Wall clock time and date at job start Tue Mar 9 2021 13:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00636 * 2 1 4 4 H 1.09006 * 112.84431 * 18.79803 * 3 2 1 5 5 C 1.53774 * 113.61987 * 149.99772 * 3 2 1 6 6 C 1.53779 * 87.08287 * 140.06622 * 5 3 2 7 7 H 1.08996 * 113.60947 * 89.20504 * 6 5 3 8 8 C 1.53000 * 113.61261 * 220.01794 * 6 5 3 9 9 N 1.46499 * 109.46840 * 184.99882 * 8 6 5 10 10 C 1.39149 * 119.99974 * 179.97438 * 9 8 6 11 11 N 1.32333 * 119.71510 * 359.73494 * 10 9 8 12 12 C 1.32015 * 121.64372 * 179.70305 * 11 10 9 13 13 C 1.37985 * 120.89956 * 0.57172 * 12 11 10 14 14 C 1.50694 * 120.32429 * 179.74263 * 13 12 11 15 15 O 1.42902 * 109.47160 * 119.97688 * 14 13 12 16 16 Si 1.86293 * 109.47329 * 359.97438 * 14 13 12 17 17 C 1.38903 * 119.34662 * 359.71612 * 13 12 11 18 18 C 1.38444 * 118.48441 * 0.02562 * 17 13 12 19 19 F 1.35105 * 120.46996 * 180.02562 * 18 17 13 20 20 C 1.53775 * 87.07909 * 334.56960 * 6 5 3 21 21 H 1.09001 * 109.47032 * 300.00407 * 1 2 3 22 22 H 1.09003 * 109.46780 * 59.99710 * 1 2 3 23 23 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 24 24 H 1.09006 * 113.61277 * 25.51615 * 5 3 2 25 25 H 1.09001 * 113.69334 * 254.63026 * 5 3 2 26 26 H 1.09002 * 109.47398 * 305.00209 * 8 6 5 27 27 H 1.09001 * 109.47194 * 65.00389 * 8 6 5 28 28 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 29 29 H 1.07997 * 119.55052 * 180.28618 * 12 11 10 30 30 H 1.09006 * 109.46898 * 239.97247 * 14 13 12 31 31 H 0.96700 * 113.99610 * 299.99711 * 15 14 13 32 32 H 1.48497 * 110.00333 * 58.68215 * 16 14 13 33 33 H 1.48506 * 110.00197 * 180.02562 * 16 14 13 34 34 H 1.08002 * 120.75816 * 180.02562 * 17 13 12 35 35 H 1.09005 * 113.61502 * 139.98686 * 20 6 5 36 36 H 1.08999 * 113.61676 * 270.88108 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 3.3756 1.3718 0.7045 6 6 3.8221 2.3198 -0.4210 7 1 3.6223 3.3706 -0.2117 8 6 5.2538 2.0711 -0.8998 9 7 5.6249 3.0932 -1.8815 10 6 6.8894 3.0740 -2.4618 11 7 7.7543 2.1330 -2.1189 12 6 8.9617 2.0753 -2.6495 13 6 9.3724 3.0084 -3.5794 14 6 10.7556 2.9336 -4.1726 15 8 10.6584 2.7789 -5.5899 16 14 11.6635 1.4764 -3.4497 17 6 8.4979 4.0169 -3.9637 18 6 7.2363 4.0493 -3.3945 19 9 6.3536 5.0122 -3.7395 20 6 2.7532 1.6510 -1.3013 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.9095 0.4215 0.7125 25 1 3.3396 1.8453 1.6857 26 1 5.9347 2.1193 -0.0499 27 1 5.3169 1.0852 -1.3603 28 1 4.9893 3.7839 -2.1264 29 1 9.6390 1.2898 -2.3484 30 1 11.2991 3.8504 -3.9437 31 1 10.1857 1.9822 -5.8670 32 1 10.9162 0.2236 -3.7275 33 1 13.0294 1.3920 -4.0262 34 1 8.7954 4.7588 -4.6900 35 1 2.2134 2.3502 -1.9399 36 1 3.1169 0.7770 -1.8417 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12345244_17656566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:43 Heat of formation + Delta-G solvation = -47.537720 kcal Electronic energy + Delta-G solvation = -20134.074215 eV Core-core repulsion = 16728.704267 eV Total energy + Delta-G solvation = -3405.369948 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.96356 -41.44150 -40.56631 -38.32515 -37.54623 -36.04697 -33.27580 -31.87636 -29.01305 -27.47412 -26.73249 -26.14833 -24.89644 -23.13071 -22.80085 -20.75752 -19.33894 -18.51227 -18.37818 -17.78985 -17.47615 -17.08212 -16.65633 -16.16207 -16.14258 -16.08780 -15.89739 -15.49704 -15.40200 -14.85791 -14.31920 -14.13908 -14.05114 -13.59138 -13.43862 -13.35621 -12.94062 -12.66583 -12.46050 -12.09450 -11.93320 -11.74640 -11.52971 -11.17339 -10.78932 -10.66752 -10.53731 -10.43616 -8.76981 -4.88915 -0.09115 0.10217 1.31983 1.63596 1.97113 1.99655 2.53431 2.86004 3.01316 3.27760 3.42190 3.50538 3.59148 3.60168 3.81374 3.83278 3.85582 4.02493 4.12410 4.31314 4.44759 4.47520 4.52424 4.54785 4.70390 4.72836 4.74781 4.81044 4.83045 4.85825 4.97631 5.00479 5.15208 5.29994 5.40000 5.94676 6.17568 6.29415 6.49682 6.95572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.053 3.947 4 H 0.102 0.898 5 C -0.124 4.124 6 C -0.113 4.113 7 H 0.113 0.887 8 C 0.151 3.849 9 N -0.713 5.713 10 C 0.380 3.620 11 N -0.529 5.529 12 C 0.147 3.853 13 C -0.204 4.204 14 C -0.067 4.067 15 O -0.549 6.549 16 Si 0.765 3.235 17 C -0.040 4.040 18 C -0.038 4.038 19 F -0.141 7.141 20 C -0.151 4.151 21 H 0.052 0.948 22 H 0.047 0.953 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.416 0.584 29 H 0.183 0.817 30 H 0.130 0.870 31 H 0.386 0.614 32 H -0.278 1.278 33 H -0.300 1.300 34 H 0.155 0.845 35 H 0.076 0.924 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 0.738 3.261 3.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.004 4.004 4 H 0.120 0.880 5 C -0.162 4.162 6 C -0.131 4.131 7 H 0.131 0.869 8 C 0.028 3.972 9 N -0.346 5.346 10 C 0.141 3.859 11 N -0.247 5.247 12 C -0.010 4.010 13 C -0.209 4.209 14 C -0.176 4.176 15 O -0.357 6.357 16 Si 0.670 3.330 17 C -0.066 4.066 18 C -0.064 4.064 19 F -0.120 7.120 20 C -0.188 4.188 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.254 0.746 29 H 0.199 0.801 30 H 0.148 0.852 31 H 0.236 0.764 32 H -0.205 1.205 33 H -0.228 1.228 34 H 0.173 0.827 35 H 0.095 0.905 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.911 -0.362 3.870 3.992 hybrid contribution -1.046 1.019 -2.008 2.483 sum -1.956 0.658 1.863 2.780 Atomic orbital electron populations 1.22930 0.80019 1.03541 1.00709 1.87919 1.21074 1.28550 1.94723 1.23879 0.94393 0.85160 0.96978 0.88024 1.23180 0.94813 0.99922 0.98285 1.22505 0.92768 1.00627 0.97224 0.86893 1.21236 0.94692 0.90450 0.90865 1.44630 1.11044 1.33453 1.45501 1.18609 0.88129 0.89580 0.89577 1.67367 1.04287 1.23625 1.29389 1.22700 0.91014 0.96416 0.90821 1.20908 0.98939 0.98166 1.02936 1.25036 0.95680 1.13259 0.83668 1.86582 1.79579 1.48756 1.20750 0.94162 0.75530 0.73964 0.89387 1.21431 0.90215 0.98034 0.96932 1.18127 0.90889 0.92642 1.04740 1.91465 1.67591 1.61433 1.91476 1.23575 0.97477 1.00634 0.97149 0.92964 0.93452 0.89199 0.89523 0.89396 0.91313 0.92334 0.74574 0.80086 0.85210 0.76433 1.20485 1.22788 0.82721 0.90530 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.60 10.72 -148.98 -1.60 -3.20 16 3 C 0.05 -0.05 4.31 31.12 0.13 0.08 16 4 H 0.10 -0.41 7.87 -2.38 -0.02 -0.43 16 5 C -0.12 0.31 7.47 31.12 0.23 0.54 16 6 C -0.11 0.44 3.75 -10.27 -0.04 0.40 16 7 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 8 C 0.15 -0.12 5.53 86.38 0.48 0.35 16 9 N -0.71 -0.51 5.71 -344.81 -1.97 -2.48 16 10 C 0.38 1.56 7.49 133.08 1.00 2.55 16 11 N -0.53 -2.15 9.57 -193.03 -1.85 -3.99 16 12 C 0.15 0.01 9.84 84.61 0.83 0.84 16 13 C -0.20 0.11 5.40 -19.77 -0.11 0.00 16 14 C -0.07 0.17 2.83 71.23 0.20 0.37 16 15 O -0.55 -0.50 12.78 -148.98 -1.90 -2.41 16 16 Si 0.76 -2.95 29.82 68.60 2.05 -0.90 16 17 C -0.04 -0.07 9.75 22.48 0.22 0.15 16 18 C -0.04 -0.16 7.35 22.58 0.17 0.01 16 19 F -0.14 -0.75 16.65 44.97 0.75 0.00 16 20 C -0.15 0.25 7.46 31.12 0.23 0.48 16 21 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 22 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 23 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.09 -0.03 8.10 -2.38 -0.02 -0.05 16 25 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.06 0.11 7.84 -2.39 -0.02 0.09 16 28 H 0.42 -0.67 7.94 -92.71 -0.74 -1.41 16 29 H 0.18 -0.90 4.88 -2.91 -0.01 -0.91 16 30 H 0.13 -0.58 7.96 -2.38 -0.02 -0.60 16 31 H 0.39 -1.68 8.70 -74.06 -0.64 -2.33 16 32 H -0.28 0.03 7.11 99.48 0.71 0.74 16 33 H -0.30 -1.22 7.11 99.48 0.71 -0.51 16 34 H 0.16 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H 0.08 0.13 7.90 -2.39 -0.02 0.11 16 Total: 0.00 -13.14 307.73 -0.18 -13.32 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -0.24 Total: -7.32 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 4.58 Total: 6.98 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -3.81 Total: -6.47 kcal Atomic # 8 Polarization: -2.10 SS G_CDS: -3.50 Total: -5.60 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.75 Total: 0.00 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: 2.05 Total: -0.90 kcal Total: -13.14 -0.18 -13.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12345244_17656566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.219 kcal (2) G-P(sol) polarization free energy of solvation -13.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds