Wall clock time and date at job start Tue Mar 9 2021 13:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00636 * 2 1 4 4 H 1.09006 * 112.84431 * 18.79803 * 3 2 1 5 5 C 1.53774 * 113.61987 * 149.99772 * 3 2 1 6 6 C 1.53779 * 87.08287 * 140.06622 * 5 3 2 7 7 H 1.08996 * 113.60947 * 89.20504 * 6 5 3 8 8 C 1.53000 * 113.61261 * 220.01794 * 6 5 3 9 9 N 1.46499 * 109.46840 * 184.99882 * 8 6 5 10 10 C 1.39149 * 119.99974 * 179.97438 * 9 8 6 11 11 N 1.32333 * 119.71510 * 359.73494 * 10 9 8 12 12 C 1.32015 * 121.64372 * 179.70305 * 11 10 9 13 13 C 1.37985 * 120.89956 * 0.57172 * 12 11 10 14 14 C 1.50694 * 120.32429 * 179.74263 * 13 12 11 15 15 O 1.42902 * 109.47160 * 119.97688 * 14 13 12 16 16 Si 1.86293 * 109.47329 * 359.97438 * 14 13 12 17 17 C 1.38903 * 119.34662 * 359.71612 * 13 12 11 18 18 C 1.38444 * 118.48441 * 0.02562 * 17 13 12 19 19 F 1.35105 * 120.46996 * 180.02562 * 18 17 13 20 20 C 1.53775 * 87.07909 * 334.56960 * 6 5 3 21 21 H 1.09001 * 109.47032 * 300.00407 * 1 2 3 22 22 H 1.09003 * 109.46780 * 59.99710 * 1 2 3 23 23 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 24 24 H 1.09006 * 113.61277 * 25.51615 * 5 3 2 25 25 H 1.09001 * 113.69334 * 254.63026 * 5 3 2 26 26 H 1.09002 * 109.47398 * 305.00209 * 8 6 5 27 27 H 1.09001 * 109.47194 * 65.00389 * 8 6 5 28 28 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 29 29 H 1.07997 * 119.55052 * 180.28618 * 12 11 10 30 30 H 1.09006 * 109.46898 * 239.97247 * 14 13 12 31 31 H 0.96700 * 113.99610 * 299.99711 * 15 14 13 32 32 H 1.48497 * 110.00333 * 58.68215 * 16 14 13 33 33 H 1.48506 * 110.00197 * 180.02562 * 16 14 13 34 34 H 1.08002 * 120.75816 * 180.02562 * 17 13 12 35 35 H 1.09005 * 113.61502 * 139.98686 * 20 6 5 36 36 H 1.08999 * 113.61676 * 270.88108 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 3.3756 1.3718 0.7045 6 6 3.8221 2.3198 -0.4210 7 1 3.6223 3.3706 -0.2117 8 6 5.2538 2.0711 -0.8998 9 7 5.6249 3.0932 -1.8815 10 6 6.8894 3.0740 -2.4618 11 7 7.7543 2.1330 -2.1189 12 6 8.9617 2.0753 -2.6495 13 6 9.3724 3.0084 -3.5794 14 6 10.7556 2.9336 -4.1726 15 8 10.6584 2.7789 -5.5899 16 14 11.6635 1.4764 -3.4497 17 6 8.4979 4.0169 -3.9637 18 6 7.2363 4.0493 -3.3945 19 9 6.3536 5.0122 -3.7395 20 6 2.7532 1.6510 -1.3013 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.9095 0.4215 0.7125 25 1 3.3396 1.8453 1.6857 26 1 5.9347 2.1193 -0.0499 27 1 5.3169 1.0852 -1.3603 28 1 4.9893 3.7839 -2.1264 29 1 9.6390 1.2898 -2.3484 30 1 11.2991 3.8504 -3.9437 31 1 10.1857 1.9822 -5.8670 32 1 10.9162 0.2236 -3.7275 33 1 13.0294 1.3920 -4.0262 34 1 8.7954 4.7588 -4.6900 35 1 2.2134 2.3502 -1.9399 36 1 3.1169 0.7770 -1.8417 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12345244_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:44 Heat of formation + Delta-G solvation = -50.247626 kcal Electronic energy + Delta-G solvation = -20134.191726 eV Core-core repulsion = 16728.704267 eV Total energy + Delta-G solvation = -3405.487458 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.84498 -41.41043 -40.62247 -38.32654 -37.55306 -36.04937 -33.22840 -31.85615 -29.04513 -27.52302 -26.81093 -26.16609 -24.87276 -23.14097 -22.79082 -20.83047 -19.31819 -18.49564 -18.33146 -17.79339 -17.46272 -17.00372 -16.72381 -16.19070 -16.16089 -16.10829 -15.90061 -15.44659 -15.39699 -14.86069 -14.29788 -14.12308 -13.99876 -13.62782 -13.49618 -13.34892 -13.01298 -12.68299 -12.54787 -12.05428 -11.99067 -11.81839 -11.58890 -11.19574 -10.77185 -10.61997 -10.51630 -10.47089 -8.73830 -4.99940 -0.04231 0.15003 1.23181 1.55957 1.93603 1.96964 2.58315 2.78974 3.05826 3.27393 3.34574 3.43116 3.51338 3.57440 3.72768 3.74172 3.85794 4.03492 4.04125 4.20746 4.37685 4.42395 4.45900 4.50901 4.64537 4.65957 4.72613 4.73847 4.76425 4.80043 4.92171 4.99096 5.07602 5.23240 5.39324 5.95618 6.17941 6.23207 6.36233 6.98109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.088 0.912 5 C -0.124 4.124 6 C -0.127 4.127 7 H 0.099 0.901 8 C 0.146 3.854 9 N -0.716 5.716 10 C 0.390 3.610 11 N -0.512 5.512 12 C 0.149 3.851 13 C -0.210 4.210 14 C -0.061 4.061 15 O -0.530 6.530 16 Si 0.682 3.318 17 C -0.038 4.038 18 C -0.021 4.021 19 F -0.134 7.134 20 C -0.151 4.151 21 H 0.042 0.958 22 H 0.041 0.959 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.412 0.588 29 H 0.163 0.837 30 H 0.120 0.880 31 H 0.376 0.624 32 H -0.256 1.256 33 H -0.254 1.254 34 H 0.149 0.851 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 0.355 2.814 3.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.106 0.894 5 C -0.163 4.163 6 C -0.145 4.145 7 H 0.117 0.883 8 C 0.022 3.978 9 N -0.349 5.349 10 C 0.152 3.848 11 N -0.229 5.229 12 C -0.008 4.008 13 C -0.215 4.215 14 C -0.172 4.172 15 O -0.337 6.337 16 Si 0.582 3.418 17 C -0.064 4.064 18 C -0.048 4.048 19 F -0.113 7.113 20 C -0.189 4.189 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.249 0.751 29 H 0.180 0.820 30 H 0.138 0.862 31 H 0.224 0.776 32 H -0.181 1.181 33 H -0.179 1.179 34 H 0.167 0.833 35 H 0.088 0.912 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.860 -0.759 3.416 3.604 hybrid contribution -1.086 1.170 -1.830 2.428 sum -1.947 0.410 1.587 2.545 Atomic orbital electron populations 1.22813 0.80947 1.03012 0.99990 1.87956 1.19838 1.27180 1.94552 1.23694 0.93934 0.85510 0.96668 0.89405 1.23191 0.95269 1.00162 0.97631 1.22583 0.93957 1.00053 0.97939 0.88331 1.21300 0.93997 0.91192 0.91303 1.44583 1.11372 1.33311 1.45641 1.18446 0.87595 0.89462 0.89325 1.67324 1.03608 1.23306 1.28706 1.22345 0.91217 0.96097 0.91166 1.20859 0.98772 0.98641 1.03238 1.24824 0.96061 1.12042 0.84246 1.86608 1.79286 1.47817 1.19939 0.95123 0.79617 0.76230 0.90787 1.21271 0.90401 0.97706 0.97014 1.18002 0.90474 0.92334 1.03981 1.91490 1.67312 1.61166 1.91340 1.23622 0.97129 1.00996 0.97125 0.93901 0.93995 0.89515 0.88519 0.90426 0.91031 0.91084 0.75091 0.82016 0.86213 0.77581 1.18080 1.17852 0.83322 0.91160 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.66 10.72 -35.23 -0.38 -1.03 16 3 C 0.06 -0.03 4.31 -25.93 -0.11 -0.14 16 4 H 0.09 -0.15 7.87 -51.93 -0.41 -0.56 16 5 C -0.12 0.16 7.47 -25.92 -0.19 -0.04 16 6 C -0.13 0.24 3.75 -89.81 -0.34 -0.10 16 7 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 8 C 0.15 -0.09 5.53 -4.04 -0.02 -0.11 16 9 N -0.72 -0.12 5.71 -60.34 -0.34 -0.46 16 10 C 0.39 0.71 7.49 -154.86 -1.16 -0.45 16 11 N -0.51 -0.99 9.57 -12.36 -0.12 -1.11 16 12 C 0.15 0.03 9.84 -17.57 -0.17 -0.15 16 13 C -0.21 0.02 5.40 -104.47 -0.56 -0.54 16 14 C -0.06 0.06 2.83 36.00 0.10 0.16 16 15 O -0.53 -0.32 12.78 -35.23 -0.45 -0.77 16 16 Si 0.68 -1.18 29.82 -169.99 -5.07 -6.24 16 17 C -0.04 -0.03 9.75 -39.26 -0.38 -0.41 16 18 C -0.02 -0.04 7.35 -39.10 -0.29 -0.33 16 19 F -0.13 -0.32 16.65 2.25 0.04 -0.28 16 20 C -0.15 0.15 7.46 -25.92 -0.19 -0.05 16 21 H 0.04 -0.06 8.14 -51.93 -0.42 -0.49 16 22 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 23 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.10 -0.06 8.10 -51.93 -0.42 -0.48 16 25 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 26 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 27 H 0.07 0.03 7.84 -51.93 -0.41 -0.38 16 28 H 0.41 -0.38 7.94 -40.82 -0.32 -0.71 16 29 H 0.16 -0.33 4.88 -52.49 -0.26 -0.59 16 30 H 0.12 -0.21 7.96 -51.93 -0.41 -0.63 16 31 H 0.38 -0.79 8.70 45.56 0.40 -0.40 16 32 H -0.26 -0.04 7.11 56.52 0.40 0.36 16 33 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 34 H 0.15 0.00 8.06 -52.49 -0.42 -0.43 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 36 H 0.09 0.02 7.90 -51.93 -0.41 -0.39 16 LS Contribution 307.73 15.07 4.64 4.64 Total: 0.00 -5.53 307.73 -8.73 -14.26 By element: Atomic # 1 Polarization: -3.11 SS G_CDS: -4.82 Total: -7.93 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.23 Total: -1.07 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -0.46 Total: -1.57 kcal Atomic # 8 Polarization: -0.97 SS G_CDS: -0.83 Total: -1.80 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.28 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: -5.07 Total: -6.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -5.53 -8.73 -14.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12345244_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.985 kcal (2) G-P(sol) polarization free energy of solvation -5.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds