Wall clock time and date at job start Tue Mar 9 2021 13:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.37984 * 120.32180 * 244.71802 * 4 2 1 6 6 N 1.32008 * 120.89560 * 179.77708 * 5 4 2 7 7 C 1.32338 * 121.64699 * 0.49094 * 6 5 4 8 8 N 1.39145 * 119.71629 * 179.75183 * 7 6 5 9 9 C 1.46500 * 120.00165 * 0.02856 * 8 7 6 10 10 H 1.09002 * 109.47122 * 324.99104 * 9 8 7 11 11 C 1.52999 * 109.47361 * 84.99631 * 9 8 7 12 12 C 1.53002 * 109.47029 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47496 * 300.00505 * 12 11 9 14 14 H 1.09002 * 109.46272 * 299.99692 * 13 12 11 15 15 C 1.52995 * 109.47035 * 179.97438 * 13 12 11 16 16 F 1.39901 * 109.47170 * 299.99668 * 15 13 12 17 17 F 1.39897 * 109.47435 * 60.00024 * 15 13 12 18 18 F 1.39902 * 109.47038 * 179.97438 * 15 13 12 19 19 C 1.52999 * 109.47394 * 59.99718 * 13 12 11 20 20 C 1.53003 * 109.47043 * 300.00174 * 19 13 12 21 21 C 1.39340 * 120.56670 * 359.77793 * 7 6 5 22 22 F 1.35093 * 120.47389 * 179.97438 * 21 7 6 23 23 C 1.38448 * 119.05457 * 359.97397 * 21 7 6 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 26 26 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.07997 * 119.55001 * 0.02562 * 5 4 2 29 29 H 0.97005 * 119.99976 * 180.02562 * 8 7 6 30 30 H 1.08996 * 109.47181 * 299.99890 * 11 9 8 31 31 H 1.09003 * 109.46693 * 60.00225 * 11 9 8 32 32 H 1.09000 * 109.47067 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.46653 * 60.00276 * 12 11 9 34 34 H 1.08996 * 109.47181 * 180.02562 * 19 13 12 35 35 H 1.09006 * 109.47177 * 59.99971 * 19 13 12 36 36 H 1.08995 * 109.47420 * 299.99850 * 20 19 13 37 37 H 1.08999 * 109.47027 * 179.97438 * 20 19 13 38 38 H 1.07994 * 120.76048 * 180.02562 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6430 -0.0213 2.1911 6 7 3.0844 -0.6313 3.2754 7 6 2.8730 -1.9214 3.4810 8 7 3.3610 -2.5247 4.6360 9 6 4.1046 -1.7322 5.6184 10 1 4.6985 -0.9779 5.1022 11 6 3.1217 -1.0451 6.5686 12 6 3.8984 -0.2179 7.5950 13 6 4.8240 -1.1364 8.3953 14 1 4.2298 -1.8906 8.9112 15 6 5.6011 -0.3090 9.4211 16 9 6.3637 0.6587 8.7585 17 9 4.7028 0.3196 10.2901 18 9 6.4470 -1.1490 10.1533 19 6 5.8068 -1.8235 7.4451 20 6 5.0302 -2.6508 6.4188 21 6 2.1665 -2.6808 2.5506 22 9 1.9523 -3.9978 2.7622 23 6 1.6872 -2.0665 1.4062 24 1 -0.3934 0.4418 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4678 -1.2086 28 1 2.8381 1.0322 2.0558 29 1 3.2088 -3.4702 4.7907 30 1 2.4622 -0.3910 5.9984 31 1 2.5279 -1.7994 7.0848 32 1 3.1982 0.2720 8.2716 33 1 4.4926 0.5364 7.0790 34 1 6.4659 -2.4782 8.0152 35 1 6.4010 -1.0692 6.9291 36 1 4.4361 -3.4051 6.9346 37 1 5.7303 -3.1399 5.7416 38 1 1.1358 -2.6287 0.6672 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12301706_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:41 Heat of formation + Delta-G solvation = -193.248122 kcal Electronic energy + Delta-G solvation = -27509.802110 eV Core-core repulsion = 22852.896332 eV Total energy + Delta-G solvation = -4656.905779 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.10323 -49.94894 -48.59694 -48.57668 -41.47212 -39.92424 -37.94707 -36.21295 -33.32559 -32.49402 -31.89586 -30.45461 -26.95924 -25.99238 -24.75824 -23.89505 -23.03164 -22.42351 -21.21031 -19.51321 -19.25014 -19.09578 -18.56420 -18.47464 -18.31061 -17.56164 -17.00065 -16.55302 -16.07920 -15.91438 -15.69880 -15.62350 -15.38488 -15.34771 -15.07893 -14.95077 -14.74838 -14.74469 -14.65780 -14.45896 -14.31904 -14.09687 -13.71396 -13.62656 -13.28887 -13.24178 -12.57776 -12.48718 -12.19993 -12.15336 -11.98314 -11.86233 -11.37692 -11.09411 -10.68810 -10.65607 -10.40531 -8.75573 -4.97131 -0.07385 0.11453 1.32444 1.67114 1.77037 1.99165 2.01040 2.55371 2.82353 2.98159 3.04255 3.05900 3.28968 3.50960 3.62707 3.68130 3.69110 3.86850 3.95382 3.98127 4.12459 4.13559 4.27684 4.32562 4.41970 4.43549 4.46987 4.67016 4.73689 4.74749 4.90776 4.99485 5.00063 5.07919 5.10010 5.20991 5.28662 5.45177 5.99220 6.21008 6.80154 6.97238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.058 4.058 3 Si 0.773 3.227 4 C -0.207 4.207 5 C 0.149 3.851 6 N -0.523 5.523 7 C 0.385 3.615 8 N -0.710 5.710 9 C 0.156 3.844 10 H 0.084 0.916 11 C -0.116 4.116 12 C -0.112 4.112 13 C -0.126 4.126 14 H 0.131 0.869 15 C 0.449 3.551 16 F -0.190 7.190 17 F -0.192 7.192 18 F -0.191 7.191 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.038 4.038 22 F -0.141 7.141 23 C -0.042 4.042 24 H 0.396 0.604 25 H 0.110 0.890 26 H -0.281 1.281 27 H -0.298 1.298 28 H 0.184 0.816 29 H 0.416 0.584 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 0.172 0.818 1.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.169 4.169 3 Si 0.679 3.321 4 C -0.213 4.213 5 C -0.008 4.008 6 N -0.240 5.240 7 C 0.146 3.854 8 N -0.342 5.342 9 C 0.051 3.949 10 H 0.102 0.898 11 C -0.155 4.155 12 C -0.150 4.150 13 C -0.145 4.145 14 H 0.149 0.851 15 C 0.395 3.605 16 F -0.171 7.171 17 F -0.173 7.173 18 F -0.173 7.173 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.064 4.064 22 F -0.120 7.120 23 C -0.069 4.069 24 H 0.246 0.754 25 H 0.127 0.873 26 H -0.208 1.208 27 H -0.226 1.226 28 H 0.200 0.800 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.087 0.985 0.664 1.191 hybrid contribution -0.304 -1.580 -0.554 1.701 sum -0.391 -0.594 0.110 0.720 Atomic orbital electron populations 1.86482 1.17238 1.82139 1.50554 1.24976 0.85223 1.10552 0.96144 0.93861 0.78016 0.74846 0.85407 1.20969 1.05614 0.94288 1.00390 1.22681 0.90935 1.00139 0.87058 1.67358 1.25457 1.07310 1.23855 1.18553 0.90454 0.89104 0.87273 1.44694 1.58989 1.12279 1.18228 1.21029 0.92080 0.93531 0.88232 0.89832 1.21801 0.97949 0.99444 0.96309 1.21532 0.98140 0.97488 0.97808 1.22593 0.98048 0.98680 0.95193 0.85129 1.21007 0.78293 0.79078 0.82148 1.93165 1.77594 1.65880 1.80475 1.93172 1.67773 1.83951 1.72414 1.93174 1.73227 1.71240 1.79640 1.21536 0.96967 1.00025 0.96481 1.21706 0.98441 0.97895 0.97433 1.18139 1.09702 0.79419 0.99179 1.91464 1.93827 1.31720 1.95011 1.21428 0.95460 0.94970 0.94995 0.75407 0.87278 1.20766 1.22587 0.79972 0.74604 0.91351 0.90849 0.90039 0.90512 0.89436 0.90478 0.89609 0.90110 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.13 12.84 -148.98 -1.91 -0.79 16 2 C -0.06 0.18 2.82 71.24 0.20 0.38 16 3 Si 0.77 -3.64 29.83 68.60 2.05 -1.59 16 4 C -0.21 0.36 5.36 -19.76 -0.11 0.26 16 5 C 0.15 -0.31 9.84 84.61 0.83 0.52 16 6 N -0.52 -0.55 9.20 -193.04 -1.78 -2.33 16 7 C 0.38 0.52 7.47 133.08 0.99 1.51 16 8 N -0.71 1.75 5.22 -324.27 -1.69 0.06 16 9 C 0.16 -0.71 2.47 44.99 0.11 -0.59 16 10 H 0.08 -0.13 7.54 -2.39 -0.02 -0.15 16 11 C -0.12 0.59 5.51 30.59 0.17 0.76 16 12 C -0.11 0.57 4.96 30.60 0.15 0.73 16 13 C -0.13 0.67 2.17 -10.80 -0.02 0.65 16 14 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 15 C 0.45 0.07 2.69 71.98 0.19 0.26 16 16 F -0.19 -0.49 16.28 44.97 0.73 0.24 16 17 F -0.19 -0.52 16.80 44.97 0.76 0.23 16 18 F -0.19 -0.46 16.80 44.97 0.76 0.29 16 19 C -0.11 0.72 4.96 30.59 0.15 0.87 16 20 C -0.12 0.88 5.39 30.60 0.16 1.05 16 21 C -0.04 -0.09 7.35 22.59 0.17 0.08 16 22 F -0.14 -0.55 16.65 44.97 0.75 0.20 16 23 C -0.04 -0.03 9.82 22.48 0.22 0.19 16 24 H 0.40 -3.97 8.70 -74.06 -0.64 -4.61 16 25 H 0.11 -0.22 7.96 -2.39 -0.02 -0.24 16 26 H -0.28 0.03 7.11 99.48 0.71 0.73 16 27 H -0.30 -0.97 7.11 99.48 0.71 -0.26 16 28 H 0.18 -1.34 4.90 -2.91 -0.01 -1.35 16 29 H 0.42 -1.87 8.07 -92.70 -0.75 -2.62 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 -0.40 7.80 -2.39 -0.02 -0.42 16 33 H 0.08 -0.30 7.80 -2.38 -0.02 -0.32 16 34 H 0.09 -0.58 7.80 -2.39 -0.02 -0.60 16 35 H 0.08 -0.39 7.80 -2.38 -0.02 -0.41 16 36 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 Total: 0.00 -13.18 325.78 2.66 -10.53 By element: Atomic # 1 Polarization: -13.27 SS G_CDS: -0.23 Total: -13.49 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 3.23 Total: 6.65 kcal Atomic # 7 Polarization: 1.20 SS G_CDS: -3.47 Total: -2.27 kcal Atomic # 8 Polarization: 1.13 SS G_CDS: -1.91 Total: -0.79 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 2.99 Total: 0.97 kcal Atomic # 14 Polarization: -3.64 SS G_CDS: 2.05 Total: -1.59 kcal Total: -13.18 2.66 -10.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12301706_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.719 kcal (2) G-P(sol) polarization free energy of solvation -13.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds