Wall clock time and date at job start Tue Mar 9 2021 12:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33329 * 125.95450 * 2 1 4 4 C 1.50701 * 122.70947 * 0.02562 * 3 2 1 5 5 O 1.42898 * 109.47139 * 113.26256 * 4 3 2 6 6 Si 1.86300 * 109.47133 * 233.26140 * 4 3 2 7 7 N 1.32122 * 114.58212 * 179.75314 * 3 2 1 8 8 C 1.29694 * 116.86114 * 0.23895 * 7 3 2 9 9 N 1.38610 * 124.94243 * 180.02562 * 8 7 3 10 10 C 1.46507 * 119.99783 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.46626 * 35.00353 * 10 9 8 12 12 C 1.52995 * 109.46995 * 155.00286 * 10 9 8 13 13 C 1.53002 * 109.47009 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46855 * 299.99911 * 13 12 10 15 15 H 1.09003 * 109.47270 * 300.00076 * 14 13 12 16 16 N 1.46507 * 109.47169 * 180.02562 * 14 13 12 17 17 C 1.38996 * 119.99955 * 154.99871 * 16 14 13 18 18 N 1.32404 * 119.70453 * 179.72632 * 17 16 14 19 19 C 1.31972 * 121.62364 * 179.71366 * 18 17 16 20 20 C 1.38022 * 120.85401 * 0.56458 * 19 18 17 21 21 C 1.38882 * 119.32826 * 359.72627 * 20 19 18 22 22 C 1.38296 * 118.51080 * 359.97438 * 21 20 19 23 23 C 1.52995 * 109.47239 * 60.00230 * 14 13 12 24 24 C 1.52998 * 109.47169 * 275.00380 * 10 9 8 25 25 S 1.70957 * 110.10532 * 0.02562 * 8 7 3 26 26 H 1.09007 * 109.46977 * 84.87609 * 1 2 3 27 27 H 1.08990 * 109.47522 * 204.87941 * 1 2 3 28 28 H 1.09008 * 109.46854 * 324.87830 * 1 2 3 29 29 H 1.09003 * 109.47105 * 353.25837 * 4 3 2 30 30 H 0.96695 * 113.99907 * 59.99956 * 5 4 3 31 31 H 1.48498 * 110.00218 * 179.97438 * 6 4 3 32 32 H 1.48498 * 110.00185 * 301.32013 * 6 4 3 33 33 H 0.96995 * 120.00371 * 0.02562 * 9 8 7 34 34 H 1.08999 * 109.47350 * 300.00361 * 12 10 9 35 35 H 1.09003 * 109.47115 * 60.00301 * 12 10 9 36 36 H 1.08996 * 109.46926 * 59.99875 * 13 12 10 37 37 H 1.08997 * 109.47201 * 180.02562 * 13 12 10 38 38 H 0.97003 * 119.99360 * 335.00109 * 16 14 13 39 39 H 1.07995 * 119.57050 * 180.28874 * 19 18 17 40 40 H 1.07995 * 120.33405 * 179.74938 * 20 19 18 41 41 H 1.08010 * 120.74359 * 180.02562 * 21 20 19 42 42 H 1.08003 * 120.45477 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47379 * 59.99523 * 23 14 13 44 44 H 1.09000 * 109.47443 * 180.02562 * 23 14 13 45 45 H 1.09003 * 109.47270 * 299.99901 * 24 10 9 46 46 H 1.09006 * 109.46952 * 59.99988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 2.0643 3.1200 1.2383 6 14 2.4937 3.4441 -1.4070 7 7 3.5851 0.8188 0.0052 8 6 3.9314 -0.4311 0.0047 9 7 5.2384 -0.8927 0.0101 10 6 5.5065 -2.3330 0.0084 11 1 4.7483 -2.8429 -0.5858 12 6 6.8881 -2.5938 -0.5949 13 6 7.1678 -4.0981 -0.5973 14 6 7.1302 -4.6260 0.8382 15 1 7.8885 -4.1163 1.4328 16 7 7.3987 -6.0663 0.8361 17 6 7.9250 -6.6768 1.9685 18 7 8.1602 -7.9797 1.9620 19 6 8.6643 -8.5971 3.0138 20 6 8.9553 -7.9023 4.1703 21 6 8.7179 -6.5348 4.2203 22 6 8.1949 -5.9143 3.1005 23 6 5.7487 -4.3652 1.4416 24 6 5.4691 -2.8605 1.4441 25 16 2.5413 -1.4261 -0.0035 26 1 -0.3633 0.0918 -1.0236 27 1 -0.3634 -0.9322 0.4323 28 1 -0.3633 0.8406 0.5913 29 1 0.6586 2.4501 -0.1197 30 1 3.0134 3.1843 1.4118 31 1 1.9606 4.8300 -1.4179 32 1 3.9723 3.4692 -1.2720 33 1 5.9755 -0.2622 0.0151 34 1 6.9147 -2.2180 -1.6177 35 1 7.6463 -2.0839 -0.0006 36 1 6.4096 -4.6077 -1.1918 37 1 8.1522 -4.2839 -1.0267 38 1 7.2092 -6.5937 0.0443 39 1 8.8473 -9.6606 2.9706 40 1 9.3638 -8.4167 5.0275 41 1 8.9375 -5.9686 5.1135 42 1 7.9984 -4.8523 3.1048 43 1 4.9905 -4.8748 0.8471 44 1 5.7220 -4.7409 2.4644 45 1 6.2273 -2.3505 2.0385 46 1 4.4848 -2.6746 1.8740 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10173614_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:36 Heat of formation + Delta-G solvation = 57.969744 kcal Electronic energy + Delta-G solvation = -27511.675438 eV Core-core repulsion = 23722.262191 eV Total energy + Delta-G solvation = -3789.413247 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32666 -41.04611 -40.06198 -37.89684 -37.03859 -34.95302 -33.37159 -32.94306 -31.94407 -30.83843 -29.26788 -28.23112 -25.71906 -24.90571 -24.37238 -24.03667 -23.35006 -22.49763 -21.37363 -20.34866 -19.14952 -18.59405 -18.08584 -17.81584 -17.42100 -16.99415 -16.52830 -16.35183 -15.94560 -15.83350 -15.65095 -15.52008 -15.36317 -15.00260 -14.80313 -14.24126 -14.16422 -14.00898 -13.91083 -13.86227 -13.63526 -13.51465 -13.31462 -13.08659 -12.87269 -12.73634 -12.35007 -12.31108 -12.21255 -11.87758 -11.75538 -11.60949 -11.14978 -10.97181 -10.69045 -10.67146 -10.48051 -10.38223 -10.03728 -8.65949 -8.63569 -4.97126 -0.02383 0.16661 0.36452 0.55275 0.74306 1.25081 1.67399 1.77288 1.86773 2.06859 2.18603 3.00620 3.30492 3.50406 3.54954 3.61809 3.75948 3.90852 3.94244 4.03517 4.05588 4.07729 4.18019 4.23548 4.25972 4.30331 4.39846 4.40305 4.45234 4.50176 4.64283 4.70132 4.79084 4.81890 4.86519 4.92857 5.00387 5.02510 5.06914 5.07649 5.14860 5.19172 5.27714 5.30433 5.43738 5.65394 5.69691 6.11332 6.31508 6.34272 6.61079 6.91445 7.25500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.251 4.251 3 C 0.058 3.942 4 C -0.044 4.044 5 O -0.542 6.542 6 Si 0.776 3.224 7 N -0.576 5.576 8 C 0.310 3.690 9 N -0.685 5.685 10 C 0.153 3.847 11 H 0.083 0.917 12 C -0.113 4.113 13 C -0.116 4.116 14 C 0.157 3.843 15 H 0.086 0.914 16 N -0.719 5.719 17 C 0.387 3.613 18 N -0.577 5.577 19 C 0.131 3.869 20 C -0.241 4.241 21 C -0.042 4.042 22 C -0.249 4.249 23 C -0.125 4.125 24 C -0.128 4.128 25 S 0.121 5.879 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.384 0.616 31 H -0.289 1.289 32 H -0.296 1.296 33 H 0.414 0.586 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.405 0.595 39 H 0.170 0.830 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -2.483 -1.743 3.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.072 4.072 4 C -0.155 4.155 5 O -0.349 6.349 6 Si 0.680 3.320 7 N -0.303 5.303 8 C -0.062 4.062 9 N -0.325 5.325 10 C 0.048 3.952 11 H 0.101 0.899 12 C -0.151 4.151 13 C -0.154 4.154 14 C 0.052 3.948 15 H 0.104 0.896 16 N -0.351 5.351 17 C 0.151 3.849 18 N -0.295 5.295 19 C -0.025 4.025 20 C -0.264 4.264 21 C -0.067 4.067 22 C -0.274 4.274 23 C -0.164 4.164 24 C -0.167 4.167 25 S 0.370 5.630 26 H 0.112 0.888 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.157 0.843 30 H 0.232 0.768 31 H -0.217 1.217 32 H -0.223 1.223 33 H 0.252 0.748 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.241 0.759 39 H 0.187 0.813 40 H 0.167 0.833 41 H 0.170 0.830 42 H 0.161 0.839 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.256 -2.917 -2.673 3.965 hybrid contribution 0.918 1.355 1.730 2.382 sum 1.174 -1.562 -0.943 2.169 Atomic orbital electron populations 1.20309 0.85324 1.03596 1.04109 1.25466 1.02298 0.93183 1.16445 1.20061 0.86897 0.97473 1.02793 1.24835 1.05732 0.89867 0.95086 1.86534 1.30249 1.80229 1.37917 0.93879 0.77314 0.77364 0.83450 1.66060 1.17994 1.17800 1.28478 1.23517 0.92861 0.91470 0.98322 1.44152 1.01109 1.07591 1.79641 1.21278 0.99245 0.77918 0.96764 0.89860 1.21657 0.94613 0.96193 1.02666 1.21675 1.03886 0.94949 0.94901 1.21090 0.96551 0.79166 0.98033 0.89639 1.44611 1.68819 1.08349 1.13328 1.18652 0.89846 0.88517 0.87847 1.67174 1.20611 1.09634 1.32125 1.22797 0.91372 1.00670 0.87698 1.22118 1.07810 0.95657 1.00785 1.21718 0.92163 0.94853 0.98012 1.21644 1.09919 1.01675 0.94174 1.21930 0.97457 0.95253 1.01780 1.21965 1.02657 0.95524 0.96598 1.83837 0.95807 1.09602 1.73731 0.88792 0.90843 0.90030 0.84294 0.76760 1.21664 1.22277 0.74750 0.89565 0.89747 0.90141 0.89840 0.75947 0.81327 0.83290 0.82984 0.83883 0.91139 0.91866 0.90541 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.21 9.71 71.23 0.69 0.90 16 2 C -0.25 -0.59 6.57 24.57 0.16 -0.43 16 3 C 0.06 0.28 5.19 41.40 0.21 0.50 16 4 C -0.04 -0.14 2.83 71.24 0.20 0.06 16 5 O -0.54 -3.77 12.88 -148.98 -1.92 -5.69 16 6 Si 0.78 2.16 32.62 68.60 2.24 4.40 16 7 N -0.58 -3.77 9.77 -189.86 -1.85 -5.62 16 8 C 0.31 0.87 8.22 179.32 1.47 2.35 16 9 N -0.69 1.66 5.23 -330.41 -1.73 -0.07 16 10 C 0.15 -0.97 2.40 44.99 0.11 -0.86 16 11 H 0.08 -0.48 7.26 -2.39 -0.02 -0.50 16 12 C -0.11 1.05 5.39 30.59 0.16 1.22 16 13 C -0.12 1.02 5.39 30.59 0.16 1.18 16 14 C 0.16 -0.93 2.14 44.99 0.10 -0.83 16 15 H 0.09 -0.51 6.45 -2.39 -0.02 -0.53 16 16 N -0.72 0.83 5.25 -324.54 -1.70 -0.87 16 17 C 0.39 1.51 7.63 133.06 1.02 2.53 16 18 N -0.58 -4.06 10.39 -193.27 -2.01 -6.07 16 19 C 0.13 0.46 11.17 84.62 0.95 1.41 16 20 C -0.24 -0.21 10.10 22.37 0.23 0.02 16 21 C -0.04 -0.01 10.17 22.44 0.23 0.22 16 22 C -0.25 -0.32 8.83 22.50 0.20 -0.12 16 23 C -0.12 0.66 5.42 30.61 0.17 0.82 16 24 C -0.13 0.71 5.51 30.61 0.17 0.88 16 25 S 0.12 0.09 21.68 -56.49 -1.22 -1.14 16 26 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 27 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.08 -0.25 7.18 -2.38 -0.02 -0.27 16 29 H 0.14 -0.13 6.34 -2.39 -0.02 -0.14 16 30 H 0.38 1.56 8.70 -74.06 -0.64 0.92 16 31 H -0.29 -2.28 7.11 99.48 0.71 -1.57 16 32 H -0.30 -2.97 7.11 99.48 0.71 -2.26 16 33 H 0.41 -1.45 8.73 -92.71 -0.81 -2.26 16 34 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 35 H 0.08 -0.87 8.14 -2.39 -0.02 -0.88 16 36 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.40 -0.67 8.73 -92.71 -0.81 -1.48 16 39 H 0.17 -0.20 8.06 -2.91 -0.02 -0.23 16 40 H 0.15 -0.54 8.06 -2.91 -0.02 -0.57 16 41 H 0.15 -0.73 8.06 -2.91 -0.02 -0.75 16 42 H 0.14 -0.35 6.08 -2.91 -0.02 -0.37 16 43 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.06 -0.16 7.66 -2.39 -0.02 -0.18 16 45 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 46 H 0.06 -0.16 8.04 -2.38 -0.02 -0.18 16 Total: 0.00 -17.32 383.17 -3.17 -20.49 By element: Atomic # 1 Polarization: -14.07 SS G_CDS: -1.19 Total: -15.26 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 6.23 Total: 9.83 kcal Atomic # 7 Polarization: -5.34 SS G_CDS: -7.29 Total: -12.63 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -1.92 Total: -5.69 kcal Atomic # 14 Polarization: 2.16 SS G_CDS: 2.24 Total: 4.40 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.22 Total: -1.14 kcal Total: -17.32 -3.17 -20.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10173614_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.462 kcal (2) G-P(sol) polarization free energy of solvation -17.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds