Wall clock time and date at job start Tue Mar 9 2021 13:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.42906 * 109.47321 * 240.00014 * 2 1 3 6 6 C 1.42898 * 113.99821 * 59.99868 * 5 2 1 7 7 H 1.09003 * 112.85082 * 18.80404 * 6 5 2 8 8 C 1.53775 * 113.61498 * 150.00151 * 6 5 2 9 9 C 1.53784 * 87.08185 * 139.98321 * 8 6 5 10 10 H 1.09004 * 113.61052 * 220.02337 * 9 8 6 11 11 N 1.46492 * 113.61290 * 89.20479 * 9 8 6 12 12 C 1.39148 * 120.00119 * 155.00188 * 11 9 8 13 13 N 1.32337 * 119.71443 * 359.97438 * 12 11 9 14 14 C 1.32011 * 121.64388 * 179.97438 * 13 12 11 15 15 C 1.37984 * 120.90205 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.32695 * 179.97438 * 15 14 13 17 17 O 1.42888 * 109.47102 * 244.99743 * 16 15 14 18 18 Si 1.86300 * 109.47113 * 5.00167 * 16 15 14 19 19 C 1.38908 * 119.34582 * 359.97438 * 15 14 13 20 20 C 1.38442 * 118.48355 * 359.75163 * 19 15 14 21 21 F 1.35102 * 120.47025 * 180.26950 * 20 19 15 22 22 C 1.53781 * 113.61403 * 247.50173 * 6 5 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 27 27 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 32 32 H 1.09000 * 113.61888 * 254.53371 * 8 6 5 33 33 H 1.08999 * 113.61319 * 25.35256 * 8 6 5 34 34 H 0.96999 * 120.00205 * 334.99470 * 11 9 8 35 35 H 1.07999 * 119.54613 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.46705 * 124.99466 * 16 15 14 37 37 H 0.96700 * 114.00310 * 179.97438 * 17 16 15 38 38 H 1.48503 * 109.99475 * 299.99737 * 18 16 15 39 39 H 1.48499 * 110.00311 * 61.31553 * 18 16 15 40 40 H 1.07995 * 120.75672 * 180.02562 * 19 15 14 41 41 H 1.08997 * 113.61644 * 334.56221 * 22 6 5 42 42 H 1.09003 * 113.61323 * 105.47351 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0064 -0.6737 -1.1668 6 6 1.5847 -0.0773 -2.3951 7 1 1.2523 0.9535 -2.2729 8 6 2.5837 -0.2699 -3.5482 9 6 1.3667 -0.5003 -4.4596 10 1 1.5124 -1.2968 -5.1894 11 7 0.8396 0.7292 -5.0568 12 6 0.1282 0.6730 -6.2514 13 7 -0.0685 -0.4941 -6.8434 14 6 -0.7382 -0.5915 -7.9769 15 6 -1.2605 0.5289 -8.5899 16 6 -2.0223 0.4027 -9.8841 17 8 -1.3055 1.0685 -10.9256 18 14 -2.2166 -1.3987 -10.3173 19 6 -1.0772 1.7742 -8.0025 20 6 -0.3758 1.8453 -6.8110 21 9 -0.1787 3.0351 -6.2020 22 6 0.6076 -0.9503 -3.2001 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6768 1.9562 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 -1.7489 1.2492 30 1 3.1300 -0.7217 1.2490 31 1 1.6767 -0.2075 2.1393 32 1 3.1477 0.6303 -3.7922 33 1 3.2180 -1.1489 -3.4341 34 1 0.9865 1.5824 -4.6195 35 1 -0.8791 -1.5614 -8.4305 36 1 -3.0065 0.8576 -9.7721 37 1 -1.7383 1.0275 -11.7893 38 1 -0.8817 -2.0305 -10.4726 39 1 -2.9881 -2.0958 -9.2570 40 1 -1.4765 2.6660 -8.4624 41 1 0.7008 -2.0161 -2.9916 42 1 -0.4237 -0.5992 -3.1632 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12113342_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:56 Heat of formation + Delta-G solvation = -46.255986 kcal Electronic energy + Delta-G solvation = -24369.750744 eV Core-core repulsion = 20653.361138 eV Total energy + Delta-G solvation = -3716.389606 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08727 -41.71049 -40.90875 -38.86154 -37.74665 -35.50299 -33.79327 -33.31704 -31.25134 -28.51812 -28.42339 -26.81817 -26.65575 -25.85792 -24.40877 -22.95611 -21.26520 -20.57410 -19.57898 -18.56681 -18.29280 -18.12380 -17.72158 -17.07767 -16.91838 -16.45749 -16.28277 -15.94534 -15.48490 -15.10671 -15.04960 -14.77360 -14.60072 -14.43638 -14.20733 -14.07714 -13.96750 -13.67669 -13.38307 -13.18478 -12.90685 -12.88840 -12.75739 -12.68993 -12.50902 -12.12710 -11.95558 -11.68157 -11.39587 -11.24340 -10.92225 -10.84437 -10.45258 -10.25682 -8.93479 -4.92722 -0.28494 -0.03831 1.31126 1.68416 1.76303 1.98612 2.33664 2.66108 2.85899 3.02981 3.31190 3.40696 3.47412 3.59813 3.70834 3.75645 3.83491 3.85438 3.92255 4.02558 4.05152 4.26263 4.29310 4.35179 4.54757 4.56852 4.59703 4.67420 4.68878 4.72540 4.76151 4.84176 4.84858 4.86714 4.90644 4.93454 4.99304 5.10562 5.26329 5.27555 5.30831 5.80554 6.01812 6.33509 6.77590 6.94658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 C -0.177 4.177 4 C -0.139 4.139 5 O -0.378 6.378 6 C 0.065 3.935 7 H 0.096 0.904 8 C -0.137 4.137 9 C 0.136 3.864 10 H 0.101 0.899 11 N -0.695 5.695 12 C 0.381 3.619 13 N -0.528 5.528 14 C 0.127 3.873 15 C -0.169 4.169 16 C -0.064 4.064 17 O -0.565 6.565 18 Si 0.771 3.229 19 C -0.036 4.036 20 C -0.027 4.027 21 F -0.134 7.134 22 C -0.162 4.162 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.418 0.582 35 H 0.157 0.843 36 H 0.101 0.899 37 H 0.406 0.594 38 H -0.293 1.293 39 H -0.285 1.285 40 H 0.169 0.831 41 H 0.094 0.906 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 1.272 -2.169 4.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.234 4.234 4 C -0.196 4.196 5 O -0.297 6.297 6 C 0.007 3.993 7 H 0.113 0.887 8 C -0.176 4.176 9 C 0.030 3.970 10 H 0.119 0.881 11 N -0.328 5.328 12 C 0.142 3.858 13 N -0.245 5.245 14 C -0.030 4.030 15 C -0.174 4.174 16 C -0.175 4.175 17 O -0.375 6.375 18 Si 0.677 3.323 19 C -0.062 4.062 20 C -0.054 4.054 21 F -0.113 7.113 22 C -0.201 4.201 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.256 0.744 35 H 0.174 0.826 36 H 0.119 0.881 37 H 0.257 0.743 38 H -0.220 1.220 39 H -0.212 1.212 40 H 0.186 0.814 41 H 0.113 0.887 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.489 -0.457 -0.942 2.700 hybrid contribution -0.201 1.724 0.414 1.784 sum -2.690 1.267 -0.529 3.020 Atomic orbital electron populations 1.22440 0.95184 1.02554 1.02885 1.21688 0.93515 0.92561 0.86314 1.22450 1.02057 0.95765 1.03153 1.21792 1.01772 1.00754 0.95298 1.88019 1.74102 1.54171 1.13441 1.23737 0.95412 0.96923 0.83243 0.88664 1.23599 0.96542 1.04290 0.93138 1.21542 0.94381 0.87112 0.94005 0.88062 1.44219 1.57385 1.10184 1.21031 1.18522 0.90782 0.88196 0.88252 1.67246 1.20343 1.24600 1.12307 1.22386 0.91700 0.98552 0.90326 1.20276 1.04912 0.92911 0.99273 1.24592 0.96298 1.10915 0.85661 1.86440 1.51447 1.78370 1.21263 0.94165 0.79404 0.72001 0.86723 1.21518 0.93760 0.99762 0.91155 1.18077 1.09330 0.80783 0.97166 1.91483 1.94010 1.43272 1.82510 1.23972 0.98972 1.01650 0.95528 0.92569 0.90475 0.92416 0.90338 0.91986 0.92074 0.92342 0.92127 0.89700 0.89702 0.87644 0.74400 0.82606 0.88110 0.74277 1.22024 1.21231 0.81390 0.88707 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.03 8.38 71.98 0.60 0.58 16 2 C 0.10 0.12 1.11 -10.79 -0.01 0.11 16 3 C -0.18 0.16 8.38 71.98 0.60 0.77 16 4 C -0.14 -0.03 8.84 71.98 0.64 0.60 16 5 O -0.38 -1.73 10.00 -148.98 -1.49 -3.22 16 6 C 0.06 0.09 2.70 31.12 0.08 0.17 16 7 H 0.10 -0.05 5.54 -2.39 -0.01 -0.06 16 8 C -0.14 -0.07 7.66 31.12 0.24 0.17 16 9 C 0.14 0.35 4.35 45.52 0.20 0.55 16 10 H 0.10 0.54 7.41 -2.38 -0.02 0.52 16 11 N -0.70 -2.25 5.42 -321.78 -1.74 -4.00 16 12 C 0.38 2.71 7.49 133.08 1.00 3.71 16 13 N -0.53 -4.76 9.13 -193.03 -1.76 -6.52 16 14 C 0.13 0.86 9.84 84.61 0.83 1.70 16 15 C -0.17 -0.65 5.39 -19.76 -0.11 -0.76 16 16 C -0.06 0.17 2.81 71.24 0.20 0.37 16 17 O -0.56 1.34 12.82 -148.98 -1.91 -0.57 16 18 Si 0.77 -2.97 29.87 68.60 2.05 -0.92 16 19 C -0.04 -0.14 9.82 22.48 0.22 0.08 16 20 C -0.03 -0.17 7.35 22.58 0.17 0.00 16 21 F -0.13 -0.78 16.65 44.97 0.75 -0.03 16 22 C -0.16 -0.41 7.71 31.12 0.24 -0.17 16 23 H 0.06 0.02 7.02 -2.39 -0.02 0.00 16 24 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 26 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 -0.10 6.24 -2.39 -0.01 -0.11 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.42 0.13 8.18 -92.71 -0.76 -0.62 16 35 H 0.16 0.79 4.87 -2.91 -0.01 0.77 16 36 H 0.10 -0.75 7.96 -2.39 -0.02 -0.76 16 37 H 0.41 -5.26 8.74 -74.06 -0.65 -5.90 16 38 H -0.29 -1.07 7.05 99.48 0.70 -0.37 16 39 H -0.29 -0.48 7.11 99.48 0.71 0.22 16 40 H 0.17 -0.04 8.06 -2.91 -0.02 -0.06 16 41 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 Total: 0.00 -14.20 343.46 0.46 -13.74 By element: Atomic # 1 Polarization: -6.04 SS G_CDS: -0.33 Total: -6.37 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.90 Total: 7.89 kcal Atomic # 7 Polarization: -7.01 SS G_CDS: -3.51 Total: -10.51 kcal Atomic # 8 Polarization: -0.39 SS G_CDS: -3.40 Total: -3.79 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.75 Total: -0.03 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.05 Total: -0.92 kcal Total: -14.20 0.46 -13.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.517 kcal (2) G-P(sol) polarization free energy of solvation -14.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds