Wall clock time and date at job start Tue Mar 9 2021 13:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33320 * 125.95570 * 2 1 4 4 C 1.50702 * 122.70831 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47012 * 329.99738 * 4 3 2 6 6 Si 1.86305 * 109.46932 * 209.99893 * 4 3 2 7 7 N 1.32121 * 114.58052 * 179.75194 * 3 2 1 8 8 C 1.29689 * 116.86661 * 0.46959 * 7 3 2 9 9 N 1.38603 * 124.94850 * 179.81167 * 8 7 3 10 10 C 1.46504 * 120.00031 * 179.72090 * 9 8 7 11 11 H 1.09001 * 109.46891 * 325.00599 * 10 9 8 12 12 C 1.53006 * 109.46883 * 85.00164 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 10 15 15 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 16 16 O 1.42903 * 109.46726 * 180.02562 * 14 13 12 17 17 C 1.42902 * 113.99825 * 149.99984 * 16 14 13 18 18 C 1.53004 * 109.47124 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47011 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47010 * 175.00013 * 19 18 17 21 21 C 1.52998 * 109.47400 * 295.00003 * 19 18 17 22 22 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 23 23 C 1.52997 * 109.47417 * 205.00250 * 10 9 8 24 24 S 1.70958 * 110.09985 * 359.55215 * 8 7 3 25 25 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47041 * 299.97877 * 1 2 3 27 27 H 1.09009 * 109.46757 * 59.97284 * 1 2 3 28 28 H 1.09002 * 109.47281 * 89.99859 * 4 3 2 29 29 H 0.96697 * 113.99676 * 180.02562 * 5 4 3 30 30 H 1.48504 * 109.99986 * 298.67920 * 6 4 3 31 31 H 1.48499 * 110.00204 * 59.99923 * 6 4 3 32 32 H 0.97003 * 120.00344 * 359.72744 * 9 8 7 33 33 H 1.08998 * 109.46505 * 59.99948 * 12 10 9 34 34 H 1.08996 * 109.46884 * 300.00829 * 12 10 9 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46832 * 60.00321 * 13 12 10 37 37 H 1.09001 * 109.47093 * 299.99722 * 17 16 14 38 38 H 1.09000 * 109.47241 * 59.99946 * 17 16 14 39 39 H 1.09001 * 109.47058 * 299.99926 * 18 17 16 40 40 H 1.09000 * 109.46957 * 59.99954 * 18 17 16 41 41 H 1.09001 * 109.47399 * 55.00300 * 19 18 17 42 42 H 1.08999 * 109.47287 * 60.00122 * 20 19 18 43 43 H 1.08997 * 109.46908 * 180.02562 * 20 19 18 44 44 H 1.08994 * 109.46789 * 299.99859 * 20 19 18 45 45 H 1.09001 * 109.47087 * 300.00488 * 21 19 18 46 46 H 1.09003 * 109.47150 * 59.99758 * 21 19 18 47 47 H 1.08999 * 109.47714 * 180.02562 * 21 19 18 48 48 H 1.08992 * 109.47554 * 59.99639 * 22 14 13 49 49 H 1.09004 * 109.47108 * 179.97438 * 22 14 13 50 50 H 1.09002 * 109.47045 * 60.00127 * 23 10 9 51 51 H 1.09001 * 109.47375 * 300.00052 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4829 0.0006 5 8 0.4811 2.5023 -0.6727 6 14 2.9322 3.6150 -0.8778 7 7 3.5850 0.8186 0.0052 8 6 3.9314 -0.4311 0.0001 9 7 5.2383 -0.8928 0.0005 10 6 5.5064 -2.3331 0.0006 11 1 4.7450 -2.8443 0.5897 12 6 5.4767 -2.8574 -1.4365 13 6 5.7560 -4.3617 -1.4365 14 6 7.1341 -4.6244 -0.8261 15 1 7.8958 -4.1135 -1.4151 16 8 7.3952 -6.0294 -0.8266 17 6 8.7801 -6.3632 -0.9396 18 6 8.9406 -7.8847 -0.9291 19 6 10.4232 -8.2420 -1.0508 20 6 10.5957 -9.7562 -0.9152 21 6 10.9467 -7.7893 -2.4153 22 6 7.1638 -4.1002 0.6110 23 6 6.8848 -2.5953 0.6107 24 16 2.5413 -1.4262 0.0001 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.6096 2.8211 1.0284 29 1 0.0690 3.3762 -0.7108 30 1 4.2371 3.6283 -0.1690 31 1 3.1205 3.1647 -2.2803 32 1 5.9755 -0.2623 0.0009 33 1 6.2380 -2.3461 -2.0256 34 1 4.4947 -2.6705 -1.8712 35 1 5.7353 -4.7351 -2.4603 36 1 4.9943 -4.8726 -0.8475 37 1 9.1755 -5.9622 -1.8730 38 1 9.3269 -5.9347 -0.0996 39 1 8.5453 -8.2853 0.0044 40 1 8.3938 -8.3135 -1.7689 41 1 10.9838 -7.7405 -0.2619 42 1 10.0352 -10.2579 -1.7041 43 1 11.6521 -10.0107 -1.0015 44 1 10.2229 -10.0787 0.0568 45 1 10.3861 -8.2908 -3.2042 46 1 10.8238 -6.7105 -2.5119 47 1 12.0029 -8.0442 -2.5022 48 1 6.4022 -4.6111 1.2000 49 1 8.1456 -4.2878 1.0460 50 1 6.9059 -2.2218 1.6345 51 1 7.6462 -2.0841 0.0216 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12222502_15704122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:23 Heat of formation + Delta-G solvation = -57.574315 kcal Electronic energy + Delta-G solvation = -27574.344387 eV Core-core repulsion = 23793.919727 eV Total energy + Delta-G solvation = -3780.424659 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05470 -40.52301 -38.84106 -37.67744 -37.11160 -35.34946 -32.78514 -32.07748 -30.83160 -29.63921 -28.44734 -28.14375 -25.52498 -24.67908 -24.07988 -23.80647 -22.97715 -21.51549 -20.89767 -20.09773 -19.24720 -18.17289 -17.82655 -17.27571 -17.07022 -16.76896 -16.30394 -16.15236 -15.82600 -15.58389 -15.39135 -15.04706 -14.96716 -14.66277 -14.39720 -14.17160 -14.04449 -13.88756 -13.78951 -13.49723 -13.42456 -13.29324 -13.16395 -12.99536 -12.86908 -12.82473 -12.53611 -12.34621 -12.23047 -12.03096 -11.98556 -11.78328 -11.69314 -11.61646 -11.52411 -11.46086 -10.97120 -10.57127 -10.43497 -10.29014 -9.92806 -8.56091 -4.80112 0.09836 0.22176 0.83841 1.41465 1.78948 1.92310 1.99060 2.39081 2.54220 3.14126 3.35826 3.47094 3.77614 3.82458 3.83902 3.90908 3.94433 3.99265 4.03570 4.06879 4.17735 4.21733 4.23496 4.25645 4.36976 4.42408 4.43706 4.47091 4.50898 4.54112 4.66437 4.69011 4.73434 4.83273 4.85449 4.89624 4.92163 4.94080 4.94451 4.97234 4.99587 5.01509 5.11917 5.12933 5.20398 5.23066 5.32820 5.38530 5.43404 5.61733 6.24064 6.27688 6.65254 6.95759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.227 4.227 3 C 0.098 3.902 4 C -0.035 4.035 5 O -0.545 6.545 6 Si 0.712 3.288 7 N -0.550 5.550 8 C 0.319 3.681 9 N -0.692 5.692 10 C 0.151 3.849 11 H 0.085 0.915 12 C -0.135 4.135 13 C -0.113 4.113 14 C 0.089 3.911 15 H 0.061 0.939 16 O -0.381 6.381 17 C 0.060 3.940 18 C -0.114 4.114 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.137 4.137 23 C -0.122 4.122 24 S 0.103 5.897 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.385 0.615 30 H -0.253 1.253 31 H -0.264 1.264 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 0.647 0.659 1.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.350 4.350 3 C -0.031 4.031 4 C -0.147 4.147 5 O -0.351 6.351 6 Si 0.612 3.388 7 N -0.277 5.277 8 C -0.052 4.052 9 N -0.332 5.332 10 C 0.046 3.954 11 H 0.103 0.897 12 C -0.174 4.174 13 C -0.151 4.151 14 C 0.032 3.968 15 H 0.079 0.921 16 O -0.300 6.300 17 C -0.016 4.016 18 C -0.152 4.152 19 C -0.114 4.114 20 C -0.205 4.205 21 C -0.210 4.210 22 C -0.175 4.175 23 C -0.160 4.160 24 S 0.352 5.648 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.233 0.767 30 H -0.178 1.178 31 H -0.189 1.189 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.096 0.904 49 H 0.091 0.909 50 H 0.097 0.903 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.663 -0.943 0.209 1.923 hybrid contribution 0.342 0.676 0.321 0.822 sum 2.005 -0.267 0.529 2.091 Atomic orbital electron populations 1.20097 0.86215 1.01383 1.03884 1.25188 1.01543 0.92435 1.15839 1.18903 0.86450 0.95112 1.02647 1.23962 0.93000 0.96251 1.01463 1.86429 1.33906 1.35690 1.79054 0.96204 0.78912 0.84613 0.79085 1.65710 1.17216 1.16876 1.27886 1.23213 0.91957 0.91237 0.98806 1.44040 1.01703 1.06967 1.80519 1.21220 0.98577 0.78728 0.96908 0.89707 1.22043 1.03300 0.95566 0.96481 1.21532 0.96253 0.95045 1.02291 1.22115 0.97389 0.82036 0.95300 0.92053 1.87918 1.24911 1.22593 1.94562 1.22653 0.82473 0.96549 0.99972 1.21590 0.96307 0.93884 1.03394 1.21059 0.95187 0.96891 0.98227 1.21829 1.01881 0.94812 1.01990 1.21937 1.01197 1.01155 0.96681 1.21992 1.03245 0.94410 0.97901 1.21730 0.95275 0.96933 1.02033 1.83979 0.96380 1.10443 1.73999 0.92522 0.90932 0.89188 0.90241 0.76692 1.17750 1.18912 0.75108 0.90887 0.90692 0.90468 0.90539 0.93102 0.93478 0.91043 0.91006 0.91104 0.92472 0.92421 0.92513 0.92426 0.92657 0.92474 0.90445 0.90884 0.90342 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 8.91 36.00 0.32 0.22 16 2 C -0.23 -0.89 6.50 -36.03 -0.23 -1.12 16 3 C 0.10 0.47 5.95 -84.18 -0.50 -0.03 16 4 C -0.03 -0.06 2.93 36.01 0.11 0.05 16 5 O -0.54 -0.07 9.80 -35.23 -0.35 -0.41 16 6 Si 0.71 1.05 32.09 -169.99 -5.45 -4.41 16 7 N -0.55 -3.10 8.96 -11.37 -0.10 -3.20 16 8 C 0.32 1.18 8.22 -87.69 -0.72 0.46 16 9 N -0.69 -0.72 5.23 -55.78 -0.29 -1.02 16 10 C 0.15 -0.12 2.40 -67.93 -0.16 -0.28 16 11 H 0.08 -0.03 7.26 -51.93 -0.38 -0.41 16 12 C -0.13 0.10 5.51 -26.73 -0.15 -0.04 16 13 C -0.11 0.08 5.57 -26.73 -0.15 -0.07 16 14 C 0.09 -0.05 2.61 -26.73 -0.07 -0.12 16 15 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 16 O -0.38 -0.50 9.99 -35.23 -0.35 -0.86 16 17 C 0.06 -0.01 5.50 37.16 0.20 0.20 16 18 C -0.11 0.03 5.05 -26.73 -0.14 -0.11 16 19 C -0.10 0.08 2.92 -90.62 -0.26 -0.18 16 20 C -0.15 0.13 9.19 37.16 0.34 0.47 16 21 C -0.15 0.16 8.95 37.16 0.33 0.49 16 22 C -0.14 0.19 5.54 -26.71 -0.15 0.04 16 23 C -0.12 0.24 5.39 -26.71 -0.14 0.10 16 24 S 0.10 0.27 21.69 -107.50 -2.33 -2.06 16 25 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 27 H 0.09 0.18 6.74 -51.92 -0.35 -0.17 16 28 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 29 H 0.38 -1.93 8.74 45.56 0.40 -1.53 16 30 H -0.25 -1.26 7.11 56.52 0.40 -0.86 16 31 H -0.26 -1.49 7.11 56.52 0.40 -1.08 16 32 H 0.41 0.16 8.73 -40.82 -0.36 -0.20 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.07 0.02 8.04 -51.93 -0.42 -0.40 16 35 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.05 -0.03 6.51 -51.93 -0.34 -0.37 16 38 H 0.05 -0.04 7.87 -51.93 -0.41 -0.44 16 39 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 40 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 42 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 43 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 44 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 45 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 46 H 0.05 -0.07 6.56 -51.93 -0.34 -0.41 16 47 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 48 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 49 H 0.07 -0.11 7.87 -51.93 -0.41 -0.52 16 50 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 51 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 LS Contribution 407.44 15.07 6.14 6.14 Total: 0.00 -6.96 407.44 -13.49 -20.44 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: -9.38 Total: -14.71 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.37 Total: 0.07 kcal Atomic # 7 Polarization: -3.82 SS G_CDS: -0.39 Total: -4.21 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -0.70 Total: -1.27 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: -5.45 Total: -4.41 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.33 Total: -2.06 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -6.96 -13.49 -20.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12222502_15704122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.130 kcal (2) G-P(sol) polarization free energy of solvation -6.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds