Wall clock time and date at job start Tue Mar 9 2021 13:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99603 * 2 1 4 4 H 1.08996 * 112.90806 * 18.74800 * 3 2 1 5 5 C 1.53784 * 113.61282 * 149.99932 * 3 2 1 6 6 C 1.53776 * 87.08158 * 89.11048 * 5 3 2 7 7 H 1.08996 * 113.61742 * 270.79755 * 6 5 3 8 8 N 1.46506 * 113.61435 * 139.97955 * 6 5 3 9 9 C 1.39138 * 119.99929 * 154.72273 * 8 6 5 10 10 N 1.32339 * 119.72222 * 359.73186 * 9 8 6 11 11 C 1.32009 * 121.65074 * 179.70910 * 10 9 8 12 12 C 1.37986 * 120.89733 * 0.56504 * 11 10 9 13 13 C 1.50697 * 120.32942 * 179.74799 * 12 11 10 14 14 O 1.42894 * 109.47377 * 119.97610 * 13 12 11 15 15 Si 1.86299 * 109.46747 * 359.97438 * 13 12 11 16 16 C 1.38914 * 119.34921 * 359.72368 * 12 11 10 17 17 C 1.38442 * 118.48038 * 359.97438 * 16 12 11 18 18 F 1.35108 * 120.46969 * 180.02562 * 17 16 12 19 19 C 1.53776 * 113.61078 * 247.49132 * 3 2 1 20 20 H 1.09003 * 109.47211 * 60.00302 * 1 2 3 21 21 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47534 * 300.00031 * 1 2 3 23 23 H 1.09008 * 113.61124 * 334.56080 * 5 3 2 24 24 H 1.08999 * 113.61131 * 203.66276 * 5 3 2 25 25 H 0.97005 * 119.99811 * 335.00301 * 8 6 5 26 26 H 1.07991 * 119.55525 * 180.29103 * 11 10 9 27 27 H 1.08997 * 109.47087 * 239.97954 * 13 12 11 28 28 H 0.96702 * 114.00170 * 299.99949 * 14 13 12 29 29 H 1.48503 * 109.99938 * 58.68388 * 15 13 12 30 30 H 1.48500 * 109.99833 * 180.02562 * 15 13 12 31 31 H 1.07991 * 120.75884 * 179.97438 * 16 12 11 32 32 H 1.09009 * 113.61629 * 156.33754 * 19 3 2 33 33 H 1.09007 * 113.61606 * 25.43415 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3141 2.0798 0.3227 5 6 3.3755 1.3720 0.7046 6 6 4.0061 1.0331 -0.6564 7 1 4.1098 -0.0371 -0.8352 8 7 5.2364 1.7782 -0.9350 9 6 6.1845 1.2541 -1.8081 10 7 5.9718 0.0796 -2.3797 11 6 6.8427 -0.4506 -3.2181 12 6 8.0206 0.2007 -3.5221 13 6 9.0084 -0.4190 -4.4766 14 8 9.2015 0.4510 -5.5937 15 14 8.3522 -2.0578 -5.0720 16 6 8.2867 1.4336 -2.9399 17 6 7.3523 1.9680 -2.0694 18 9 7.5699 3.1647 -1.4810 19 6 2.7534 1.6488 -1.3017 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 3.5169 0.5959 1.4568 24 1 3.6310 2.3672 1.0685 25 1 5.3917 2.6351 -0.5077 26 1 6.6326 -1.4092 -3.6689 27 1 9.9595 -0.5721 -3.9666 28 1 8.3949 0.6319 -6.0954 29 1 7.0404 -1.8668 -5.7412 30 1 9.3176 -2.6796 -6.0137 31 1 9.2015 1.9630 -3.1613 32 1 2.8389 2.7198 -1.4863 33 1 2.3927 1.0962 -2.1693 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12343578_17656566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:31 Heat of formation + Delta-G solvation = -40.353059 kcal Electronic energy + Delta-G solvation = -18752.674752 eV Core-core repulsion = 15503.153973 eV Total energy + Delta-G solvation = -3249.520779 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.96695 -41.51792 -40.53532 -38.23016 -37.34047 -35.02976 -33.20925 -31.23280 -27.70611 -26.87418 -26.57297 -25.66260 -24.06285 -22.89816 -20.89415 -19.28630 -18.77544 -18.39678 -17.74417 -17.34557 -17.04335 -16.73963 -16.18898 -16.10375 -15.99116 -15.58897 -15.47679 -14.97208 -14.58822 -14.32653 -14.00439 -13.57556 -13.45072 -13.38729 -13.10622 -12.65448 -12.37199 -12.16670 -12.07395 -11.44816 -11.16029 -10.76611 -10.66020 -10.54258 -10.51571 -8.77636 -4.89483 -0.09847 0.09097 1.31188 1.62703 1.98390 1.99578 2.51533 2.68707 3.00734 3.27302 3.42389 3.50596 3.59092 3.60596 3.83792 3.85059 3.98094 4.10610 4.32201 4.43860 4.51375 4.54765 4.55040 4.66786 4.72381 4.80409 4.84928 4.96181 4.99839 5.02349 5.04196 5.42876 5.95963 6.19646 6.25600 6.49279 6.95873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.064 3.936 4 H 0.097 0.903 5 C -0.142 4.142 6 C 0.140 3.860 7 H 0.105 0.895 8 N -0.703 5.703 9 C 0.381 3.619 10 N -0.530 5.530 11 C 0.147 3.853 12 C -0.203 4.203 13 C -0.066 4.066 14 O -0.548 6.548 15 Si 0.762 3.238 16 C -0.039 4.039 17 C -0.037 4.037 18 F -0.140 7.140 19 C -0.169 4.169 20 H 0.048 0.952 21 H 0.093 0.907 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.417 0.583 26 H 0.182 0.818 27 H 0.131 0.869 28 H 0.386 0.614 29 H -0.279 1.279 30 H -0.298 1.298 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -0.333 2.137 3.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.005 3.995 4 H 0.115 0.885 5 C -0.180 4.180 6 C 0.035 3.965 7 H 0.123 0.877 8 N -0.335 5.335 9 C 0.142 3.858 10 N -0.247 5.247 11 C -0.010 4.010 12 C -0.209 4.209 13 C -0.176 4.176 14 O -0.356 6.356 15 Si 0.667 3.333 16 C -0.066 4.066 17 C -0.063 4.063 18 F -0.119 7.119 19 C -0.208 4.208 20 H 0.066 0.934 21 H 0.112 0.888 22 H 0.072 0.928 23 H 0.098 0.902 24 H 0.134 0.866 25 H 0.256 0.744 26 H 0.198 0.802 27 H 0.148 0.852 28 H 0.236 0.764 29 H -0.206 1.206 30 H -0.226 1.226 31 H 0.174 0.826 32 H 0.119 0.881 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.075 -1.480 1.939 3.925 hybrid contribution 0.412 2.207 -0.739 2.364 sum -2.663 0.727 1.200 3.010 Atomic orbital electron populations 1.22976 0.79425 1.03781 1.00873 1.87865 1.21394 1.27249 1.94657 1.22933 0.94683 0.85556 0.96321 0.88529 1.23651 0.93775 1.04049 0.96532 1.22454 0.81188 0.97034 0.95789 0.87698 1.44690 1.18496 1.23770 1.46585 1.18641 0.87179 0.89591 0.90374 1.67351 1.33559 1.10423 1.13352 1.22693 0.88133 0.98771 0.91444 1.20915 0.98698 0.96950 1.04300 1.25017 1.02916 1.02367 0.87251 1.86580 1.38648 1.67607 1.42769 0.94157 0.76154 0.77096 0.85877 1.21437 0.98410 0.94975 0.91735 1.18125 0.97963 0.85773 1.04470 1.91468 1.94927 1.42640 1.82843 1.24002 0.96510 1.02067 0.98249 0.93356 0.88829 0.92777 0.90201 0.86646 0.74445 0.80208 0.85155 0.76428 1.20563 1.22615 0.82620 0.88133 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.39 -1.23 10.63 -148.98 -1.58 -2.81 16 3 C 0.06 -0.07 4.37 31.12 0.14 0.07 16 4 H 0.10 -0.43 7.87 -2.39 -0.02 -0.45 16 5 C -0.14 0.31 7.66 31.12 0.24 0.55 16 6 C 0.14 0.18 4.21 45.51 0.19 0.37 16 7 H 0.11 0.58 7.40 -2.39 -0.02 0.57 16 8 N -0.70 -1.06 5.51 -321.79 -1.77 -2.84 16 9 C 0.38 1.82 7.49 133.09 1.00 2.82 16 10 N -0.53 -2.71 9.12 -193.04 -1.76 -4.47 16 11 C 0.15 0.12 9.84 84.61 0.83 0.95 16 12 C -0.20 0.02 5.40 -19.76 -0.11 -0.09 16 13 C -0.07 0.14 2.84 71.24 0.20 0.34 16 14 O -0.55 -0.58 12.78 -148.98 -1.90 -2.48 16 15 Si 0.76 -2.58 29.82 68.60 2.05 -0.53 16 16 C -0.04 -0.08 9.75 22.48 0.22 0.14 16 17 C -0.04 -0.16 7.35 22.59 0.17 0.00 16 18 F -0.14 -0.75 16.65 44.97 0.75 0.00 16 19 C -0.17 0.01 7.71 31.12 0.24 0.25 16 20 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 21 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 22 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 24 H 0.12 -0.71 8.12 -2.39 -0.02 -0.73 16 25 H 0.42 -0.62 8.20 -92.70 -0.76 -1.38 16 26 H 0.18 -0.72 4.88 -2.92 -0.01 -0.74 16 27 H 0.13 -0.55 7.96 -2.39 -0.02 -0.57 16 28 H 0.39 -1.63 8.70 -74.06 -0.64 -2.28 16 29 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 30 H -0.30 -1.28 7.11 99.48 0.71 -0.58 16 31 H 0.16 0.01 8.06 -2.92 -0.02 -0.01 16 32 H 0.10 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 Total: 0.00 -12.93 286.21 -0.10 -13.03 By element: Atomic # 1 Polarization: -6.27 SS G_CDS: -0.22 Total: -6.49 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 4.35 Total: 6.59 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -3.53 Total: -7.30 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: -3.49 Total: -5.30 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.75 Total: 0.00 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: 2.05 Total: -0.53 kcal Total: -12.93 -0.10 -13.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12343578_17656566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.321 kcal (2) G-P(sol) polarization free energy of solvation -12.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds