Wall clock time and date at job start Tue Mar 9 2021 13:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42910 * 113.99860 * 2 1 4 4 H 1.08988 * 112.84600 * 18.80466 * 3 2 1 5 5 C 1.53779 * 113.61380 * 150.00151 * 3 2 1 6 6 C 1.53777 * 87.08114 * 140.06354 * 5 3 2 7 7 H 1.09008 * 113.61206 * 89.20098 * 6 5 3 8 8 C 1.53002 * 113.61263 * 220.01369 * 6 5 3 9 9 N 1.46500 * 109.46819 * 185.00104 * 8 6 5 10 10 C 1.38611 * 119.99873 * 180.02562 * 9 8 6 11 11 N 1.29694 * 124.94912 * 179.97438 * 10 9 8 12 12 C 1.32115 * 116.86520 * 179.73887 * 11 10 9 13 13 C 1.50698 * 122.70695 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.47213 * 149.97450 * 13 12 11 15 15 Si 1.86298 * 109.47538 * 29.97168 * 13 12 11 16 16 C 1.33320 * 114.58266 * 359.97438 * 12 11 10 17 17 C 1.50700 * 125.95570 * 180.02562 * 16 12 11 18 18 S 1.70961 * 124.95138 * 359.70151 * 10 9 8 19 19 C 1.53772 * 87.08311 * 334.56704 * 6 5 3 20 20 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47626 * 299.99561 * 1 2 3 22 22 H 1.08998 * 109.47439 * 59.99998 * 1 2 3 23 23 H 1.09006 * 113.61788 * 25.51225 * 5 3 2 24 24 H 1.09005 * 113.69072 * 254.62389 * 5 3 2 25 25 H 1.08997 * 109.46824 * 65.00872 * 8 6 5 26 26 H 1.08995 * 109.47549 * 305.00173 * 8 6 5 27 27 H 0.97004 * 120.00499 * 0.02562 * 9 8 6 28 28 H 1.08999 * 109.47526 * 269.97052 * 13 12 11 29 29 H 0.96702 * 113.99461 * 299.99863 * 14 13 12 30 30 H 1.48497 * 110.00424 * 179.97438 * 15 13 12 31 31 H 1.48502 * 109.99923 * 301.32075 * 15 13 12 32 32 H 1.08997 * 109.47819 * 89.99580 * 17 16 12 33 33 H 1.09000 * 109.47118 * 209.99881 * 17 16 12 34 34 H 1.09003 * 109.46558 * 329.99712 * 17 16 12 35 35 H 1.08992 * 113.61692 * 139.98046 * 19 6 5 36 36 H 1.09006 * 113.61464 * 270.88629 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3136 2.0788 0.3238 5 6 3.3754 1.3720 0.7045 6 6 3.8219 2.3200 -0.4210 7 1 3.6220 3.3709 -0.2117 8 6 5.2536 2.0714 -0.8998 9 7 5.6246 3.0937 -1.8815 10 6 6.8839 3.0740 -2.4603 11 7 7.3119 3.9284 -3.3372 12 6 8.5453 3.7618 -3.7805 13 6 9.1751 4.6769 -4.7988 14 8 10.5869 4.7296 -4.5832 15 14 8.4563 6.3869 -4.6259 16 6 9.1880 2.7195 -3.2534 17 6 10.5981 2.2952 -3.5739 18 16 8.1015 1.9239 -2.1176 19 6 2.7531 1.6512 -1.3013 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 3.9094 0.4217 0.7125 24 1 3.3394 1.8455 1.6856 25 1 5.3167 1.0856 -1.3604 26 1 5.9345 2.1197 -0.0501 27 1 4.9890 3.7843 -2.1264 28 1 8.9746 4.2981 -5.8010 29 1 10.8393 5.0582 -3.7095 30 1 9.0698 7.2991 -5.6243 31 1 6.9843 6.3407 -4.8164 32 1 11.2906 2.7926 -2.8949 33 1 10.6879 1.2151 -3.4573 34 1 10.8357 2.5708 -4.6014 35 1 2.2132 2.3504 -1.9398 36 1 3.1168 0.7772 -1.8418 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12345244_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:41 Heat of formation + Delta-G solvation = -1.505605 kcal Electronic energy + Delta-G solvation = -18408.584918 eV Core-core repulsion = 15408.279675 eV Total energy + Delta-G solvation = -3000.305243 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04646 -40.69657 -38.21035 -37.47121 -36.01336 -32.75490 -29.94545 -28.48550 -27.41390 -26.82789 -25.51708 -24.14347 -23.51391 -21.13268 -20.25656 -19.09126 -18.00475 -17.75199 -17.25223 -16.73998 -16.61542 -16.28616 -16.18392 -15.68251 -15.53712 -15.08769 -14.56306 -14.10112 -13.87787 -13.74958 -13.66964 -13.58525 -13.27339 -13.06148 -12.75162 -12.58741 -12.24512 -12.05803 -11.88469 -11.81477 -11.60939 -11.02336 -10.53777 -10.50246 -10.25749 -9.92004 -8.57741 -4.81759 0.09227 0.23892 0.85497 1.43048 1.87494 1.94503 1.99508 2.28795 2.72872 3.26751 3.36380 3.45722 3.58714 3.60992 3.65338 3.88995 4.06720 4.23290 4.29739 4.36516 4.38732 4.40339 4.47823 4.59033 4.62733 4.65017 4.70746 4.82030 4.82626 4.95698 4.96404 5.11174 5.17601 5.36137 5.59900 6.17077 6.29098 6.54436 7.02149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.126 4.126 6 C -0.121 4.121 7 H 0.103 0.897 8 C 0.134 3.866 9 N -0.693 5.693 10 C 0.319 3.681 11 N -0.547 5.547 12 C 0.067 3.933 13 C -0.034 4.034 14 O -0.536 6.536 15 Si 0.716 3.284 16 C -0.239 4.239 17 C -0.065 4.065 18 S 0.099 5.901 19 C -0.151 4.151 20 H 0.087 0.913 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.412 0.588 28 H 0.120 0.880 29 H 0.379 0.621 30 H -0.262 1.262 31 H -0.253 1.253 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.602 -0.053 4.450 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.003 3.997 4 H 0.107 0.893 5 C -0.164 4.164 6 C -0.140 4.140 7 H 0.122 0.878 8 C 0.010 3.990 9 N -0.334 5.334 10 C -0.052 4.052 11 N -0.274 5.274 12 C -0.063 4.063 13 C -0.147 4.147 14 O -0.341 6.341 15 Si 0.617 3.383 16 C -0.362 4.362 17 C -0.124 4.124 18 S 0.348 5.652 19 C -0.189 4.189 20 H 0.105 0.895 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.250 0.750 28 H 0.137 0.863 29 H 0.226 0.774 30 H -0.188 1.188 31 H -0.177 1.177 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.289 -0.420 4.093 4.709 hybrid contribution -0.386 0.346 -0.884 1.025 sum -2.675 -0.074 3.209 4.178 Atomic orbital electron populations 1.22820 0.80840 1.03077 1.00043 1.87955 1.19934 1.27072 1.94542 1.23673 0.93917 0.85638 0.96521 0.89272 1.23215 0.95424 1.00042 0.97676 1.22499 0.92920 1.00495 0.98066 0.87838 1.21537 0.95731 0.90783 0.90928 1.43939 1.10549 1.33541 1.45394 1.23274 0.92336 0.94874 0.94761 1.65971 1.15208 1.29543 1.16641 1.20119 0.89166 0.96972 1.00063 1.24511 0.84682 1.07978 0.97512 1.86505 1.19552 1.88698 1.39298 0.94081 0.80353 0.75608 0.88277 1.25110 1.03106 1.01741 1.06278 1.20207 0.88318 1.00374 1.03544 1.83999 1.05652 1.31347 1.44237 1.23633 0.97045 1.01026 0.97202 0.89469 0.93854 0.93944 0.88508 0.90212 0.91070 0.90995 0.74984 0.86306 0.77360 1.18790 1.17682 0.91059 0.92306 0.89065 0.90927 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.42 10.72 -35.23 -0.38 -0.80 16 3 C 0.06 -0.07 4.31 -25.92 -0.11 -0.18 16 4 H 0.09 -0.21 7.87 -51.94 -0.41 -0.62 16 5 C -0.13 0.29 7.47 -25.92 -0.19 0.09 16 6 C -0.12 0.35 3.75 -89.81 -0.34 0.01 16 7 H 0.10 -0.37 8.14 -51.92 -0.42 -0.80 16 8 C 0.13 -0.27 5.37 -4.04 -0.02 -0.29 16 9 N -0.69 0.18 5.71 -62.30 -0.36 -0.17 16 10 C 0.32 0.66 8.24 -87.67 -0.72 -0.06 16 11 N -0.55 -1.95 8.95 -11.37 -0.10 -2.05 16 12 C 0.07 0.18 5.92 -84.19 -0.50 -0.32 16 13 C -0.03 -0.05 2.82 36.00 0.10 0.05 16 14 O -0.54 -0.17 9.90 -35.23 -0.35 -0.51 16 15 Si 0.72 0.92 32.08 -169.99 -5.45 -4.53 16 16 C -0.24 -0.45 6.50 -36.03 -0.23 -0.68 16 17 C -0.07 -0.01 8.95 36.01 0.32 0.31 16 18 S 0.10 0.11 22.32 -107.50 -2.40 -2.29 16 19 C -0.15 0.26 7.47 -25.92 -0.19 0.07 16 20 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 21 H 0.04 -0.08 8.14 -51.93 -0.42 -0.51 16 22 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.10 -0.17 8.10 -51.93 -0.42 -0.59 16 24 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 25 H 0.07 -0.12 7.84 -51.93 -0.41 -0.52 16 26 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 27 H 0.41 -0.36 8.60 -40.82 -0.35 -0.71 16 28 H 0.12 0.23 7.96 -51.93 -0.41 -0.19 16 29 H 0.38 -1.17 8.68 45.56 0.40 -0.77 16 30 H -0.26 -0.96 7.11 56.52 0.40 -0.55 16 31 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.09 0.08 6.62 -51.93 -0.34 -0.27 16 35 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 LS Contribution 312.37 15.07 4.71 4.71 Total: 0.00 -5.72 312.37 -10.48 -16.20 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: -5.36 Total: -10.61 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -0.79 Total: 0.06 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -0.46 Total: -2.23 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -0.73 Total: -1.31 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: -5.45 Total: -4.53 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.40 Total: -2.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -5.72 -10.48 -16.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12345244_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.698 kcal (2) G-P(sol) polarization free energy of solvation -5.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds