Wall clock time and date at job start Tue Mar 9 2021 13:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33325 * 125.94967 * 2 1 4 4 C 1.50699 * 122.71256 * 0.06285 * 3 2 1 5 5 O 1.42902 * 109.46768 * 329.97879 * 4 3 2 6 6 Si 1.86304 * 109.47199 * 209.98461 * 4 3 2 7 7 H 1.48496 * 109.47140 * 179.97438 * 6 4 3 8 8 H 1.48500 * 109.46890 * 299.99492 * 6 4 3 9 9 H 1.48497 * 109.47110 * 59.99699 * 6 4 3 10 10 N 1.32124 * 114.57827 * 180.02562 * 3 2 1 11 11 C 1.29677 * 116.86660 * 0.02562 * 10 3 2 12 12 N 1.38617 * 124.95049 * 179.97438 * 11 10 3 13 13 C 1.46500 * 120.00286 * 179.97438 * 12 11 10 14 14 C 1.47195 * 109.47072 * 180.02562 * 13 12 11 15 15 C 7.15991 * 157.47196 * 180.10080 * 2 1 3 16 16 Si 9.01772 * 160.31228 * 180.12414 * 2 1 3 17 17 C 1.86300 * 109.47058 * 281.39000 * 16 15 14 18 18 C 1.86303 * 109.47062 * 41.38851 * 16 15 14 19 19 C 1.86296 * 109.47162 * 161.38887 * 16 15 14 20 20 S 1.70965 * 110.10409 * 359.97438 * 11 10 3 21 21 H 1.08995 * 109.47137 * 89.99836 * 1 2 3 22 22 H 1.08998 * 109.47148 * 209.99564 * 1 2 3 23 23 H 1.09002 * 109.47409 * 329.99525 * 1 2 3 24 24 H 1.08999 * 109.47353 * 89.98291 * 4 3 2 25 25 H 0.96700 * 114.00177 * 180.02562 * 5 4 3 26 26 H 0.96996 * 119.99697 * 359.97438 * 12 11 10 27 27 H 1.09005 * 109.46964 * 300.00312 * 13 12 11 28 28 H 1.08996 * 109.47158 * 59.99434 * 13 12 11 29 29 H 1.08993 * 109.47657 * 60.00039 * 17 16 15 30 30 H 1.09004 * 109.46904 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.46846 * 299.99683 * 17 16 15 32 32 H 1.09004 * 109.47038 * 59.99959 * 18 16 15 33 33 H 1.09004 * 109.47115 * 179.97438 * 18 16 15 34 34 H 1.09001 * 109.47338 * 299.99585 * 18 16 15 35 35 H 1.09000 * 109.47180 * 59.99437 * 19 16 15 36 36 H 1.08994 * 109.47281 * 180.02562 * 19 16 15 37 37 H 1.09004 * 109.47080 * 300.00128 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0014 5 8 0.4809 2.5026 -0.6716 6 14 2.9317 3.6156 -0.8768 7 1 2.3911 4.9987 -0.8759 8 1 4.2416 3.5953 -0.1775 9 1 3.1110 3.1556 -2.2773 10 7 3.5850 0.8188 -0.0005 11 6 3.9314 -0.4308 -0.0015 12 7 5.2385 -0.8925 -0.0027 13 6 5.5066 -2.3328 -0.0032 14 6 6.9608 -2.5611 -0.0038 15 6 8.1205 -2.7432 -0.0048 16 14 9.9976 -3.0380 -0.0066 17 6 10.5588 -3.4773 1.7147 18 6 10.4055 -4.4360 -1.1685 19 6 10.8688 -1.4899 -0.5677 20 16 2.5413 -1.4260 -0.0011 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6098 2.8207 1.0294 25 1 0.0686 3.3765 -0.7092 26 1 5.9755 -0.2620 -0.0032 27 1 5.0687 -2.7842 0.8871 28 1 5.0672 -2.7839 -0.8927 29 1 10.0491 -4.3830 2.0431 30 1 11.6357 -3.6459 1.7138 31 1 10.3201 -2.6593 2.3944 32 1 10.0771 -4.1790 -2.1756 33 1 11.4824 -4.6048 -1.1698 34 1 9.8958 -5.3419 -0.8401 35 1 10.6300 -0.6719 0.1120 36 1 11.9455 -1.6591 -0.5692 37 1 10.5404 -1.2329 -1.5748 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12297344_15704122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:47 Heat of formation + Delta-G solvation = 20.164292 kcal Electronic energy + Delta-G solvation = -16991.361528 eV Core-core repulsion = 14213.320530 eV Total energy + Delta-G solvation = -2778.040998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.08523 -38.25972 -37.17948 -33.98379 -32.52673 -29.66376 -29.44925 -28.31250 -28.29788 -27.55234 -25.57156 -24.20547 -20.91484 -19.48306 -18.36794 -18.23031 -17.34284 -16.65175 -16.23897 -16.10481 -15.62349 -15.15537 -14.65559 -14.52904 -14.13542 -13.92298 -13.90922 -13.88949 -13.78651 -13.44934 -13.19654 -13.17831 -13.00522 -12.92969 -12.41158 -12.24900 -12.09388 -11.91620 -11.89171 -11.67483 -11.17302 -10.71632 -10.69479 -10.60795 -10.38946 -10.03869 -8.72857 -0.09042 0.03955 0.65152 1.02834 1.13532 1.35274 1.44819 1.52965 1.64758 1.76274 1.95397 2.08529 2.36483 2.44514 2.54100 3.13800 3.65215 3.94235 4.10777 4.21304 4.23868 4.34835 4.42403 4.80817 4.81811 4.85147 4.85437 4.87011 4.87726 4.90149 4.90439 5.08555 5.35616 5.41324 5.56854 5.65910 5.67352 6.11557 6.47587 6.78706 6.84761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.237 4.237 3 C 0.078 3.922 4 C -0.036 4.036 5 O -0.550 6.550 6 Si 1.004 2.996 7 H -0.244 1.244 8 H -0.277 1.277 9 H -0.295 1.295 10 N -0.576 5.576 11 C 0.304 3.696 12 N -0.694 5.694 13 C 0.228 3.772 14 C -0.237 4.237 15 C -0.379 4.379 16 Si 1.206 2.794 17 C -0.464 4.464 18 C -0.463 4.463 19 C -0.466 4.466 20 S 0.128 5.872 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.403 0.597 26 H 0.413 0.587 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -1.794 1.222 2.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.360 4.360 3 C -0.051 4.051 4 C -0.150 4.150 5 O -0.359 6.359 6 Si 0.830 3.170 7 H -0.167 1.167 8 H -0.203 1.203 9 H -0.221 1.221 10 N -0.304 5.304 11 C -0.067 4.067 12 N -0.335 5.335 13 C 0.105 3.895 14 C -0.237 4.237 15 C -0.412 4.412 16 Si 1.387 2.613 17 C -0.571 4.571 18 C -0.570 4.570 19 C -0.573 4.573 20 S 0.376 5.624 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.254 0.746 26 H 0.251 0.749 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.986 -2.733 0.738 3.458 hybrid contribution -0.504 1.377 0.156 1.474 sum 1.482 -1.356 0.894 2.199 Atomic orbital electron populations 1.20141 0.84931 1.03236 1.02991 1.25466 1.02488 0.92504 1.15536 1.19234 0.86252 0.96665 1.02924 1.23819 0.92968 0.95782 1.02419 1.86443 1.32915 1.37460 1.79062 0.84883 0.77716 0.76746 0.77610 1.16735 1.20253 1.22113 1.65835 1.18123 1.17859 1.28607 1.23325 0.92302 0.91761 0.99285 1.43954 1.01699 1.07202 1.80661 1.18396 0.87705 0.79344 1.04019 1.23736 0.95145 1.03411 1.01443 1.37458 1.08104 0.95967 0.99666 0.76197 0.52989 0.65837 0.66295 1.26245 1.06968 1.05621 1.18279 1.26234 1.06327 1.13663 1.10824 1.26276 1.09028 1.15955 1.06057 1.83731 0.95316 1.09780 1.73566 0.90942 0.91539 0.88759 0.87813 0.74553 0.74883 0.88197 0.88370 0.91029 0.89419 0.91326 0.91238 0.89417 0.90990 0.91334 0.89373 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.11 8.96 71.24 0.64 0.53 16 2 C -0.24 -1.58 6.50 24.57 0.16 -1.42 16 3 C 0.08 0.69 5.95 41.40 0.25 0.93 16 4 C -0.04 -0.10 2.82 71.24 0.20 0.10 16 5 O -0.55 0.31 9.86 -148.98 -1.47 -1.15 16 6 Si 1.00 5.09 27.37 68.60 1.88 6.97 16 7 H -0.24 -0.34 7.11 99.48 0.71 0.37 16 8 H -0.28 -2.77 7.11 99.48 0.71 -2.06 16 9 H -0.30 -3.30 7.11 99.48 0.71 -2.59 16 10 N -0.58 -6.60 8.95 -189.86 -1.70 -8.30 16 11 C 0.30 2.50 8.24 179.32 1.48 3.98 16 12 N -0.69 -3.57 5.69 -360.12 -2.05 -5.62 16 13 C 0.23 0.37 6.00 84.57 0.51 0.88 16 14 C -0.24 -0.89 13.46 31.12 0.42 -0.47 16 15 C -0.38 -0.50 12.14 74.32 0.90 0.40 16 16 Si 1.21 -8.06 14.26 68.60 0.98 -7.09 16 17 C -0.46 2.52 8.65 113.37 0.98 3.50 16 18 C -0.46 2.59 8.65 113.37 0.98 3.57 16 19 C -0.47 2.25 8.65 113.37 0.98 3.23 16 20 S 0.13 0.59 22.32 -56.49 -1.26 -0.67 16 21 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 22 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 23 H 0.09 0.06 6.61 -2.39 -0.02 0.05 16 24 H 0.10 -0.17 7.96 -2.39 -0.02 -0.19 16 25 H 0.40 -4.13 8.74 -74.06 -0.65 -4.77 16 26 H 0.41 2.12 8.57 -92.71 -0.79 1.33 16 27 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 28 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H 0.09 -0.62 7.96 -2.38 -0.02 -0.64 16 31 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 32 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 33 H 0.09 -0.63 7.96 -2.38 -0.02 -0.65 16 34 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 35 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 36 H 0.09 -0.58 7.96 -2.39 -0.02 -0.60 16 37 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 Total: 0.00 -16.64 335.93 4.27 -12.37 By element: Atomic # 1 Polarization: -12.14 SS G_CDS: 0.39 Total: -11.75 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.49 Total: 15.24 kcal Atomic # 7 Polarization: -10.18 SS G_CDS: -3.75 Total: -13.93 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: -1.47 Total: -1.15 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.86 Total: -0.11 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.26 Total: -0.67 kcal Total: -16.64 4.27 -12.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12297344_15704122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.535 kcal (2) G-P(sol) polarization free energy of solvation -16.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds