta-G solvation = -27.050684 kcal Electronic energy + Delta-G solvation = -21093.797166 eV Core-core repulsion = 17689.315602 eV Total energy + Delta-G solvation = -3404.481563 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.11257 -41.92510 -40.44945 -38.50813 -37.50781 -35.67158 -33.51217 -31.77020 -28.26695 -27.82458 -26.47110 -26.25983 -25.23756 -23.77552 -22.61377 -20.67705 -19.06685 -18.84036 -18.27063 -17.57097 -17.45225 -17.13416 -16.67176 -16.27071 -16.14174 -16.01780 -15.75358 -15.41618 -14.99588 -14.78274 -14.38733 -14.36816 -13.91654 -13.71484 -13.39651 -12.99210 -12.89156 -12.75635 -12.66984 -12.18527 -12.00481 -11.77714 -11.57047 -11.17948 -10.79266 -10.70840 -10.48857 -10.39232 -9.22691 -4.99660 -0.29994 -0.08626 1.26344 1.64067 1.97503 2.13744 2.39892 2.88642 3.05730 3.18326 3.40140 3.46679 3.57808 3.61564 3.74934 3.77313 3.92844 3.93158 4.18717 4.26109 4.34574 4.37750 4.43098 4.55564 4.57603 4.62163 4.73347 4.79727 4.85402 4.85752 4.88049 5.01876 5.06778 5.14447 5.20696 5.60688 5.90654 6.33133 6.64719 6.73505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.060 3.940 4 H 0.107 0.893 5 C -0.141 4.141 6 C 0.072 3.928 7 H 0.090 0.910 8 N -0.475 5.475 9 C 0.016 3.984 10 C 0.286 3.714 11 N -0.493 5.493 12 C 0.125 3.875 13 C -0.170 4.170 14 C -0.064 4.064 15 O -0.553 6.553 16 Si 0.774 3.226 17 C -0.061 4.061 18 C 0.014 3.986 19 F -0.132 7.132 20 C -0.108 4.108 21 H 0.089 0.911 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.189 0.811 30 H 0.115 0.885 31 H 0.397 0.603 32 H -0.278 1.278 33 H -0.295 1.295 34 H 0.158 0.842 35 H 0.086 0.914 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.376 1.856 -1.699 4.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.002 3.998 4 H 0.125 0.875 5 C -0.179 4.179 6 C -0.034 4.034 7 H 0.108 0.892 8 N -0.192 5.192 9 C -0.129 4.129 10 C 0.053 3.947 11 N -0.206 5.206 12 C -0.033 4.033 13 C -0.173 4.173 14 C -0.174 4.174 15 O -0.361 6.361 16 Si 0.679 3.321 17 C -0.088 4.088 18 C -0.010 4.010 19 F -0.110 7.110 20 C -0.146 4.146 21 H 0.108 0.892 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.205 0.795 30 H 0.133 0.867 31 H 0.247 0.753 32 H -0.205 1.205 33 H -0.223 1.223 34 H 0.176 0.824 35 H 0.105 0.895 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.782 2.274 -1.909 4.808 hybrid contribution 1.297 0.657 0.950 1.737 sum -2.485 2.931 -0.959 3.960 Atomic orbital electron populations 1.22952 0.79823 1.03569 1.00874 1.87934 1.21244 1.28188 1.94687 1.23713 0.94117 0.85405 0.96561 0.87487 1.23596 0.95941 1.01008 0.97380 1.22804 0.84435 0.98884 0.97324 0.89247 1.59370 1.03172 1.52980 1.03679 1.22680 1.04804 0.95714 0.89740 1.20131 0.88997 0.93618 0.91983 1.67764 1.38933 1.13295 1.00634 1.22869 0.88725 0.94119 0.97556 1.21225 0.95808 1.03710 0.96606 1.25103 0.99099 0.92728 1.00492 1.86500 1.37654 1.28086 1.83907 0.93769 0.80555 0.82412 0.75348 1.21573 1.01092 0.94966 0.91130 1.18291 0.92172 1.06559 0.83996 1.91453 1.89970 1.86599 1.43012 1.23070 0.94280 0.98859 0.98353 0.89216 0.93170 0.92884 0.89705 0.89435 0.88265 0.93770 0.89895 0.79509 0.86735 0.75315 1.20468 1.22252 0.82392 0.89541 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -2.07 10.72 -148.98 -1.60 -3.67 16 3 C 0.06 0.06 4.31 31.18 0.13 0.19 16 4 H 0.11 -0.32 7.87 -2.39 -0.02 -0.34 16 5 C -0.14 -0.04 6.98 31.18 0.22 0.18 16 6 C 0.07 0.10 2.50 45.44 0.11 0.21 16 7 H 0.09 0.04 8.13 -2.39 -0.02 0.02 16 8 N -0.48 -1.84 4.69 -699.37 -3.28 -5.12 16 9 C 0.02 0.01 9.13 127.69 1.17 1.18 16 10 C 0.29 1.35 6.18 133.08 0.82 2.17 16 11 N -0.49 -1.28 7.86 -193.04 -1.52 -2.80 16 12 C 0.12 -0.21 9.84 84.61 0.83 0.62 16 13 C -0.17 0.27 5.36 -19.76 -0.11 0.17 16 14 C -0.06 0.22 2.82 71.24 0.20 0.43 16 15 O -0.55 1.23 12.84 -148.98 -1.91 -0.69 16 16 Si 0.77 -4.11 29.83 68.60 2.05 -2.07 16 17 C -0.06 -0.08 9.82 22.48 0.22 0.14 16 18 C 0.01 0.07 7.01 22.58 0.16 0.23 16 19 F -0.13 -0.90 14.82 44.97 0.67 -0.24 16 20 C -0.11 -0.27 6.36 31.12 0.20 -0.07 16 21 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 22 H 0.05 -0.14 8.14 -2.38 -0.02 -0.16 16 23 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 24 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.10 -0.20 7.53 -2.39 -0.02 -0.22 16 27 H 0.04 0.00 8.13 -2.39 -0.02 -0.02 16 28 H 0.08 0.17 5.81 -2.39 -0.01 0.16 16 29 H 0.19 -1.41 4.90 -2.91 -0.01 -1.42 16 30 H 0.12 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.40 -3.94 8.70 -74.06 -0.64 -4.59 16 32 H -0.28 0.28 7.11 99.48 0.71 0.98 16 33 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 34 H 0.16 -0.08 8.06 -2.91 -0.02 -0.11 16 35 H 0.09 0.11 7.91 -2.39 -0.02 0.09 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 Total: 0.00 -13.93 299.99 0.08 -13.85 By element: Atomic # 1 Polarization: -6.40 SS G_CDS: 0.49 Total: -5.91 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.19 Total: 6.64 kcal Atomic # 7 Polarization: -3.13 SS G_CDS: -4.80 Total: -7.92 kcal Atomic # 8 Polarization: -0.85 SS G_CDS: -3.51 Total: -4.36 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.67 Total: -0.24 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.05 Total: -2.07 kcal Total: -13.93 0.08 -13.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10122444_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.199 kcal (2) G-P(sol) polarization free energy of solvation -13.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds