Wall clock time and date at job start Tue Mar 9 2021 12:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47275 * 2 1 4 4 C 1.50704 * 109.46900 * 119.99925 * 2 1 3 5 5 C 1.37983 * 120.32641 * 244.97703 * 4 2 1 6 6 N 1.32009 * 120.89870 * 179.74796 * 5 4 2 7 7 C 1.32333 * 121.64702 * 0.56058 * 6 5 4 8 8 N 1.39147 * 119.72104 * 179.71730 * 7 6 5 9 9 C 1.46504 * 119.99491 * 359.72628 * 8 7 6 10 10 H 1.08996 * 109.47185 * 35.00274 * 9 8 7 11 11 C 1.53002 * 109.46613 * 155.00339 * 9 8 7 12 12 C 1.52995 * 109.47022 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47484 * 300.00563 * 12 11 9 14 14 H 1.09004 * 109.46741 * 299.99742 * 13 12 11 15 15 N 1.46504 * 109.47359 * 179.97438 * 13 12 11 16 16 C 1.39000 * 119.99944 * 154.99484 * 15 13 12 17 17 N 1.32398 * 119.70414 * 180.02562 * 16 15 13 18 18 C 1.31966 * 121.62149 * 179.97438 * 17 16 15 19 19 C 1.38024 * 120.85821 * 359.74207 * 18 17 16 20 20 C 1.38885 * 119.32950 * 0.51631 * 19 18 17 21 21 C 1.38307 * 118.50297 * 359.49415 * 20 19 18 22 22 C 1.52996 * 109.47105 * 59.99366 * 13 12 11 23 23 C 1.52998 * 109.47048 * 275.00252 * 9 8 7 24 24 C 1.39343 * 120.56386 * 359.44400 * 7 6 5 25 25 F 1.35104 * 120.47578 * 180.24964 * 24 7 6 26 26 C 1.38440 * 119.05667 * 0.26911 * 24 7 6 27 27 H 0.96700 * 114.00243 * 300.00189 * 1 2 3 28 28 H 1.09003 * 109.47699 * 239.99354 * 2 1 3 29 29 H 1.48503 * 109.99643 * 178.67754 * 3 2 1 30 30 H 1.48495 * 109.99753 * 299.99554 * 3 2 1 31 31 H 1.07998 * 119.54943 * 0.02562 * 5 4 2 32 32 H 0.97004 * 119.99973 * 179.73561 * 8 7 6 33 33 H 1.09004 * 109.47113 * 60.00111 * 11 9 8 34 34 H 1.08996 * 109.46940 * 300.00156 * 11 9 8 35 35 H 1.09000 * 109.47555 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46920 * 60.00195 * 12 11 9 37 37 H 0.96999 * 119.99907 * 334.99619 * 15 13 12 38 38 H 1.08003 * 119.57220 * 180.02562 * 18 17 16 39 39 H 1.07998 * 120.34210 * 180.28318 * 19 18 17 40 40 H 1.08002 * 120.75213 * 179.77676 * 20 19 18 41 41 H 1.07998 * 120.44980 * 180.23278 * 21 20 19 42 42 H 1.08996 * 109.47299 * 60.00589 * 22 13 12 43 43 H 1.09006 * 109.47060 * 180.02562 * 22 13 12 44 44 H 1.09004 * 109.47326 * 300.00285 * 23 9 8 45 45 H 1.08995 * 109.47438 * 60.00632 * 23 9 8 46 46 H 1.08000 * 120.76223 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6384 -0.0203 2.1936 6 7 3.0794 -0.6302 3.2781 7 6 2.8731 -1.9215 3.4809 8 7 3.3609 -2.5250 4.6359 9 6 4.1046 -1.7324 5.6183 10 1 3.6914 -0.7246 5.6600 11 6 3.9888 -2.3885 6.9957 12 6 4.7660 -1.5612 8.0215 13 6 6.2384 -1.4924 7.6114 14 1 6.6513 -2.5003 7.5696 15 7 6.9824 -0.6997 8.5935 16 6 8.3476 -0.9020 8.7593 17 7 9.0141 -0.1827 9.6488 18 6 10.3102 -0.3437 9.8377 19 6 11.0206 -1.2787 9.1123 20 6 10.3598 -2.0500 8.1650 21 6 9.0013 -1.8589 7.9893 22 6 6.3541 -0.8364 6.2341 23 6 5.5770 -1.6632 5.2084 24 6 2.1666 -2.6809 2.5504 25 9 1.9527 -3.9980 2.7617 26 6 1.6873 -2.0666 1.4061 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7701 0.0322 30 1 1.5616 2.4678 -1.2085 31 1 2.8299 1.0342 2.0604 32 1 3.2087 -3.4704 4.7905 33 1 4.4022 -3.3962 6.9540 34 1 2.9399 -2.4377 7.2876 35 1 4.6832 -2.0282 9.0029 36 1 4.3530 -0.5532 8.0633 37 1 6.5223 -0.0337 9.1279 38 1 10.8209 0.2609 10.5726 39 1 12.0802 -1.4067 9.2768 40 1 10.8938 -2.7858 7.5820 41 1 8.4555 -2.4441 7.2641 42 1 5.9412 0.1715 6.2758 43 1 7.4031 -0.7878 5.9417 44 1 5.9903 -2.6710 5.1667 45 1 5.6595 -1.1958 4.2272 46 1 1.1366 -2.6289 0.6666 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10173614_17656566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:40 Heat of formation + Delta-G solvation = 8.298042 kcal Electronic energy + Delta-G solvation = -29477.697394 eV Core-core repulsion = 25283.061618 eV Total energy + Delta-G solvation = -4194.635776 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.88391 -41.55917 -41.17356 -39.98841 -38.12142 -36.97851 -34.96369 -33.32590 -33.17291 -32.02795 -31.86049 -30.50471 -28.64801 -26.44043 -25.15270 -24.61219 -23.87654 -23.56800 -22.89545 -22.26559 -21.20250 -19.37928 -18.62854 -18.46338 -18.32088 -17.80690 -17.58472 -16.97264 -16.89878 -16.38842 -16.14687 -15.98117 -15.87780 -15.72954 -15.53999 -15.39118 -15.11229 -14.83141 -14.50308 -14.36166 -14.24642 -13.93129 -13.86901 -13.75181 -13.49922 -13.36375 -12.97897 -12.78310 -12.60178 -12.37851 -12.30797 -12.11260 -11.83481 -11.73745 -11.23166 -11.01739 -10.72296 -10.65955 -10.59857 -10.47709 -10.29500 -8.79710 -8.62935 -5.11151 -0.08937 0.10249 0.42772 0.60923 1.20392 1.56602 1.86218 1.91869 2.16331 2.53496 3.02628 3.07897 3.22225 3.39145 3.45185 3.52129 3.56761 3.77167 3.80951 3.86234 3.90481 3.97860 4.00560 4.04124 4.16897 4.24738 4.29372 4.30927 4.37544 4.39297 4.42325 4.45912 4.60248 4.64536 4.69566 4.82171 4.87773 4.88094 4.93157 4.95747 5.05343 5.11318 5.16647 5.23020 5.38969 5.46059 5.69237 5.92199 6.10944 6.14124 6.50387 6.63578 6.92665 7.31611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.055 4.055 3 Si 0.684 3.316 4 C -0.210 4.210 5 C 0.149 3.851 6 N -0.511 5.511 7 C 0.392 3.608 8 N -0.714 5.714 9 C 0.156 3.844 10 H 0.095 0.905 11 C -0.124 4.124 12 C -0.121 4.121 13 C 0.154 3.846 14 H 0.082 0.918 15 N -0.722 5.722 16 C 0.404 3.596 17 N -0.547 5.547 18 C 0.149 3.851 19 C -0.236 4.236 20 C -0.034 4.034 21 C -0.242 4.242 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.021 4.021 25 F -0.134 7.134 26 C -0.038 4.038 27 H 0.380 0.620 28 H 0.115 0.885 29 H -0.254 1.254 30 H -0.251 1.251 31 H 0.163 0.837 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.404 0.596 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.568 0.252 1.201 1.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.166 4.166 3 Si 0.585 3.415 4 C -0.216 4.216 5 C -0.008 4.008 6 N -0.228 5.228 7 C 0.154 3.846 8 N -0.346 5.346 9 C 0.051 3.949 10 H 0.113 0.887 11 C -0.163 4.163 12 C -0.159 4.159 13 C 0.049 3.951 14 H 0.100 0.900 15 N -0.354 5.354 16 C 0.168 3.832 17 N -0.264 5.264 18 C -0.009 4.009 19 C -0.259 4.259 20 C -0.060 4.060 21 C -0.267 4.267 22 C -0.171 4.171 23 C -0.166 4.166 24 C -0.047 4.047 25 F -0.113 7.113 26 C -0.064 4.064 27 H 0.227 0.773 28 H 0.132 0.868 29 H -0.178 1.178 30 H -0.176 1.176 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.172 0.828 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.019 1.561 1.352 2.065 hybrid contribution -0.082 -2.163 -1.056 2.409 sum -0.063 -0.602 0.296 0.674 Atomic orbital electron populations 1.86515 1.17063 1.81671 1.49296 1.24853 0.85235 1.09889 0.96642 0.94897 0.81182 0.77608 0.87818 1.20927 1.05723 0.94663 1.00247 1.22314 0.91696 0.99212 0.87613 1.67294 1.25026 1.07236 1.23195 1.18416 0.90300 0.88911 0.86986 1.44664 1.59035 1.12091 1.18825 1.21018 0.91293 0.96244 0.86328 0.88675 1.21759 1.01373 0.99684 0.93479 1.21701 0.93381 1.01607 0.99230 1.21036 0.91484 0.95024 0.87575 0.89992 1.44537 1.04366 1.43341 1.43116 1.18364 0.85556 0.89607 0.89627 1.67170 1.10228 1.28268 1.20742 1.22425 0.88365 0.94204 0.95867 1.21857 1.01665 1.01187 1.01194 1.21360 0.93558 0.96263 0.94847 1.21435 0.95847 1.03646 1.05751 1.21991 1.01031 1.00098 0.93949 1.21904 0.94559 1.00594 0.99525 1.18011 1.08717 0.79552 0.98463 1.91494 1.93666 1.31193 1.94910 1.21285 0.95551 0.94444 0.95102 0.77298 0.86764 1.17848 1.17592 0.82072 0.75149 0.91009 0.90433 0.90420 0.90646 0.75992 0.82773 0.85117 0.85098 0.85239 0.90941 0.91207 0.91815 0.90859 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.37 12.84 -35.23 -0.45 -0.09 16 2 C -0.05 0.07 2.82 36.01 0.10 0.17 16 3 Si 0.68 -1.42 29.83 -169.99 -5.07 -6.49 16 4 C -0.21 0.13 5.36 -104.47 -0.56 -0.43 16 5 C 0.15 -0.09 9.84 -17.57 -0.17 -0.26 16 6 N -0.51 -0.43 9.20 -12.37 -0.11 -0.55 16 7 C 0.39 0.33 7.47 -154.86 -1.16 -0.83 16 8 N -0.71 0.66 5.23 -53.85 -0.28 0.38 16 9 C 0.16 -0.29 2.47 -67.93 -0.17 -0.46 16 10 H 0.10 -0.07 7.54 -51.93 -0.39 -0.46 16 11 C -0.12 0.40 5.39 -26.73 -0.14 0.26 16 12 C -0.12 0.37 5.39 -26.73 -0.14 0.23 16 13 C 0.15 -0.30 2.14 -67.93 -0.15 -0.44 16 14 H 0.08 -0.15 6.45 -51.93 -0.33 -0.48 16 15 N -0.72 0.00 5.24 -53.93 -0.28 -0.28 16 16 C 0.40 0.92 7.63 -155.02 -1.18 -0.26 16 17 N -0.55 -1.94 10.39 -12.44 -0.13 -2.07 16 18 C 0.15 0.28 11.17 -17.57 -0.20 0.08 16 19 C -0.24 -0.20 10.10 -39.42 -0.40 -0.60 16 20 C -0.03 -0.02 10.17 -39.32 -0.40 -0.42 16 21 C -0.24 -0.29 8.83 -39.22 -0.35 -0.63 16 22 C -0.13 0.20 5.41 -26.76 -0.14 0.06 16 23 C -0.13 0.19 5.51 -26.76 -0.15 0.05 16 24 C -0.02 -0.02 7.35 -39.10 -0.29 -0.31 16 25 F -0.13 -0.24 16.65 2.25 0.04 -0.21 16 26 C -0.04 -0.01 9.82 -39.26 -0.39 -0.40 16 27 H 0.38 -1.70 8.70 45.56 0.40 -1.31 16 28 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 30 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 31 H 0.16 -0.47 4.90 -52.49 -0.26 -0.73 16 32 H 0.41 -0.77 8.07 -40.82 -0.33 -1.10 16 33 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 34 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 35 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 36 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 37 H 0.40 -0.14 8.73 -40.82 -0.36 -0.50 16 38 H 0.16 -0.09 8.06 -52.48 -0.42 -0.51 16 39 H 0.13 -0.15 8.06 -52.49 -0.42 -0.58 16 40 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 41 H 0.13 -0.05 6.07 -52.49 -0.32 -0.37 16 42 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.07 -0.03 7.66 -51.93 -0.40 -0.42 16 44 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 45 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 46 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 LS Contribution 375.78 15.07 5.66 5.66 Total: 0.00 -6.85 375.78 -12.76 -19.61 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -6.25 Total: -11.75 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -5.88 Total: -4.22 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -0.81 Total: -2.52 kcal Atomic # 8 Polarization: 0.37 SS G_CDS: -0.45 Total: -0.09 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.04 Total: -0.21 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.07 Total: -6.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -6.85 -12.76 -19.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10173614_17656566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.909 kcal (2) G-P(sol) polarization free energy of solvation -6.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds