Wall clock time and date at job start Tue Mar 9 2021 12:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.47317 * 2 1 4 4 C 1.50698 * 109.47001 * 240.00195 * 2 1 3 5 5 C 1.38606 * 120.71784 * 299.99519 * 4 2 1 6 6 N 1.32281 * 119.19349 * 179.97438 * 5 4 2 7 7 C 1.32485 * 120.74418 * 0.02562 * 6 5 4 8 8 N 1.38401 * 119.22118 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00396 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47175 * 34.99783 * 9 8 7 11 11 C 1.53006 * 109.46998 * 154.99651 * 9 8 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47592 * 300.00035 * 12 11 9 14 14 H 1.09000 * 109.47140 * 300.00346 * 13 12 11 15 15 N 1.46500 * 109.47204 * 180.02562 * 13 12 11 16 16 C 1.39004 * 119.99958 * 85.00078 * 15 13 12 17 17 N 1.32399 * 119.70508 * 179.97438 * 16 15 13 18 18 C 1.31970 * 121.62560 * 180.02562 * 17 16 15 19 19 C 1.38026 * 120.85423 * 359.97438 * 18 17 16 20 20 C 1.38889 * 119.32772 * 0.02562 * 19 18 17 21 21 C 1.38298 * 118.50686 * 359.73519 * 20 19 18 22 22 C 1.52996 * 109.47165 * 60.00300 * 13 12 11 23 23 C 1.52997 * 109.47204 * 274.99678 * 9 8 7 24 24 N 1.32500 * 121.56610 * 0.27227 * 7 6 5 25 25 C 1.32282 * 120.73597 * 359.44794 * 24 7 6 26 26 H 0.96698 * 114.00299 * 59.99373 * 1 2 3 27 27 H 1.08997 * 109.47605 * 119.99742 * 2 1 3 28 28 H 1.48501 * 109.99914 * 298.68254 * 3 2 1 29 29 H 1.48498 * 110.00229 * 60.00040 * 3 2 1 30 30 H 1.07999 * 120.40202 * 359.96457 * 5 4 2 31 31 H 0.97001 * 119.99722 * 359.97438 * 8 7 6 32 32 H 1.08993 * 109.46955 * 300.00226 * 11 9 8 33 33 H 1.09000 * 109.47050 * 60.00054 * 11 9 8 34 34 H 1.09000 * 109.47160 * 60.00369 * 12 11 9 35 35 H 1.09002 * 109.46719 * 180.02562 * 12 11 9 36 36 H 0.97001 * 119.99882 * 265.00024 * 15 13 12 37 37 H 1.07998 * 119.57735 * 180.02562 * 18 17 16 38 38 H 1.07993 * 120.33251 * 180.02562 * 19 18 17 39 39 H 1.07995 * 120.74407 * 180.02562 * 20 19 18 40 40 H 1.07995 * 120.45400 * 180.28196 * 21 20 19 41 41 H 1.08992 * 109.47534 * 180.02562 * 22 13 12 42 42 H 1.08996 * 109.47134 * 59.99508 * 22 13 12 43 43 H 1.09000 * 109.47140 * 300.00127 * 23 9 8 44 44 H 1.09001 * 109.47230 * 59.99271 * 23 9 8 45 45 H 1.07998 * 120.39671 * 180.24750 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6056 -2.0371 -1.4646 6 7 2.0625 -2.6310 -2.5547 7 6 2.8231 -1.9723 -3.4166 8 7 3.2835 -2.6243 -4.5472 9 6 4.1252 -1.9122 -5.5119 10 1 4.7713 -1.2116 -4.9829 11 6 4.9848 -2.9187 -6.2795 12 6 5.8633 -2.1749 -7.2874 13 6 4.9755 -1.4085 -8.2699 14 1 4.3295 -2.1094 -8.7987 15 7 5.8168 -0.6969 -9.2354 16 6 6.2787 -1.3525 -10.3708 17 7 7.0382 -0.7036 -11.2397 18 6 7.4968 -1.2886 -12.3301 19 6 7.1986 -2.6080 -12.6044 20 6 6.4047 -3.3244 -11.7181 21 6 5.9428 -2.6861 -10.5815 22 6 4.1160 -0.4021 -7.5024 23 6 3.2379 -1.1454 -6.4945 24 7 3.1574 -0.7054 -3.2195 25 6 2.7293 -0.0513 -2.1524 26 1 -0.3934 0.4418 -0.7650 27 1 1.7924 -0.5138 0.8900 28 1 1.5879 2.4586 -1.2242 29 1 1.5616 2.4680 1.2085 30 1 0.9865 -2.5795 -0.7654 31 1 3.0489 -3.5529 -4.7009 32 1 5.6168 -3.4650 -5.5795 33 1 4.3387 -3.6193 -6.8085 34 1 6.5093 -1.4741 -6.7587 35 1 6.4753 -2.8920 -7.8345 36 1 6.0515 0.2318 -9.0823 37 1 8.1142 -0.7280 -13.0164 38 1 7.5788 -3.0785 -13.4990 39 1 6.1575 -4.3581 -11.9099 40 1 5.3271 -3.2146 -9.8689 41 1 3.4833 0.1436 -8.2023 42 1 4.7621 0.2987 -6.9737 43 1 2.5918 -1.8459 -7.0236 44 1 2.6254 -0.4284 -5.9477 45 1 3.0019 0.9824 -1.9992 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10173614_12175864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:26 Heat of formation + Delta-G solvation = 74.442875 kcal Electronic energy + Delta-G solvation = -27023.749268 eV Core-core repulsion = 23236.009812 eV Total energy + Delta-G solvation = -3787.739457 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12673 -41.23432 -39.97371 -38.21523 -37.04384 -34.98630 -34.67647 -33.29629 -32.48939 -31.84566 -30.66839 -28.67976 -26.44613 -25.83972 -24.65730 -24.05051 -23.47455 -23.12127 -22.23785 -21.10437 -19.36276 -18.72879 -18.55872 -18.13278 -17.79305 -16.90619 -16.58071 -16.39527 -16.14240 -15.90792 -15.82995 -15.72180 -15.48899 -15.36118 -14.98361 -14.62385 -14.49148 -14.14224 -14.03121 -13.84778 -13.75927 -13.26634 -13.20136 -12.89048 -12.43054 -12.30258 -12.26256 -12.14817 -12.11341 -11.89764 -11.73606 -11.36414 -11.28464 -10.94246 -10.69132 -10.64922 -10.36313 -10.04747 -9.09789 -8.63938 -4.91652 0.06116 0.14582 0.38573 0.57329 1.31871 1.60231 1.79638 1.98091 2.18766 2.79786 3.02520 3.17021 3.41981 3.55361 3.65739 3.69953 3.72607 3.77388 3.78579 3.94829 4.01172 4.13359 4.15721 4.22887 4.25019 4.35860 4.37474 4.43912 4.44588 4.50592 4.63727 4.66663 4.76530 4.81122 4.88747 4.92022 5.05484 5.10447 5.12616 5.17075 5.20867 5.29351 5.38608 5.45855 5.71793 5.78709 6.05422 6.13024 6.41823 6.48820 6.61973 7.27198 7.28488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.758 3.242 4 C -0.285 4.285 5 C 0.213 3.787 6 N -0.591 5.591 7 C 0.554 3.446 8 N -0.688 5.688 9 C 0.164 3.836 10 H 0.084 0.916 11 C -0.116 4.116 12 C -0.123 4.123 13 C 0.159 3.841 14 H 0.086 0.914 15 N -0.721 5.721 16 C 0.386 3.614 17 N -0.579 5.579 18 C 0.130 3.870 19 C -0.241 4.241 20 C -0.040 4.040 21 C -0.249 4.249 22 C -0.114 4.114 23 C -0.116 4.116 24 N -0.574 5.574 25 C 0.193 3.807 26 H 0.385 0.615 27 H 0.131 0.869 28 H -0.281 1.281 29 H -0.300 1.300 30 H 0.181 0.819 31 H 0.418 0.582 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -1.614 -0.058 2.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.166 4.166 3 Si 0.663 3.337 4 C -0.294 4.294 5 C 0.045 3.955 6 N -0.313 5.313 7 C 0.197 3.803 8 N -0.324 5.324 9 C 0.059 3.941 10 H 0.102 0.898 11 C -0.155 4.155 12 C -0.162 4.162 13 C 0.054 3.946 14 H 0.104 0.896 15 N -0.352 5.352 16 C 0.151 3.849 17 N -0.297 5.297 18 C -0.026 4.026 19 C -0.264 4.264 20 C -0.066 4.066 21 C -0.273 4.273 22 C -0.152 4.152 23 C -0.155 4.155 24 N -0.297 5.297 25 C 0.026 3.974 26 H 0.234 0.766 27 H 0.149 0.851 28 H -0.207 1.207 29 H -0.228 1.228 30 H 0.198 0.802 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.186 0.814 38 H 0.167 0.833 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.845 -0.754 -0.218 2.005 hybrid contribution -1.674 -0.433 0.091 1.731 sum 0.171 -1.187 -0.127 1.206 Atomic orbital electron populations 1.86584 1.18530 1.80203 1.50154 1.24842 0.83190 1.11070 0.97506 0.94322 0.90244 0.72279 0.76857 1.21678 1.07733 0.97914 1.02030 1.23122 0.90341 0.91255 0.90786 1.68004 1.16842 1.40039 1.06411 1.19654 0.87127 0.86049 0.87499 1.44333 1.53998 1.14745 1.19277 1.21015 0.90832 0.94044 0.88176 0.89798 1.21707 0.98301 0.97589 0.97873 1.21896 0.98087 0.99620 0.96630 1.21063 0.90909 0.94195 0.88453 0.89607 1.44640 1.55315 1.14766 1.20479 1.18667 0.89717 0.89352 0.87196 1.67161 1.16061 1.40338 1.06146 1.22792 0.94706 0.93123 0.92001 1.22123 1.04703 0.96223 1.03339 1.21725 0.92392 1.00731 0.91770 1.21659 1.08724 0.94606 1.02353 1.21629 0.98226 0.97734 0.97651 1.21776 0.97993 0.99382 0.96388 1.67982 1.28761 1.08519 1.24388 1.23173 0.88269 0.99663 0.86313 0.76572 0.85099 1.20701 1.22827 0.80191 0.74405 0.90529 0.89828 0.91418 0.91190 0.76120 0.81402 0.83257 0.82793 0.83668 0.90997 0.90648 0.91183 0.92347 0.79757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.13 12.79 -148.98 -1.90 -1.78 16 2 C -0.06 0.19 2.85 71.24 0.20 0.40 16 3 Si 0.76 -3.28 29.87 68.60 2.05 -1.23 16 4 C -0.29 0.35 5.40 -19.69 -0.11 0.25 16 5 C 0.21 0.30 10.92 84.71 0.93 1.23 16 6 N -0.59 -2.89 10.46 -197.99 -2.07 -4.96 16 7 C 0.55 2.18 8.40 261.49 2.20 4.38 16 8 N -0.69 0.42 5.22 -330.43 -1.73 -1.31 16 9 C 0.16 -0.54 2.45 44.99 0.11 -0.43 16 10 H 0.08 -0.04 7.50 -2.39 -0.02 -0.06 16 11 C -0.12 0.73 5.39 30.60 0.16 0.90 16 12 C -0.12 0.59 5.41 30.59 0.17 0.75 16 13 C 0.16 -0.63 2.14 44.99 0.10 -0.54 16 14 H 0.09 -0.38 6.46 -2.39 -0.02 -0.39 16 15 N -0.72 -0.34 5.25 -324.55 -1.70 -2.04 16 16 C 0.39 1.84 7.63 133.06 1.02 2.85 16 17 N -0.58 -4.53 10.39 -193.26 -2.01 -6.54 16 18 C 0.13 0.52 11.17 84.62 0.95 1.47 16 19 C -0.24 -0.25 10.10 22.38 0.23 -0.02 16 20 C -0.04 -0.01 10.17 22.44 0.23 0.22 16 21 C -0.25 -0.38 8.82 22.50 0.20 -0.18 16 22 C -0.11 0.50 5.39 30.58 0.16 0.66 16 23 C -0.12 0.39 5.50 30.58 0.17 0.56 16 24 N -0.57 -1.83 9.20 -197.99 -1.82 -3.65 16 25 C 0.19 -0.11 9.92 84.71 0.84 0.73 16 26 H 0.39 -1.99 8.70 -74.06 -0.64 -2.63 16 27 H 0.13 -0.73 7.96 -2.39 -0.02 -0.75 16 28 H -0.28 0.14 7.11 99.48 0.71 0.85 16 29 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 30 H 0.18 -0.35 8.06 -2.91 -0.02 -0.37 16 31 H 0.42 -1.14 8.72 -92.71 -0.81 -1.95 16 32 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.07 -0.23 7.63 -2.39 -0.02 -0.25 16 36 H 0.40 0.17 8.73 -92.71 -0.81 -0.64 16 37 H 0.17 -0.11 8.06 -2.91 -0.02 -0.14 16 38 H 0.15 -0.53 8.06 -2.91 -0.02 -0.56 16 39 H 0.15 -0.79 8.06 -2.91 -0.02 -0.82 16 40 H 0.15 -0.38 6.05 -2.91 -0.02 -0.40 16 41 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.19 -1.06 5.04 -2.91 -0.01 -1.08 16 Total: 0.00 -17.37 365.07 -2.82 -20.19 By element: Atomic # 1 Polarization: -10.73 SS G_CDS: -1.18 Total: -11.91 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.54 Total: 13.22 kcal Atomic # 7 Polarization: -9.17 SS G_CDS: -9.33 Total: -18.50 kcal Atomic # 8 Polarization: 0.13 SS G_CDS: -1.90 Total: -1.78 kcal Atomic # 14 Polarization: -3.28 SS G_CDS: 2.05 Total: -1.23 kcal Total: -17.37 -2.82 -20.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10173614_12175864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.636 kcal (2) G-P(sol) polarization free energy of solvation -17.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds