Wall clock time and date at job start Tue Mar 9 2021 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47280 * 2 1 4 4 H 1.09005 * 109.47587 * 304.99952 * 3 2 1 5 5 C 1.53000 * 109.47016 * 64.99900 * 3 2 1 6 6 C 1.53005 * 109.46886 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47305 * 299.99584 * 6 5 3 8 8 H 1.08997 * 109.47419 * 300.00858 * 7 6 5 9 9 N 1.46495 * 109.47146 * 180.02562 * 7 6 5 10 10 C 1.39140 * 120.00119 * 85.00650 * 9 7 6 11 11 N 1.32341 * 119.71829 * 0.26510 * 10 9 7 12 12 C 1.32007 * 121.64629 * 180.27154 * 11 10 9 13 13 C 1.37982 * 120.90207 * 359.72225 * 12 11 10 14 14 C 1.50697 * 120.32645 * 179.97438 * 13 12 11 15 15 O 1.42906 * 109.47139 * 245.02265 * 14 13 12 16 16 Si 1.86299 * 109.47189 * 5.02018 * 14 13 12 17 17 C 1.38904 * 119.34805 * 0.02562 * 13 12 11 18 18 C 1.38439 * 118.48364 * 0.02562 * 17 13 12 19 19 F 1.35104 * 120.47218 * 179.97438 * 18 17 13 20 20 C 1.53007 * 109.46614 * 60.00179 * 7 6 5 21 21 C 1.52992 * 109.47269 * 299.99983 * 20 7 6 22 22 H 1.08990 * 109.47033 * 300.00070 * 1 2 3 23 23 H 1.09003 * 109.47107 * 60.00111 * 1 2 3 24 24 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47169 * 239.99972 * 2 1 3 26 26 H 1.09002 * 109.46964 * 120.00422 * 2 1 3 27 27 H 1.08999 * 109.47062 * 299.99810 * 5 3 2 28 28 H 1.08998 * 109.47108 * 60.00265 * 5 3 2 29 29 H 1.09005 * 109.46758 * 180.02562 * 6 5 3 30 30 H 1.08998 * 109.47080 * 60.00187 * 6 5 3 31 31 H 0.97006 * 120.00385 * 265.00498 * 9 7 6 32 32 H 1.08007 * 119.54768 * 179.74889 * 12 11 10 33 33 H 1.08993 * 109.47730 * 125.02427 * 14 13 12 34 34 H 0.96700 * 113.99930 * 179.97438 * 15 14 13 35 35 H 1.48507 * 110.00303 * 178.68237 * 16 14 13 36 36 H 1.48499 * 110.00232 * 300.00415 * 16 14 13 37 37 H 1.07997 * 120.75505 * 179.97438 * 17 13 12 38 38 H 1.09005 * 109.46843 * 60.00472 * 20 7 6 39 39 H 1.09004 * 109.46705 * 179.97438 * 20 7 6 40 40 H 1.08999 * 109.47271 * 179.97438 * 21 20 7 41 41 H 1.08997 * 109.47468 * 299.99752 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1264 1.3073 6 6 2.1447 3.5692 1.3070 7 6 3.6696 3.5715 1.1811 8 1 4.1045 3.0327 2.0229 9 7 4.1574 4.9529 1.1815 10 6 4.3894 5.6085 2.3866 11 7 4.1724 4.9772 3.5293 12 6 4.3747 5.5642 4.6942 13 6 4.8286 6.8655 4.7626 14 6 5.0546 7.5232 6.0995 15 8 4.1397 8.6098 6.2565 16 14 4.7796 6.2787 7.4583 17 6 5.0741 7.5636 3.5871 18 6 4.8521 6.9229 2.3801 19 9 5.0772 7.5642 1.2125 20 6 4.0743 2.8874 -0.1263 21 6 3.5648 1.4448 -0.1260 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.5489 2.1252 1.3969 28 1 2.0698 1.5874 2.1491 29 1 1.8567 4.0563 2.2387 30 1 1.7098 4.1079 0.4653 31 1 4.3188 5.4105 0.3415 32 1 4.1828 5.0184 5.6062 33 1 6.0765 7.8984 6.1518 34 1 4.2281 9.0801 7.0968 35 1 5.0303 6.9066 8.7806 36 1 3.3896 5.7596 7.3979 37 1 5.4293 8.5831 3.6142 38 1 3.6394 3.4263 -0.9681 39 1 5.1606 2.8895 -0.2162 40 1 3.8528 0.9576 -1.0575 41 1 3.9998 0.9060 0.7157 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10466080_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:34 Heat of formation + Delta-G solvation = -48.486379 kcal Electronic energy + Delta-G solvation = -22345.450871 eV Core-core repulsion = 18947.646740 eV Total energy + Delta-G solvation = -3397.804131 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.96798 -41.47272 -40.06220 -38.07137 -36.72919 -34.10513 -33.20774 -31.76633 -31.46214 -29.03925 -26.40939 -25.30370 -24.09082 -23.51019 -22.66656 -21.59810 -20.82622 -19.21392 -18.64467 -18.33746 -18.06267 -16.94916 -16.79989 -16.26734 -15.87926 -15.71660 -15.50618 -15.17485 -15.01960 -14.77171 -14.38922 -14.31283 -14.21040 -14.06884 -13.92292 -13.58713 -13.16310 -12.87209 -12.61085 -12.46968 -12.34847 -12.08496 -12.06114 -11.65258 -11.49897 -11.39280 -11.09928 -10.90972 -10.71462 -10.65093 -10.42440 -8.76787 -4.90278 -0.09815 0.10283 1.30199 1.62049 1.96554 1.97492 2.49966 3.01743 3.23410 3.39575 3.65012 3.69777 3.72759 3.84563 3.87654 4.07833 4.10705 4.18851 4.35354 4.38887 4.42029 4.45032 4.50496 4.55882 4.58622 4.70610 4.72075 4.78477 4.88605 4.98928 5.02005 5.08466 5.14186 5.17574 5.21077 5.26949 5.30921 5.31894 5.42715 5.52402 5.60560 5.98870 6.19395 6.61484 6.95544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.086 4.086 4 H 0.068 0.932 5 C -0.107 4.107 6 C -0.123 4.123 7 C 0.161 3.839 8 H 0.082 0.918 9 N -0.711 5.711 10 C 0.382 3.618 11 N -0.524 5.524 12 C 0.145 3.855 13 C -0.168 4.168 14 C -0.071 4.071 15 O -0.560 6.560 16 Si 0.760 3.240 17 C -0.041 4.041 18 C -0.039 4.039 19 F -0.140 7.140 20 C -0.122 4.122 21 C -0.107 4.107 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.414 0.586 32 H 0.179 0.821 33 H 0.101 0.899 34 H 0.397 0.603 35 H -0.281 1.281 36 H -0.294 1.294 37 H 0.157 0.843 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -2.212 0.956 3.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.162 4.162 7 C 0.057 3.943 8 H 0.100 0.900 9 N -0.343 5.343 10 C 0.144 3.856 11 N -0.242 5.242 12 C -0.012 4.012 13 C -0.173 4.173 14 C -0.180 4.180 15 O -0.370 6.370 16 Si 0.665 3.335 17 C -0.067 4.067 18 C -0.065 4.065 19 F -0.119 7.119 20 C -0.160 4.160 21 C -0.145 4.145 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.252 0.748 32 H 0.195 0.805 33 H 0.118 0.882 34 H 0.247 0.753 35 H -0.208 1.208 36 H -0.221 1.221 37 H 0.174 0.826 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.672 -3.643 0.990 4.128 hybrid contribution -0.144 2.582 -0.224 2.595 sum 1.527 -1.061 0.766 2.011 Atomic orbital electron populations 1.21836 0.96084 1.01654 1.01785 1.21549 0.95773 0.96068 1.02202 1.21194 0.95555 0.96000 0.97655 0.91397 1.21549 1.00781 0.94326 0.97880 1.21870 0.95520 0.97591 1.01192 1.20975 0.93559 0.80394 0.99365 0.89976 1.44777 1.70810 1.14884 1.03871 1.18594 0.91473 0.87143 0.88427 1.67367 1.22696 1.37162 0.96927 1.22662 0.91561 0.91862 0.95151 1.20016 1.06965 0.95553 0.94798 1.24772 0.96349 0.96172 1.00676 1.86552 1.60381 1.46350 1.43760 0.94222 0.82726 0.82451 0.74136 1.21447 0.94862 1.00793 0.89609 1.18120 1.13383 0.92105 0.82887 1.91463 1.93289 1.81383 1.45760 1.21772 1.01485 0.96604 0.96109 1.21508 0.94923 0.95257 1.02803 0.92646 0.92929 0.92749 0.91685 0.91900 0.91675 0.91788 0.93295 0.92340 0.74809 0.80494 0.88154 0.75273 1.20786 1.22135 0.82564 0.91056 0.90976 0.90701 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.19 9.67 71.98 0.70 0.89 16 2 C -0.12 0.23 5.40 30.59 0.17 0.40 16 3 C -0.09 0.17 2.19 -10.79 -0.02 0.15 16 4 H 0.07 -0.08 8.14 -2.38 -0.02 -0.10 16 5 C -0.11 0.03 4.96 30.60 0.15 0.18 16 6 C -0.12 -0.21 5.51 30.60 0.17 -0.05 16 7 C 0.16 0.14 2.47 45.00 0.11 0.25 16 8 H 0.08 0.27 7.53 -2.39 -0.02 0.25 16 9 N -0.71 -1.84 5.22 -324.28 -1.69 -3.53 16 10 C 0.38 2.28 7.47 133.09 0.99 3.27 16 11 N -0.52 -3.17 9.20 -193.03 -1.78 -4.95 16 12 C 0.14 0.43 9.84 84.61 0.83 1.26 16 13 C -0.17 -0.39 5.39 -19.77 -0.11 -0.50 16 14 C -0.07 0.14 2.81 71.24 0.20 0.34 16 15 O -0.56 -0.56 12.82 -148.98 -1.91 -2.47 16 16 Si 0.76 -2.68 29.87 68.60 2.05 -0.63 16 17 C -0.04 -0.16 9.82 22.48 0.22 0.06 16 18 C -0.04 -0.23 7.35 22.58 0.17 -0.07 16 19 F -0.14 -0.96 16.65 44.97 0.75 -0.21 16 20 C -0.12 0.29 5.39 30.59 0.16 0.46 16 21 C -0.11 0.32 5.20 30.59 0.16 0.48 16 22 H 0.05 -0.05 6.56 -2.39 -0.02 -0.06 16 23 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 26 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.06 0.01 6.56 -2.39 -0.02 -0.01 16 28 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.41 0.18 8.08 -92.70 -0.75 -0.57 16 32 H 0.18 -0.26 4.87 -2.91 -0.01 -0.28 16 33 H 0.10 -0.64 7.96 -2.39 -0.02 -0.66 16 34 H 0.40 -2.83 8.74 -74.06 -0.65 -3.48 16 35 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 36 H -0.29 -1.05 7.05 99.48 0.70 -0.35 16 37 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 39 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 Total: 0.00 -11.19 327.47 0.99 -10.20 By element: Atomic # 1 Polarization: -5.21 SS G_CDS: -0.33 Total: -5.53 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 3.90 Total: 7.13 kcal Atomic # 7 Polarization: -5.01 SS G_CDS: -3.47 Total: -8.48 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -1.91 Total: -2.47 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.75 Total: -0.21 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.05 Total: -0.63 kcal Total: -11.19 0.99 -10.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10466080_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.286 kcal (2) G-P(sol) polarization free energy of solvation -11.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds