Wall clock time and date at job start Tue Mar 9 2021 13:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.42906 * 109.47321 * 240.00014 * 2 1 3 6 6 C 1.42898 * 113.99821 * 59.99868 * 5 2 1 7 7 H 1.09003 * 112.85082 * 18.80404 * 6 5 2 8 8 C 1.53775 * 113.61498 * 150.00151 * 6 5 2 9 9 C 1.53784 * 87.08185 * 139.98321 * 8 6 5 10 10 H 1.09004 * 113.61052 * 220.02337 * 9 8 6 11 11 N 1.46492 * 113.61290 * 89.20479 * 9 8 6 12 12 C 1.39148 * 120.00119 * 155.00188 * 11 9 8 13 13 N 1.32337 * 119.71443 * 359.97438 * 12 11 9 14 14 C 1.32011 * 121.64388 * 179.97438 * 13 12 11 15 15 C 1.37984 * 120.90205 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.32695 * 179.97438 * 15 14 13 17 17 O 1.42888 * 109.47102 * 244.99743 * 16 15 14 18 18 Si 1.86300 * 109.47113 * 5.00167 * 16 15 14 19 19 C 1.38908 * 119.34582 * 359.97438 * 15 14 13 20 20 C 1.38442 * 118.48355 * 359.75163 * 19 15 14 21 21 F 1.35102 * 120.47025 * 180.26950 * 20 19 15 22 22 C 1.53781 * 113.61403 * 247.50173 * 6 5 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09000 * 113.61888 * 254.53371 * 8 6 5 33 33 H 1.08999 * 113.61319 * 25.35256 * 8 6 5 34 34 H 0.96999 * 120.00205 * 334.99470 * 11 9 8 35 35 H 1.07999 * 119.54613 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.46705 * 124.99466 * 16 15 14 37 37 H 0.96700 * 114.00310 * 179.97438 * 17 16 15 38 38 H 1.48503 * 109.99475 * 299.99737 * 18 16 15 39 39 H 1.48499 * 110.00311 * 61.31553 * 18 16 15 40 40 H 1.07995 * 120.75672 * 180.02562 * 19 15 14 41 41 H 1.08997 * 113.61644 * 334.56221 * 22 6 5 42 42 H 1.09003 * 113.61323 * 105.47351 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0064 -0.6737 -1.1668 6 6 1.5847 -0.0773 -2.3951 7 1 1.2523 0.9535 -2.2729 8 6 2.5837 -0.2699 -3.5482 9 6 1.3667 -0.5003 -4.4596 10 1 1.5124 -1.2968 -5.1894 11 7 0.8396 0.7292 -5.0568 12 6 0.1282 0.6730 -6.2514 13 7 -0.0685 -0.4941 -6.8434 14 6 -0.7382 -0.5915 -7.9769 15 6 -1.2605 0.5289 -8.5899 16 6 -2.0223 0.4027 -9.8841 17 8 -1.3055 1.0685 -10.9256 18 14 -2.2166 -1.3987 -10.3173 19 6 -1.0772 1.7742 -8.0025 20 6 -0.3758 1.8453 -6.8110 21 9 -0.1787 3.0351 -6.2020 22 6 0.6076 -0.9503 -3.2001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 3.1477 0.6303 -3.7922 33 1 3.2180 -1.1489 -3.4341 34 1 0.9865 1.5824 -4.6195 35 1 -0.8791 -1.5614 -8.4305 36 1 -3.0065 0.8576 -9.7721 37 1 -1.7383 1.0275 -11.7893 38 1 -0.8817 -2.0305 -10.4726 39 1 -2.9881 -2.0958 -9.2570 40 1 -1.4765 2.6660 -8.4624 41 1 0.7008 -2.0161 -2.9916 42 1 -0.4237 -0.5992 -3.1632 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12113342_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:57 Heat of formation + Delta-G solvation = -50.151067 kcal Electronic energy + Delta-G solvation = -24369.919647 eV Core-core repulsion = 20653.361138 eV Total energy + Delta-G solvation = -3716.558509 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.89497 -41.58156 -40.82644 -38.80883 -37.80565 -35.43053 -33.72466 -33.17037 -31.15732 -28.52417 -28.43171 -26.76433 -26.60849 -25.74183 -24.29835 -22.85717 -21.21802 -20.49949 -19.45035 -18.56989 -18.22000 -18.02113 -17.66330 -16.92164 -16.83323 -16.38508 -16.19452 -15.89916 -15.48188 -15.02983 -14.95809 -14.72846 -14.55888 -14.37053 -14.14817 -13.95470 -13.92139 -13.60073 -13.37165 -13.19060 -12.89816 -12.86207 -12.74071 -12.67110 -12.49862 -12.09379 -11.91404 -11.63289 -11.34942 -11.16646 -10.75895 -10.68410 -10.38594 -10.35211 -8.80116 -5.04838 -0.10670 0.10338 1.20032 1.58904 1.86793 1.89757 2.49158 2.69190 3.01696 3.15293 3.31303 3.47545 3.52889 3.62717 3.79549 3.80726 3.84241 3.88247 3.94388 4.03534 4.06078 4.23552 4.34010 4.45254 4.51423 4.59087 4.63394 4.71195 4.73794 4.76039 4.76759 4.84809 4.86900 4.95004 4.96706 4.99043 5.02997 5.11101 5.25800 5.30217 5.39425 5.92345 6.12928 6.37571 6.55885 6.91542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.179 4.179 4 C -0.139 4.139 5 O -0.360 6.360 6 C 0.061 3.939 7 H 0.088 0.912 8 C -0.145 4.145 9 C 0.133 3.867 10 H 0.114 0.886 11 N -0.700 5.700 12 C 0.392 3.608 13 N -0.509 5.509 14 C 0.143 3.857 15 C -0.163 4.163 16 C -0.059 4.059 17 O -0.547 6.547 18 Si 0.681 3.319 19 C -0.034 4.034 20 C -0.018 4.018 21 F -0.132 7.132 22 C -0.166 4.166 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.412 0.588 35 H 0.155 0.845 36 H 0.076 0.924 37 H 0.384 0.616 38 H -0.247 1.247 39 H -0.251 1.251 40 H 0.152 0.848 41 H 0.100 0.900 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.007 0.334 -1.790 3.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.066 3.934 3 C -0.236 4.236 4 C -0.196 4.196 5 O -0.279 6.279 6 C 0.003 3.997 7 H 0.105 0.895 8 C -0.183 4.183 9 C 0.027 3.973 10 H 0.132 0.868 11 N -0.333 5.333 12 C 0.154 3.846 13 N -0.225 5.225 14 C -0.014 4.014 15 C -0.168 4.168 16 C -0.171 4.171 17 O -0.353 6.353 18 Si 0.582 3.418 19 C -0.061 4.061 20 C -0.044 4.044 21 F -0.111 7.111 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.172 0.828 36 H 0.094 0.906 37 H 0.232 0.768 38 H -0.171 1.171 39 H -0.176 1.176 40 H 0.169 0.831 41 H 0.118 0.882 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.889 -1.421 -0.543 2.425 hybrid contribution -0.396 2.057 0.299 2.116 sum -2.284 0.637 -0.243 2.384 Atomic orbital electron populations 1.22466 0.95508 1.02927 1.02436 1.21541 0.93205 0.92060 0.86633 1.22469 1.02354 0.96305 1.02507 1.21768 1.02029 1.00928 0.94872 1.88041 1.73776 1.53397 1.12697 1.23724 0.95575 0.96773 0.83609 0.89481 1.23654 0.96881 1.03986 0.93765 1.21616 0.93873 0.87431 0.94349 0.86842 1.44228 1.57749 1.09826 1.21464 1.18368 0.90346 0.88162 0.87704 1.67270 1.19601 1.23996 1.11633 1.22175 0.91243 0.97813 0.90158 1.19937 1.05277 0.93368 0.98183 1.24466 0.95844 1.09968 0.86778 1.86496 1.50538 1.78366 1.19919 0.95093 0.83244 0.74393 0.89062 1.21267 0.94210 0.99064 0.91528 1.17960 1.08849 0.80922 0.96678 1.91493 1.93937 1.43280 1.82406 1.24033 0.99230 1.01863 0.95381 0.92454 0.91515 0.91636 0.91315 0.91551 0.92380 0.91720 0.91722 0.91059 0.90492 0.87538 0.75097 0.82807 0.90599 0.76844 1.17114 1.17559 0.83068 0.88194 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.01 8.38 37.16 0.31 0.30 16 2 C 0.10 0.06 1.11 -90.62 -0.10 -0.04 16 3 C -0.18 0.05 8.38 37.15 0.31 0.36 16 4 C -0.14 -0.01 8.84 37.16 0.33 0.32 16 5 O -0.36 -0.73 10.00 -35.23 -0.35 -1.09 16 6 C 0.06 0.03 2.70 -25.92 -0.07 -0.04 16 7 H 0.09 -0.02 5.54 -51.93 -0.29 -0.31 16 8 C -0.14 0.00 7.66 -25.92 -0.20 -0.20 16 9 C 0.13 0.10 4.35 -67.12 -0.29 -0.19 16 10 H 0.11 0.20 7.41 -51.93 -0.38 -0.18 16 11 N -0.70 -0.84 5.42 -53.06 -0.29 -1.13 16 12 C 0.39 1.20 7.49 -154.85 -1.16 0.04 16 13 N -0.51 -1.93 9.13 -12.36 -0.11 -2.04 16 14 C 0.14 0.40 9.84 -17.57 -0.17 0.23 16 15 C -0.16 -0.31 5.39 -104.47 -0.56 -0.87 16 16 C -0.06 0.05 2.81 36.01 0.10 0.15 16 17 O -0.55 0.30 12.82 -35.23 -0.45 -0.15 16 18 Si 0.68 -1.30 29.87 -169.99 -5.08 -6.38 16 19 C -0.03 -0.07 9.82 -39.26 -0.39 -0.45 16 20 C -0.02 -0.05 7.35 -39.10 -0.29 -0.34 16 21 F -0.13 -0.38 16.65 2.25 0.04 -0.34 16 22 C -0.17 -0.12 7.71 -25.92 -0.20 -0.32 16 23 H 0.06 0.01 7.02 -51.93 -0.36 -0.36 16 24 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 26 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 -0.03 6.24 -51.93 -0.32 -0.36 16 29 H 0.06 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.41 -0.03 8.18 -40.82 -0.33 -0.36 16 35 H 0.16 0.26 4.87 -52.49 -0.26 0.01 16 36 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.38 -2.15 8.74 45.56 0.40 -1.75 16 38 H -0.25 -0.28 7.05 56.52 0.40 0.12 16 39 H -0.25 -0.13 7.11 56.52 0.40 0.28 16 40 H 0.15 0.06 8.06 -52.49 -0.42 -0.37 16 41 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 343.46 15.07 5.18 5.18 Total: 0.00 -5.78 343.46 -9.69 -15.47 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -6.24 Total: -8.49 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.04 kcal Atomic # 7 Polarization: -2.76 SS G_CDS: -0.40 Total: -3.17 kcal Atomic # 8 Polarization: -0.43 SS G_CDS: -0.80 Total: -1.23 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.04 Total: -0.34 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.08 Total: -6.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -5.78 -9.69 -15.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.682 kcal (2) G-P(sol) polarization free energy of solvation -5.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds