Wall clock time and date at job start Tue Mar 9 2021 12:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.52993 * 109.47345 * 65.00157 * 3 2 1 6 6 C 1.53000 * 109.47345 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46846 * 300.00008 * 6 5 3 8 8 H 1.08993 * 109.46769 * 299.99438 * 7 6 5 9 9 N 1.46505 * 109.47023 * 179.97438 * 7 6 5 10 10 C 1.38411 * 119.99677 * 84.99802 * 9 7 6 11 11 N 1.32492 * 119.21938 * 359.73110 * 10 9 7 12 12 C 1.32271 * 120.74092 * 179.71962 * 11 10 9 13 13 C 1.38609 * 119.19698 * 0.53945 * 12 11 10 14 14 C 1.50698 * 120.72348 * 179.70722 * 13 12 11 15 15 O 1.42900 * 109.47577 * 245.02623 * 14 13 12 16 16 Si 1.86306 * 109.46910 * 5.02811 * 14 13 12 17 17 C 1.38609 * 118.55636 * 359.73534 * 13 12 11 18 18 N 1.32274 * 119.19723 * 359.97438 * 17 13 12 19 19 C 1.52993 * 109.47155 * 59.99875 * 7 6 5 20 20 C 1.53000 * 109.47345 * 299.99819 * 19 7 6 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09002 * 109.47179 * 299.99584 * 5 3 2 27 27 H 1.08993 * 109.47639 * 59.99724 * 5 3 2 28 28 H 1.09001 * 109.47624 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.47069 * 59.99442 * 6 5 3 30 30 H 0.96996 * 120.00351 * 264.99980 * 9 7 6 31 31 H 1.07995 * 120.40317 * 180.25430 * 12 11 10 32 32 H 1.08997 * 109.46918 * 125.02565 * 14 13 12 33 33 H 0.96705 * 113.99617 * 59.99829 * 15 14 13 34 34 H 1.48499 * 109.99879 * 58.67966 * 16 14 13 35 35 H 1.48500 * 109.99744 * 179.97438 * 16 14 13 36 36 H 1.07999 * 120.39884 * 179.97438 * 17 13 12 37 37 H 1.09002 * 109.47179 * 180.02562 * 19 7 6 38 38 H 1.09002 * 109.47493 * 60.00117 * 19 7 6 39 39 H 1.09002 * 109.47069 * 300.00558 * 20 19 7 40 40 H 1.09001 * 109.47624 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 2.1447 3.5692 1.3070 7 6 3.6696 3.5716 1.1809 8 1 4.1045 3.0329 2.0227 9 7 4.1574 4.9530 1.1801 10 6 4.3880 5.6062 2.3784 11 7 4.1573 4.9693 3.5170 12 6 4.3726 5.5628 4.6793 13 6 4.8342 6.8697 4.6960 14 6 5.0848 7.5811 6.0006 15 8 4.1765 8.6770 6.1278 16 14 4.8283 6.3947 7.4141 17 6 5.0596 7.5082 3.4866 18 7 4.8296 6.8553 2.3594 19 6 4.0743 2.8875 -0.1263 20 6 3.5648 1.4448 -0.1261 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.5489 2.1253 1.3969 27 1 2.0698 1.5876 2.1491 28 1 1.8560 4.0568 2.2382 29 1 1.7097 4.1080 0.4652 30 1 4.3187 5.4099 0.3398 31 1 4.1866 5.0371 5.6042 32 1 6.1088 7.9538 6.0203 33 1 3.2447 8.4187 6.1181 34 1 5.7451 5.2347 7.2761 35 1 5.0731 7.0841 8.7064 36 1 5.4188 8.5265 3.4648 37 1 5.1606 2.8888 -0.2160 38 1 3.6393 3.4263 -0.9682 39 1 3.9998 0.9061 0.7158 40 1 3.8535 0.9573 -1.0573 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10466080_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:25 Heat of formation + Delta-G solvation = 4.777459 kcal Electronic energy + Delta-G solvation = -20139.638635 eV Core-core repulsion = 17148.172262 eV Total energy + Delta-G solvation = -2991.466373 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.06691 -40.18214 -38.10953 -36.74439 -34.67878 -34.04859 -32.08678 -31.78152 -29.17051 -26.50939 -25.84810 -24.43688 -23.70866 -22.90159 -21.67569 -20.88703 -19.27943 -18.66250 -18.05143 -16.77525 -16.58637 -16.04980 -16.01243 -15.62885 -15.59305 -15.40985 -15.02165 -14.59262 -14.47618 -14.27983 -14.05396 -13.82323 -13.26453 -13.15680 -12.86231 -12.55003 -12.42407 -12.20294 -12.14016 -11.82899 -11.75249 -11.71712 -11.52293 -11.42042 -11.13979 -10.88051 -10.56099 -9.97011 -9.05294 -5.10461 0.10950 0.20402 1.23615 1.57286 1.84778 1.93383 2.87290 3.17638 3.42644 3.59674 3.64793 3.65795 3.73337 3.75416 3.89313 4.02707 4.14151 4.22064 4.31156 4.37884 4.43698 4.47894 4.50971 4.52056 4.65567 4.71120 4.74057 4.84882 4.96189 5.00781 5.06141 5.10627 5.13278 5.21194 5.23214 5.27537 5.34707 5.45767 5.53392 5.83904 6.06582 6.46295 6.52709 7.34596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.111 4.111 6 C -0.128 4.128 7 C 0.161 3.839 8 H 0.092 0.908 9 N -0.692 5.692 10 C 0.569 3.431 11 N -0.560 5.560 12 C 0.200 3.800 13 C -0.297 4.297 14 C -0.045 4.045 15 O -0.541 6.541 16 Si 0.679 3.321 17 C 0.223 3.777 18 N -0.571 5.571 19 C -0.128 4.128 20 C -0.110 4.110 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.413 0.587 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.379 0.621 34 H -0.255 1.255 35 H -0.251 1.251 36 H 0.169 0.831 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 -2.240 -0.186 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.167 4.167 7 C 0.056 3.944 8 H 0.110 0.890 9 N -0.327 5.327 10 C 0.212 3.788 11 N -0.283 5.283 12 C 0.032 3.968 13 C -0.305 4.305 14 C -0.158 4.158 15 O -0.346 6.346 16 Si 0.581 3.419 17 C 0.055 3.945 18 N -0.293 5.293 19 C -0.166 4.166 20 C -0.148 4.148 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.182 0.818 32 H 0.132 0.868 33 H 0.226 0.774 34 H -0.180 1.180 35 H -0.175 1.175 36 H 0.186 0.814 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.573 -2.999 -0.377 3.407 hybrid contribution 0.644 0.946 0.002 1.144 sum -0.930 -2.053 -0.375 2.285 Atomic orbital electron populations 1.21828 0.95808 1.01687 1.01941 1.21565 0.96025 0.96114 1.02072 1.21248 0.95194 0.96151 0.98290 0.91109 1.21588 1.01024 0.94807 0.97515 1.21940 0.94972 0.97344 1.02409 1.21033 0.94141 0.80124 0.99104 0.88981 1.44351 1.70207 1.14264 1.03898 1.19412 0.87088 0.85480 0.86785 1.67924 1.24211 1.38485 0.97635 1.22758 0.88149 0.90511 0.95386 1.21692 1.12184 0.98092 0.98546 1.24690 0.96172 0.95363 0.99554 1.86511 1.19530 1.32466 1.96082 0.95020 0.90773 0.78463 0.77633 1.22826 0.87322 0.98654 0.85711 1.67997 1.20640 1.08541 1.32074 1.21823 1.01367 0.96635 0.96785 1.21529 0.95392 0.95346 1.02508 0.92797 0.92434 0.92803 0.91998 0.91906 0.91378 0.91587 0.91381 0.92021 0.74967 0.81769 0.86771 0.77388 1.18010 1.17535 0.81379 0.91256 0.91296 0.91521 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.17 9.67 37.16 0.36 0.53 16 2 C -0.12 0.15 5.40 -26.73 -0.14 0.01 16 3 C -0.09 0.13 2.19 -90.62 -0.20 -0.07 16 4 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 5 C -0.11 0.12 4.96 -26.73 -0.13 -0.01 16 6 C -0.13 0.04 5.51 -26.73 -0.15 -0.11 16 7 C 0.16 -0.04 2.45 -67.93 -0.17 -0.20 16 8 H 0.09 0.10 7.51 -51.93 -0.39 -0.29 16 9 N -0.69 -0.59 5.22 -55.79 -0.29 -0.89 16 10 C 0.57 1.58 8.40 -322.80 -2.71 -1.13 16 11 N -0.56 -1.31 9.21 -13.93 -0.13 -1.43 16 12 C 0.20 0.08 9.92 -17.23 -0.17 -0.09 16 13 C -0.30 -0.04 5.36 -104.35 -0.56 -0.59 16 14 C -0.05 0.05 2.83 36.00 0.10 0.15 16 15 O -0.54 0.28 12.85 -35.23 -0.45 -0.17 16 16 Si 0.68 -1.19 29.89 -169.99 -5.08 -6.27 16 17 C 0.22 0.31 10.99 -17.22 -0.19 0.12 16 18 N -0.57 -1.78 10.46 -13.93 -0.15 -1.92 16 19 C -0.13 0.19 5.39 -26.73 -0.14 0.04 16 20 C -0.11 0.18 5.21 -26.73 -0.14 0.04 16 21 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 22 H 0.06 -0.06 6.57 -51.93 -0.34 -0.40 16 23 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 25 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.07 -0.07 6.57 -51.93 -0.34 -0.41 16 27 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 28 H 0.07 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.41 -0.05 8.72 -40.82 -0.36 -0.40 16 31 H 0.17 -0.38 5.07 -52.49 -0.27 -0.64 16 32 H 0.11 -0.09 7.96 -51.93 -0.41 -0.51 16 33 H 0.38 -1.57 8.70 45.56 0.40 -1.17 16 34 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 35 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 36 H 0.17 -0.06 8.06 -52.49 -0.42 -0.48 16 37 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 38 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 39 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 40 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 LS Contribution 316.95 15.07 4.78 4.78 Total: 0.00 -5.13 316.95 -11.97 -17.09 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: -6.40 Total: -9.86 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -4.24 Total: -1.33 kcal Atomic # 7 Polarization: -3.68 SS G_CDS: -0.57 Total: -4.24 kcal Atomic # 8 Polarization: 0.28 SS G_CDS: -0.45 Total: -0.17 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.08 Total: -6.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -5.13 -11.97 -17.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10466080_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.872 kcal (2) G-P(sol) polarization free energy of solvation -5.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds