Wall clock time and date at job start Tue Mar 9 2021 13:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33331 * 125.94793 * 2 1 4 4 C 1.50698 * 122.71040 * 0.02562 * 3 2 1 5 5 O 1.42892 * 109.47478 * 330.00599 * 4 3 2 6 6 Si 1.86300 * 109.46987 * 210.00362 * 4 3 2 7 7 N 1.32124 * 114.57907 * 179.97438 * 3 2 1 8 8 C 1.29694 * 116.86199 * 359.97438 * 7 3 2 9 9 N 1.38610 * 124.94417 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00452 * 0.02562 * 9 8 7 11 11 C 1.46500 * 119.99732 * 179.97438 * 9 8 7 12 12 H 1.09003 * 112.85067 * 5.32603 * 11 9 8 13 13 C 1.53774 * 113.61672 * 136.52883 * 11 9 8 14 14 C 1.53948 * 87.02434 * 139.94934 * 13 11 9 15 15 H 1.09004 * 113.53525 * 89.18651 * 14 13 11 16 16 C 1.50700 * 113.74796 * 220.05900 * 14 13 11 17 17 N 1.34780 * 119.99771 * 277.59652 * 16 14 13 18 18 O 1.21280 * 120.00170 * 97.59369 * 16 14 13 19 19 C 1.53780 * 87.11161 * 334.64044 * 14 13 11 20 20 S 1.70962 * 110.10365 * 0.24236 * 8 7 3 21 21 H 1.09001 * 109.46883 * 90.00616 * 1 2 3 22 22 H 1.09002 * 109.46938 * 209.99946 * 1 2 3 23 23 H 1.09001 * 109.47160 * 330.00433 * 1 2 3 24 24 H 1.09002 * 109.46890 * 90.00965 * 4 3 2 25 25 H 0.96707 * 113.99847 * 299.99610 * 5 4 3 26 26 H 1.48496 * 110.00201 * 58.68439 * 6 4 3 27 27 H 1.48503 * 110.00013 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47114 * 87.64792 * 10 9 8 29 29 H 1.09004 * 109.46770 * 327.65628 * 10 9 8 30 30 H 1.08993 * 109.47221 * 207.65309 * 10 9 8 31 31 H 1.09003 * 113.61726 * 254.53314 * 13 11 9 32 32 H 1.09009 * 113.61420 * 25.42995 * 13 11 9 33 33 H 0.97001 * 119.99957 * 0.02562 * 17 16 14 34 34 H 0.96995 * 119.99863 * 180.02562 * 17 16 14 35 35 H 1.09002 * 113.61273 * 270.81027 * 19 14 13 36 36 H 1.08998 * 113.62032 * 139.90961 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4809 2.5023 -0.6724 6 14 2.9318 3.6152 -0.8779 7 7 3.5851 0.8189 0.0005 8 6 3.9315 -0.4309 0.0015 9 7 5.2385 -0.8925 0.0017 10 6 6.3518 0.0599 0.0013 11 6 5.5066 -2.3327 0.0034 12 1 4.6008 -2.9320 -0.0888 13 6 6.6243 -2.7524 -0.9658 14 6 7.0966 -3.7274 0.1280 15 1 6.6262 -4.7089 0.0688 16 6 8.5953 -3.8041 0.2666 17 7 9.3091 -4.5925 -0.5613 18 8 9.1590 -3.1565 1.1231 19 6 6.4313 -2.7858 1.1456 20 16 2.5414 -1.4260 -0.0050 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6096 2.8212 1.0284 25 1 0.5228 2.2127 -1.5942 26 1 3.1445 3.1465 -2.2708 27 1 2.4027 5.0028 -0.8837 28 1 6.6004 0.3285 1.0280 29 1 6.0634 0.9556 -0.5489 30 1 7.2195 -0.3958 -0.4755 31 1 6.2590 -3.2477 -1.8655 32 1 7.3384 -1.9570 -1.1796 33 1 8.8583 -5.1102 -1.2466 34 1 10.2737 -4.6422 -0.4718 35 1 7.0924 -1.9996 1.5102 36 1 5.9103 -3.3080 1.9481 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12311540_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:04 Heat of formation + Delta-G solvation = 13.719605 kcal Electronic energy + Delta-G solvation = -20402.715694 eV Core-core repulsion = 17209.418614 eV Total energy + Delta-G solvation = -3193.297080 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71102 -40.92430 -39.33966 -37.78120 -35.85755 -34.67791 -32.69708 -29.55096 -28.75780 -27.07825 -26.89284 -25.53640 -23.74980 -21.82366 -20.57248 -20.08688 -19.50531 -18.43522 -18.01333 -17.81679 -17.23022 -16.77292 -16.51914 -16.07902 -15.81729 -15.58151 -15.30311 -14.64021 -14.60475 -14.11737 -13.95146 -13.71843 -13.58846 -13.36627 -13.24442 -12.97230 -12.77385 -12.59424 -12.33630 -12.15452 -11.91992 -11.74460 -10.96418 -10.83593 -10.77023 -10.53486 -10.33833 -9.97148 -8.45779 -4.65077 0.04819 0.17984 0.81416 1.41340 1.49954 1.70288 1.84641 1.98623 2.14000 2.47080 3.08089 3.21225 3.29444 3.46199 3.46458 3.55971 3.93644 4.08045 4.18442 4.20520 4.38297 4.39338 4.49591 4.54211 4.60041 4.64523 4.75837 4.78260 4.84915 4.92791 5.07817 5.15928 5.32479 5.66876 5.69536 6.02340 6.23171 6.38212 6.98007 7.18112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.241 4.241 3 C 0.069 3.931 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.720 3.280 7 N -0.536 5.536 8 C 0.323 3.677 9 N -0.570 5.570 10 C 0.097 3.903 11 C 0.130 3.870 12 H 0.113 0.887 13 C -0.134 4.134 14 C -0.139 4.139 15 H 0.121 0.879 16 C 0.528 3.472 17 N -0.854 5.854 18 O -0.538 6.538 19 C -0.127 4.127 20 S 0.088 5.912 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.091 0.909 24 H 0.124 0.876 25 H 0.375 0.625 26 H -0.268 1.268 27 H -0.261 1.261 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.403 0.597 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -5.030 -2.836 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.364 4.364 3 C -0.061 4.061 4 C -0.154 4.154 5 O -0.331 6.331 6 Si 0.621 3.379 7 N -0.262 5.262 8 C -0.047 4.047 9 N -0.288 5.288 10 C -0.047 4.047 11 C 0.026 3.974 12 H 0.131 0.869 13 C -0.173 4.173 14 C -0.161 4.161 15 H 0.139 0.861 16 C 0.313 3.687 17 N -0.417 5.417 18 O -0.414 6.414 19 C -0.167 4.167 20 S 0.339 5.661 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.110 0.890 24 H 0.142 0.858 25 H 0.223 0.777 26 H -0.193 1.193 27 H -0.186 1.186 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.125 0.875 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.775 -4.511 -2.326 5.377 hybrid contribution -0.760 -0.328 -0.973 1.277 sum 1.015 -4.838 -3.299 5.944 Atomic orbital electron populations 1.20202 0.86530 1.03209 1.02515 1.25103 1.01227 0.92712 1.17329 1.20102 0.86892 0.97072 1.02032 1.24452 0.91910 0.95413 1.03656 1.86606 1.28543 1.89126 1.28857 0.93639 0.86312 0.76421 0.81552 1.65725 1.16824 1.16378 1.27300 1.23299 0.91156 0.91548 0.98704 1.45844 1.00249 1.05256 1.77448 1.21729 0.87824 0.92695 1.02478 1.22656 0.97956 0.79404 0.97399 0.86918 1.23482 0.98075 0.98550 0.97192 1.22593 0.92543 1.00910 1.00023 0.86144 1.20311 0.89465 0.78425 0.80532 1.43900 1.11815 1.48639 1.37375 1.90779 1.72282 1.43808 1.34507 1.23411 0.97657 0.98989 0.96621 1.83875 0.96694 1.10923 1.74561 0.91383 0.92179 0.89003 0.85816 0.77684 1.19254 1.18627 0.92324 0.90018 0.90924 0.89391 0.88277 0.76911 0.76619 0.87504 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.03 8.95 36.01 0.32 0.30 16 2 C -0.24 -0.47 6.50 -36.02 -0.23 -0.70 16 3 C 0.07 0.17 5.92 -84.18 -0.50 -0.32 16 4 C -0.04 -0.06 2.82 36.00 0.10 0.04 16 5 O -0.53 -0.66 9.89 -35.23 -0.35 -1.01 16 6 Si 0.72 1.03 32.08 -169.99 -5.45 -4.42 16 7 N -0.54 -1.57 8.20 -11.36 -0.09 -1.66 16 8 C 0.32 0.62 7.74 -87.67 -0.68 -0.06 16 9 N -0.57 -0.05 3.19 -175.33 -0.56 -0.61 16 10 C 0.10 -0.06 9.56 59.85 0.57 0.51 16 11 C 0.13 -0.26 4.26 -67.12 -0.29 -0.55 16 12 H 0.11 -0.30 6.66 -51.93 -0.35 -0.65 16 13 C -0.13 0.46 7.15 -25.83 -0.18 0.27 16 14 C -0.14 0.42 4.14 -90.87 -0.38 0.04 16 15 H 0.12 -0.63 8.14 -51.93 -0.42 -1.05 16 16 C 0.53 -0.21 7.64 -10.98 -0.08 -0.29 16 17 N -0.85 2.98 8.87 31.22 0.28 3.26 16 18 O -0.54 -2.36 16.74 5.56 0.09 -2.27 16 19 C -0.13 0.19 7.00 -25.92 -0.18 0.01 16 20 S 0.09 0.08 21.51 -107.50 -2.31 -2.23 16 21 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 22 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 23 H 0.09 0.09 6.61 -51.93 -0.34 -0.26 16 24 H 0.12 0.09 7.96 -51.93 -0.41 -0.32 16 25 H 0.38 -0.40 8.68 45.56 0.40 0.00 16 26 H -0.27 -1.10 7.11 56.52 0.40 -0.70 16 27 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 28 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.08 -0.01 7.68 -51.93 -0.40 -0.41 16 30 H 0.07 -0.13 5.78 -51.93 -0.30 -0.43 16 31 H 0.09 -0.42 8.14 -51.93 -0.42 -0.84 16 32 H 0.10 -0.26 5.92 -51.92 -0.31 -0.57 16 33 H 0.40 -2.57 8.83 -40.82 -0.36 -2.93 16 34 H 0.40 -1.46 8.93 -40.82 -0.36 -1.82 16 35 H 0.11 0.05 6.76 -51.93 -0.35 -0.30 16 36 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 LS Contribution 309.05 15.07 4.66 4.66 Total: 0.00 -7.99 309.05 -9.79 -17.78 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: -4.52 Total: -12.75 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.53 Total: -0.76 kcal Atomic # 7 Polarization: 1.36 SS G_CDS: -0.38 Total: 0.99 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: -0.26 Total: -3.27 kcal Atomic # 14 Polarization: 1.03 SS G_CDS: -5.45 Total: -4.42 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.31 Total: -2.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -7.99 -9.79 -17.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12311540_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.503 kcal (2) G-P(sol) polarization free energy of solvation -7.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds