Wall clock time and date at job start Tue Mar 9 2021 12:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33319 * 125.95638 * 2 1 4 4 C 1.50702 * 122.71102 * 359.97438 * 3 2 1 5 5 O 1.42896 * 109.46948 * 113.56921 * 4 3 2 6 6 Si 1.86296 * 109.47428 * 233.57268 * 4 3 2 7 7 N 1.32119 * 114.58500 * 180.02562 * 3 2 1 8 8 C 1.29690 * 116.86521 * 0.02562 * 7 3 2 9 9 N 1.38610 * 124.95509 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00246 * 179.97438 * 9 8 7 11 11 H 1.08998 * 112.84959 * 336.19373 * 10 9 8 12 12 C 1.53778 * 113.61159 * 107.49962 * 10 9 8 13 13 C 1.53785 * 87.08056 * 89.11678 * 12 10 9 14 14 H 1.08997 * 113.69040 * 270.86624 * 13 12 10 15 15 C 1.50698 * 113.61389 * 139.97960 * 13 12 10 16 16 C 1.38223 * 119.96951 * 142.50439 * 15 13 12 17 17 C 1.38320 * 120.01302 * 179.97438 * 16 15 13 18 18 Cl 1.73599 * 120.02619 * 179.97438 * 17 16 15 19 19 C 1.38546 * 119.94856 * 0.02562 * 17 16 15 20 20 F 1.35106 * 120.02683 * 179.97438 * 19 17 16 21 21 C 1.38439 * 119.94284 * 359.97438 * 19 17 16 22 22 C 1.38200 * 119.98827 * 0.27732 * 21 19 17 23 23 C 1.53778 * 113.61350 * 204.99773 * 10 9 8 24 24 S 1.70970 * 110.10066 * 0.23753 * 8 7 3 25 25 H 1.09000 * 109.46741 * 84.87949 * 1 2 3 26 26 H 1.08995 * 109.47006 * 204.88038 * 1 2 3 27 27 H 1.09001 * 109.46366 * 324.87886 * 1 2 3 28 28 H 1.09000 * 109.46733 * 353.57107 * 4 3 2 29 29 H 0.96703 * 114.00189 * 60.00276 * 5 4 3 30 30 H 1.48501 * 110.00018 * 180.02562 * 6 4 3 31 31 H 1.48505 * 109.99836 * 301.31619 * 6 4 3 32 32 H 0.97004 * 119.99542 * 359.97438 * 9 8 7 33 33 H 1.08995 * 113.61618 * 334.56814 * 12 10 9 34 34 H 1.09006 * 113.61127 * 203.66286 * 12 10 9 35 35 H 1.07996 * 119.99162 * 359.97438 * 16 15 13 36 36 H 1.08000 * 120.01279 * 180.02562 * 21 19 17 37 37 H 1.07998 * 119.97574 * 179.69539 * 22 21 19 38 38 H 1.09000 * 113.61555 * 156.33575 * 23 10 9 39 39 H 1.09003 * 113.61232 * 25.42862 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7416 2.4829 -0.0006 5 8 2.0697 3.1229 1.2342 6 14 2.4877 3.4405 -1.4138 7 7 3.5851 0.8187 -0.0005 8 6 3.9316 -0.4311 -0.0015 9 7 5.2385 -0.8929 -0.0027 10 6 5.5065 -2.3332 -0.0032 11 1 4.6808 -2.9175 0.4029 12 6 6.0346 -2.8610 -1.3475 13 6 7.4468 -2.5444 -0.8275 14 1 7.7792 -1.5309 -1.0521 15 6 8.4710 -3.5894 -1.1877 16 6 9.7576 -3.2094 -1.5207 17 6 10.6986 -4.1678 -1.8510 18 17 12.3143 -3.6908 -2.2699 19 6 10.3504 -5.5088 -1.8481 20 9 11.2681 -6.4463 -2.1709 21 6 9.0612 -5.8873 -1.5143 22 6 8.1216 -4.9272 -1.1898 23 6 6.8751 -2.7052 0.5910 24 16 2.5413 -1.4262 -0.0085 25 1 -0.3633 0.0917 -1.0236 26 1 -0.3633 -0.9322 0.4323 27 1 -0.3632 0.8406 0.5913 28 1 0.6583 2.4498 -0.1160 29 1 3.0196 3.1876 1.4035 30 1 1.9555 4.8268 -1.4249 31 1 3.9669 3.4659 -1.2851 32 1 5.9756 -0.2624 -0.0032 33 1 5.7376 -2.2533 -2.2022 34 1 5.8538 -3.9251 -1.5002 35 1 10.0281 -2.1638 -1.5231 36 1 8.7887 -6.9323 -1.5113 37 1 7.1147 -5.2223 -0.9341 38 1 6.9243 -3.7267 0.9684 39 1 7.2568 -1.9717 1.3013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10156536_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:21 Heat of formation + Delta-G solvation = 24.881338 kcal Electronic energy + Delta-G solvation = -25391.966450 eV Core-core repulsion = 21369.329293 eV Total energy + Delta-G solvation = -4022.637157 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.055 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.05270 -41.47505 -40.91459 -39.39419 -37.75590 -37.54308 -35.45767 -32.95853 -32.13922 -31.26167 -28.94226 -26.72216 -26.28392 -25.55810 -24.49292 -24.18867 -22.94942 -20.83510 -20.35448 -18.98156 -18.81081 -18.06965 -17.84851 -17.59175 -16.90685 -16.86516 -16.56628 -16.28626 -15.99188 -15.67336 -15.36943 -15.19503 -14.88498 -14.55804 -14.37234 -14.21833 -14.08061 -13.92256 -13.74183 -13.56826 -13.46832 -13.38461 -12.98346 -12.60832 -12.57111 -12.38159 -12.35614 -11.86033 -11.81161 -11.73695 -11.36681 -10.96802 -10.67400 -10.47853 -10.06176 -10.01198 -9.60477 -8.60984 -4.96563 -0.14870 -0.00701 0.01976 0.19334 0.76617 0.92073 1.26106 1.68032 1.78867 1.91434 2.08343 2.31510 3.02553 3.32023 3.38034 3.48462 3.58898 3.63564 3.67401 3.88791 4.02757 4.07332 4.08875 4.15245 4.25971 4.42081 4.52264 4.55200 4.73403 4.78348 4.82964 4.83883 4.85937 4.93235 4.94760 5.02816 5.03887 5.10058 5.16311 5.32141 5.42002 5.64689 5.75442 6.31841 6.35414 6.93975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.250 4.250 3 C 0.056 3.944 4 C -0.043 4.043 5 O -0.542 6.542 6 Si 0.774 3.226 7 N -0.577 5.577 8 C 0.308 3.692 9 N -0.674 5.674 10 C 0.122 3.878 11 H 0.105 0.895 12 C -0.141 4.141 13 C -0.070 4.070 14 H 0.104 0.896 15 C -0.063 4.063 16 C -0.085 4.085 17 C -0.088 4.088 18 Cl -0.066 7.066 19 C 0.077 3.923 20 F -0.143 7.143 21 C -0.136 4.136 22 C -0.076 4.076 23 C -0.125 4.125 24 S 0.134 5.866 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.383 0.617 30 H -0.291 1.291 31 H -0.297 1.297 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.118 0.882 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 -4.231 -0.642 6.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.373 4.373 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.350 6.350 6 Si 0.679 3.321 7 N -0.304 5.304 8 C -0.063 4.063 9 N -0.313 5.313 10 C 0.016 3.984 11 H 0.122 0.878 12 C -0.180 4.180 13 C -0.088 4.088 14 H 0.122 0.878 15 C -0.063 4.063 16 C -0.104 4.104 17 C -0.115 4.115 18 Cl -0.037 7.037 19 C 0.057 3.943 20 F -0.122 7.122 21 C -0.155 4.155 22 C -0.093 4.093 23 C -0.163 4.163 24 S 0.383 5.617 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.232 0.768 30 H -0.218 1.218 31 H -0.224 1.224 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.190 0.810 38 H 0.137 0.863 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.640 -4.385 -0.880 6.444 hybrid contribution 1.766 1.222 0.895 2.326 sum -2.874 -3.163 0.015 4.274 Atomic orbital electron populations 1.20314 0.85326 1.03642 1.04103 1.25487 1.02345 0.93345 1.16148 1.20021 0.86881 0.97448 1.03009 1.24814 1.05646 0.89890 0.95095 1.86535 1.30160 1.80121 1.38139 0.93919 0.77342 0.77440 0.83386 1.66033 1.18072 1.17995 1.28347 1.23506 0.92785 0.91589 0.98450 1.43737 1.01134 1.07025 1.79428 1.22096 0.99146 0.78877 0.98274 0.87756 1.23714 0.93612 1.03554 0.97148 1.21602 0.92441 0.97491 0.97263 0.87794 1.19867 0.93230 0.95081 0.98135 1.21085 0.91897 0.99517 0.97899 1.21228 0.88661 0.93306 1.08333 1.98401 1.21355 1.91944 1.91972 1.17853 0.88554 0.84361 1.03497 1.91517 1.66038 1.64252 1.90367 1.21453 0.90068 1.03085 1.00889 1.21349 1.00727 0.90958 0.96301 1.23450 0.92773 1.04425 0.95628 1.83726 0.95300 1.09174 1.73488 0.88792 0.90669 0.90167 0.84283 0.76767 1.21823 1.22355 0.74844 0.90878 0.86343 0.83189 0.81867 0.80973 0.86346 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.31 9.71 71.24 0.69 1.00 16 2 C -0.25 -0.23 6.57 24.57 0.16 -0.07 16 3 C 0.06 0.22 5.19 41.40 0.21 0.43 16 4 C -0.04 -0.11 2.84 71.24 0.20 0.09 16 5 O -0.54 -3.48 12.88 -148.98 -1.92 -5.40 16 6 Si 0.77 1.86 32.62 68.60 2.24 4.10 16 7 N -0.58 -3.16 9.77 -189.86 -1.85 -5.01 16 8 C 0.31 0.39 8.24 179.32 1.48 1.87 16 9 N -0.67 2.67 5.42 -327.90 -1.78 0.90 16 10 C 0.12 -1.11 4.31 45.52 0.20 -0.91 16 11 H 0.10 -1.02 7.06 -2.39 -0.02 -1.04 16 12 C -0.14 1.48 7.25 31.12 0.23 1.70 16 13 C -0.07 0.68 3.86 -11.01 -0.04 0.63 16 14 H 0.10 -0.97 8.09 -2.39 -0.02 -0.99 16 15 C -0.06 0.41 5.29 -19.86 -0.11 0.30 16 16 C -0.09 0.20 9.49 22.29 0.21 0.41 16 17 C -0.09 -0.21 6.33 22.36 0.14 -0.07 16 18 Cl -0.07 -0.33 28.62 -2.72 -0.08 -0.41 16 19 C 0.08 0.20 7.28 22.39 0.16 0.36 16 20 F -0.14 -0.97 16.84 44.97 0.76 -0.22 16 21 C -0.14 0.53 10.03 22.31 0.22 0.75 16 22 C -0.08 0.61 8.62 22.27 0.19 0.80 16 23 C -0.12 1.36 7.29 31.12 0.23 1.59 16 24 S 0.13 -0.19 21.69 -56.49 -1.23 -1.42 16 25 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.08 -0.33 7.17 -2.39 -0.02 -0.35 16 28 H 0.14 -0.22 6.33 -2.39 -0.02 -0.23 16 29 H 0.38 1.38 8.70 -74.06 -0.64 0.73 16 30 H -0.29 -2.24 7.11 99.48 0.71 -1.54 16 31 H -0.30 -2.89 7.11 99.48 0.71 -2.18 16 32 H 0.41 -1.82 8.83 -92.71 -0.82 -2.64 16 33 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.12 -1.64 6.29 -2.38 -0.02 -1.65 16 35 H 0.15 -0.70 8.05 -2.91 -0.02 -0.72 16 36 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 37 H 0.17 -2.51 6.64 -2.91 -0.02 -2.53 16 38 H 0.12 -1.57 7.73 -2.39 -0.02 -1.59 16 39 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 Total: 0.00 -17.10 359.85 0.03 -17.07 By element: Atomic # 1 Polarization: -18.21 SS G_CDS: -0.29 Total: -18.50 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 4.18 Total: 8.89 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -3.63 Total: -4.12 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -1.92 Total: -5.40 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.76 Total: -0.22 kcal Atomic # 14 Polarization: 1.86 SS G_CDS: 2.24 Total: 4.10 kcal Atomic # 16 Polarization: -0.19 SS G_CDS: -1.23 Total: -1.42 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -17.10 0.03 -17.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10156536_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.952 kcal (2) G-P(sol) polarization free energy of solvation -17.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds