Wall clock time and date at job start Tue Mar 9 2021 12:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47275 * 2 1 4 4 C 1.50704 * 109.46900 * 119.99925 * 2 1 3 5 5 C 1.37983 * 120.32641 * 244.97703 * 4 2 1 6 6 N 1.32009 * 120.89870 * 179.74796 * 5 4 2 7 7 C 1.32333 * 121.64702 * 0.56058 * 6 5 4 8 8 N 1.39147 * 119.72104 * 179.71730 * 7 6 5 9 9 C 1.46504 * 119.99491 * 359.72628 * 8 7 6 10 10 H 1.08996 * 109.47185 * 35.00274 * 9 8 7 11 11 C 1.53002 * 109.46613 * 155.00339 * 9 8 7 12 12 C 1.52995 * 109.47022 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47484 * 300.00563 * 12 11 9 14 14 H 1.09004 * 109.46741 * 299.99742 * 13 12 11 15 15 N 1.46504 * 109.47359 * 179.97438 * 13 12 11 16 16 C 1.39000 * 119.99944 * 154.99484 * 15 13 12 17 17 N 1.32398 * 119.70414 * 180.02562 * 16 15 13 18 18 C 1.31966 * 121.62149 * 179.97438 * 17 16 15 19 19 C 1.38024 * 120.85821 * 359.74207 * 18 17 16 20 20 C 1.38885 * 119.32950 * 0.51631 * 19 18 17 21 21 C 1.38307 * 118.50297 * 359.49415 * 20 19 18 22 22 C 1.52996 * 109.47105 * 59.99366 * 13 12 11 23 23 C 1.52998 * 109.47048 * 275.00252 * 9 8 7 24 24 C 1.39343 * 120.56386 * 359.44400 * 7 6 5 25 25 F 1.35104 * 120.47578 * 180.24964 * 24 7 6 26 26 C 1.38440 * 119.05667 * 0.26911 * 24 7 6 27 27 H 0.96700 * 114.00243 * 300.00189 * 1 2 3 28 28 H 1.09003 * 109.47699 * 239.99354 * 2 1 3 29 29 H 1.48503 * 109.99643 * 178.67754 * 3 2 1 30 30 H 1.48495 * 109.99753 * 299.99554 * 3 2 1 31 31 H 1.07998 * 119.54943 * 0.02562 * 5 4 2 32 32 H 0.97004 * 119.99973 * 179.73561 * 8 7 6 33 33 H 1.09004 * 109.47113 * 60.00111 * 11 9 8 34 34 H 1.08996 * 109.46940 * 300.00156 * 11 9 8 35 35 H 1.09000 * 109.47555 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46920 * 60.00195 * 12 11 9 37 37 H 0.96999 * 119.99907 * 334.99619 * 15 13 12 38 38 H 1.08003 * 119.57220 * 180.02562 * 18 17 16 39 39 H 1.07998 * 120.34210 * 180.28318 * 19 18 17 40 40 H 1.08002 * 120.75213 * 179.77676 * 20 19 18 41 41 H 1.07998 * 120.44980 * 180.23278 * 21 20 19 42 42 H 1.08996 * 109.47299 * 60.00589 * 22 13 12 43 43 H 1.09006 * 109.47060 * 180.02562 * 22 13 12 44 44 H 1.09004 * 109.47326 * 300.00285 * 23 9 8 45 45 H 1.08995 * 109.47438 * 60.00632 * 23 9 8 46 46 H 1.08000 * 120.76223 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6384 -0.0203 2.1936 6 7 3.0794 -0.6302 3.2781 7 6 2.8731 -1.9215 3.4809 8 7 3.3609 -2.5250 4.6359 9 6 4.1046 -1.7324 5.6183 10 1 3.6914 -0.7246 5.6600 11 6 3.9888 -2.3885 6.9957 12 6 4.7660 -1.5612 8.0215 13 6 6.2384 -1.4924 7.6114 14 1 6.6513 -2.5003 7.5696 15 7 6.9824 -0.6997 8.5935 16 6 8.3476 -0.9020 8.7593 17 7 9.0141 -0.1827 9.6488 18 6 10.3102 -0.3437 9.8377 19 6 11.0206 -1.2787 9.1123 20 6 10.3598 -2.0500 8.1650 21 6 9.0013 -1.8589 7.9893 22 6 6.3541 -0.8364 6.2341 23 6 5.5770 -1.6632 5.2084 24 6 2.1666 -2.6809 2.5504 25 9 1.9527 -3.9980 2.7617 26 6 1.6873 -2.0666 1.4061 27 1 -0.3934 0.4417 0.7650 28 1 1.7924 -0.5139 -0.8899 29 1 3.5346 1.7701 0.0322 30 1 1.5616 2.4678 -1.2085 31 1 2.8299 1.0342 2.0604 32 1 3.2087 -3.4704 4.7905 33 1 4.4022 -3.3962 6.9540 34 1 2.9399 -2.4377 7.2876 35 1 4.6832 -2.0282 9.0029 36 1 4.3530 -0.5532 8.0633 37 1 6.5223 -0.0337 9.1279 38 1 10.8209 0.2609 10.5726 39 1 12.0802 -1.4067 9.2768 40 1 10.8938 -2.7858 7.5820 41 1 8.4555 -2.4441 7.2641 42 1 5.9412 0.1715 6.2758 43 1 7.4031 -0.7878 5.9417 44 1 5.9903 -2.6710 5.1667 45 1 5.6595 -1.1958 4.2272 46 1 1.1366 -2.6289 0.6666 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10173614_17656566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:39 Heat of formation + Delta-G solvation = 12.163289 kcal Electronic energy + Delta-G solvation = -29477.529784 eV Core-core repulsion = 25283.061618 eV Total energy + Delta-G solvation = -4194.468167 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.95417 -41.52878 -41.18783 -39.91465 -38.05262 -36.92383 -34.91862 -33.34624 -33.18910 -31.90519 -31.81391 -30.48786 -28.59575 -26.38352 -25.13571 -24.61093 -23.81057 -23.53014 -22.86944 -22.20241 -21.08550 -19.34529 -18.60491 -18.43421 -18.31110 -17.80118 -17.55654 -17.00944 -16.86258 -16.35305 -16.09285 -15.92651 -15.84898 -15.67589 -15.45392 -15.39377 -15.08973 -14.83653 -14.47714 -14.33969 -14.21886 -13.90606 -13.85431 -13.66164 -13.44688 -13.24118 -12.91550 -12.68543 -12.52264 -12.31389 -12.16712 -12.14567 -11.72062 -11.63390 -11.17081 -10.97134 -10.71017 -10.67966 -10.64003 -10.41094 -10.37770 -8.76256 -8.64607 -4.98320 -0.08438 0.10570 0.37081 0.55850 1.31315 1.65982 1.93090 1.99694 2.20258 2.54413 3.01258 3.03020 3.27891 3.49878 3.59761 3.66095 3.67549 3.78041 3.85722 3.94328 3.99850 4.03927 4.12365 4.15062 4.22129 4.35435 4.37694 4.42097 4.44166 4.45575 4.46863 4.50527 4.69331 4.76227 4.77648 4.87184 4.94442 4.99020 5.07046 5.11839 5.13979 5.15483 5.22929 5.32719 5.42988 5.46394 5.70641 5.98905 6.12206 6.20452 6.62163 6.79188 6.96592 7.26145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.058 4.058 3 Si 0.773 3.227 4 C -0.208 4.208 5 C 0.148 3.852 6 N -0.524 5.524 7 C 0.385 3.615 8 N -0.710 5.710 9 C 0.160 3.840 10 H 0.085 0.915 11 C -0.117 4.117 12 C -0.114 4.114 13 C 0.158 3.842 14 H 0.084 0.916 15 N -0.719 5.719 16 C 0.387 3.613 17 N -0.577 5.577 18 C 0.131 3.869 19 C -0.241 4.241 20 C -0.041 4.041 21 C -0.250 4.250 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.038 4.038 25 F -0.141 7.141 26 C -0.042 4.042 27 H 0.396 0.604 28 H 0.110 0.890 29 H -0.282 1.282 30 H -0.297 1.297 31 H 0.183 0.817 32 H 0.416 0.584 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.170 0.830 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.142 0.858 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 0.008 1.500 1.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.169 4.169 3 Si 0.678 3.322 4 C -0.213 4.213 5 C -0.009 4.009 6 N -0.241 5.241 7 C 0.146 3.854 8 N -0.342 5.342 9 C 0.056 3.944 10 H 0.103 0.897 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.053 3.947 14 H 0.102 0.898 15 N -0.351 5.351 16 C 0.151 3.849 17 N -0.295 5.295 18 C -0.025 4.025 19 C -0.264 4.264 20 C -0.067 4.067 21 C -0.275 4.275 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.065 4.065 25 F -0.120 7.120 26 C -0.068 4.068 27 H 0.246 0.754 28 H 0.128 0.872 29 H -0.208 1.208 30 H -0.225 1.225 31 H 0.200 0.800 32 H 0.254 0.746 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.240 0.760 38 H 0.187 0.813 39 H 0.168 0.832 40 H 0.170 0.830 41 H 0.160 0.840 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.010 1.293 1.683 2.122 hybrid contribution -0.070 -2.060 -1.204 2.387 sum -0.080 -0.767 0.479 0.908 Atomic orbital electron populations 1.86480 1.17213 1.82142 1.50545 1.24968 0.85231 1.10521 0.96139 0.93859 0.77997 0.74901 0.85404 1.20970 1.05582 0.94317 1.00426 1.22674 0.90954 1.00128 0.87102 1.67353 1.25548 1.07312 1.23862 1.18557 0.90360 0.89040 0.87407 1.44721 1.58671 1.12369 1.18456 1.20992 0.90714 0.95881 0.86860 0.89658 1.21700 1.01669 0.99849 0.92288 1.21649 0.92397 1.01869 0.99350 1.21073 0.92030 0.94701 0.86862 0.89771 1.44630 1.03823 1.43408 1.43233 1.18656 0.86346 0.89999 0.89861 1.67172 1.11183 1.29362 1.21820 1.22808 0.88234 0.94911 0.96579 1.22119 1.02631 1.00748 1.00886 1.21718 0.93601 0.96524 0.94873 1.21641 0.96343 1.03612 1.05894 1.21881 1.00210 0.99853 0.94225 1.21802 0.94879 1.00522 0.98538 1.18144 1.09770 0.79424 0.99146 1.91467 1.93834 1.31674 1.95016 1.21431 0.95448 0.94967 0.94974 0.75405 0.87246 1.20848 1.22528 0.80038 0.74646 0.90164 0.89986 0.90075 0.90430 0.75994 0.81264 0.83224 0.82953 0.84011 0.91518 0.92325 0.91399 0.92579 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.96 12.84 -148.98 -1.91 -0.95 16 2 C -0.06 0.15 2.82 71.24 0.20 0.36 16 3 Si 0.77 -3.33 29.83 68.60 2.05 -1.28 16 4 C -0.21 0.26 5.36 -19.76 -0.11 0.16 16 5 C 0.15 -0.21 9.84 84.61 0.83 0.62 16 6 N -0.52 -0.96 9.20 -193.04 -1.78 -2.74 16 7 C 0.39 0.78 7.47 133.08 0.99 1.78 16 8 N -0.71 1.21 5.23 -324.28 -1.69 -0.49 16 9 C 0.16 -0.60 2.47 44.99 0.11 -0.49 16 10 H 0.09 -0.11 7.54 -2.39 -0.02 -0.13 16 11 C -0.12 0.83 5.39 30.59 0.16 1.00 16 12 C -0.11 0.75 5.39 30.59 0.16 0.92 16 13 C 0.16 -0.62 2.14 44.99 0.10 -0.52 16 14 H 0.08 -0.34 6.45 -2.38 -0.02 -0.35 16 15 N -0.72 -0.34 5.24 -324.53 -1.70 -2.04 16 16 C 0.39 1.99 7.63 133.07 1.02 3.01 16 17 N -0.58 -4.59 10.39 -193.27 -2.01 -6.60 16 18 C 0.13 0.55 11.17 84.62 0.95 1.50 16 19 C -0.24 -0.36 10.10 22.37 0.23 -0.13 16 20 C -0.04 -0.04 10.17 22.44 0.23 0.18 16 21 C -0.25 -0.62 8.83 22.50 0.20 -0.42 16 22 C -0.12 0.32 5.41 30.58 0.17 0.49 16 23 C -0.12 0.33 5.51 30.58 0.17 0.50 16 24 C -0.04 -0.11 7.35 22.58 0.17 0.05 16 25 F -0.14 -0.61 16.65 44.97 0.75 0.14 16 26 C -0.04 -0.05 9.82 22.48 0.22 0.17 16 27 H 0.40 -3.85 8.70 -74.06 -0.64 -4.49 16 28 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 29 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 30 H -0.30 -1.05 7.11 99.48 0.71 -0.35 16 31 H 0.18 -1.21 4.90 -2.91 -0.01 -1.22 16 32 H 0.42 -1.55 8.07 -92.71 -0.75 -2.30 16 33 H 0.08 -0.67 8.14 -2.38 -0.02 -0.69 16 34 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.08 -0.51 8.14 -2.38 -0.02 -0.53 16 37 H 0.40 -0.02 8.73 -92.71 -0.81 -0.83 16 38 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16 39 H 0.15 -0.48 8.06 -2.91 -0.02 -0.50 16 40 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 41 H 0.14 -0.15 6.07 -2.91 -0.02 -0.16 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.06 0.00 7.66 -2.38 -0.02 -0.02 16 44 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 45 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.15 -0.04 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -16.68 375.78 -1.63 -18.30 By element: Atomic # 1 Polarization: -12.40 SS G_CDS: -1.12 Total: -13.52 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.79 Total: 9.17 kcal Atomic # 7 Polarization: -4.68 SS G_CDS: -7.18 Total: -11.86 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: -1.91 Total: -0.95 kcal Atomic # 9 Polarization: -0.61 SS G_CDS: 0.75 Total: 0.14 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.05 Total: -1.28 kcal Total: -16.68 -1.63 -18.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10173614_17656566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.468 kcal (2) G-P(sol) polarization free energy of solvation -16.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds