Wall clock time and date at job start Tue Mar 9 2021 13:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33325 * 125.94981 * 2 1 4 4 C 1.50698 * 122.71182 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47162 * 29.98943 * 4 3 2 6 6 Si 1.86294 * 109.47440 * 149.99493 * 4 3 2 7 7 N 1.32119 * 114.57773 * 179.75233 * 3 2 1 8 8 C 1.29691 * 116.86803 * 0.48031 * 7 3 2 9 9 N 1.38608 * 124.95129 * 179.81001 * 8 7 3 10 10 C 1.46495 * 119.99877 * 179.72273 * 9 8 7 11 11 H 1.08998 * 112.85167 * 336.19340 * 10 9 8 12 12 C 1.54052 * 113.69874 * 107.46707 * 10 9 8 13 13 C 1.53781 * 86.98687 * 139.98728 * 12 10 9 14 14 H 1.09002 * 113.61445 * 89.16393 * 13 12 10 15 15 C 1.53003 * 113.61337 * 219.98249 * 13 12 10 16 16 O 1.42900 * 109.46913 * 274.13239 * 15 13 12 17 17 C 1.53783 * 113.61332 * 205.00269 * 10 9 8 18 18 S 1.70970 * 110.09742 * 359.54752 * 8 7 3 19 19 H 1.08999 * 109.46694 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46895 * 299.96298 * 1 2 3 21 21 H 1.08997 * 109.47489 * 59.96976 * 1 2 3 22 22 H 1.08998 * 109.46927 * 269.99576 * 4 3 2 23 23 H 0.96705 * 113.99775 * 60.00403 * 5 4 3 24 24 H 1.48500 * 110.00152 * 58.67817 * 6 4 3 25 25 H 1.48500 * 110.00234 * 179.97438 * 6 4 3 26 26 H 0.96995 * 119.99810 * 359.71893 * 9 8 7 27 27 H 1.08999 * 113.60931 * 25.48106 * 12 10 9 28 28 H 1.08998 * 113.69722 * 254.50188 * 12 10 9 29 29 H 1.08997 * 109.46971 * 34.13595 * 15 13 12 30 30 H 1.09004 * 109.46713 * 154.13835 * 15 13 12 31 31 H 0.96698 * 114.00132 * 179.97438 * 16 15 13 32 32 H 1.08992 * 113.61796 * 105.38277 * 17 10 9 33 33 H 1.09005 * 113.68996 * 334.48889 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4814 2.5019 0.6744 6 14 2.9324 3.6147 0.8787 7 7 3.5850 0.8188 0.0052 8 6 3.9315 -0.4309 -0.0001 9 7 5.2385 -0.8926 0.0002 10 6 5.5066 -2.3328 0.0000 11 1 4.6804 -2.9172 0.4050 12 6 6.0366 -2.8637 -1.3455 13 6 6.9921 -3.7484 -0.5275 14 1 6.5720 -4.7199 -0.2667 15 6 8.3967 -3.8497 -1.1255 16 8 8.4257 -4.8954 -2.0990 17 6 6.8745 -2.7048 0.5959 18 16 2.5413 -1.4261 -0.0003 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5132 0.8903 21 1 -0.3634 0.5143 -0.8897 22 1 1.6089 2.8217 -1.0270 23 1 0.5239 2.2118 1.5960 24 1 4.2560 3.5796 0.2064 25 1 2.4034 5.0023 0.8856 26 1 5.9755 -0.2620 0.0006 27 1 6.5457 -2.1076 -1.9432 28 1 5.2985 -3.4285 -1.9150 29 1 8.6586 -2.9040 -1.6001 30 1 9.1134 -4.0699 -0.3343 31 1 9.2874 -5.0165 -2.5207 32 1 6.8125 -3.1413 1.5927 33 1 7.6133 -1.9061 0.5289 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12366698_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:53 Heat of formation + Delta-G solvation = -7.523250 kcal Electronic energy + Delta-G solvation = -16935.426964 eV Core-core repulsion = 14090.398395 eV Total energy + Delta-G solvation = -2845.028568 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12411 -40.56123 -37.90531 -37.36787 -35.29889 -32.52095 -29.59286 -28.46334 -26.93826 -25.57923 -24.49649 -23.23118 -21.30657 -20.20968 -19.07467 -18.35081 -17.83733 -17.44240 -16.76910 -16.53441 -16.40631 -15.69887 -15.53937 -15.16465 -14.73616 -14.16697 -14.10991 -13.73161 -13.67666 -13.45082 -13.40014 -12.99542 -12.64394 -12.39532 -12.20833 -11.92384 -11.79350 -11.65283 -10.99209 -10.91943 -10.52836 -10.29947 -9.93208 -8.57992 -4.82656 0.06757 0.22552 0.82705 1.41935 1.87211 1.94028 1.97732 2.27872 2.99382 3.22231 3.39251 3.44367 3.54008 3.59226 3.77369 4.14594 4.21479 4.26247 4.37675 4.41531 4.44577 4.54536 4.55743 4.58993 4.84207 4.84567 4.87650 4.93388 5.07817 5.18941 5.34496 5.64355 6.28347 6.52663 6.57742 7.00449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.239 4.239 3 C 0.065 3.935 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.717 3.283 7 N -0.545 5.545 8 C 0.319 3.681 9 N -0.683 5.683 10 C 0.127 3.873 11 H 0.109 0.891 12 C -0.146 4.146 13 C -0.108 4.108 14 H 0.104 0.896 15 C 0.086 3.914 16 O -0.573 6.573 17 C -0.134 4.134 18 S 0.099 5.901 19 H 0.057 0.943 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.119 0.881 23 H 0.378 0.622 24 H -0.253 1.253 25 H -0.262 1.262 26 H 0.412 0.588 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.382 0.618 32 H 0.084 0.916 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.498 -2.878 2.750 4.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.361 4.361 3 C -0.065 4.065 4 C -0.146 4.146 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.272 5.272 8 C -0.052 4.052 9 N -0.323 5.323 10 C 0.021 3.979 11 H 0.127 0.873 12 C -0.185 4.185 13 C -0.127 4.127 14 H 0.122 0.878 15 C 0.009 3.991 16 O -0.379 6.379 17 C -0.172 4.172 18 S 0.348 5.652 19 H 0.076 0.924 20 H 0.101 0.899 21 H 0.093 0.907 22 H 0.137 0.863 23 H 0.226 0.774 24 H -0.177 1.177 25 H -0.188 1.188 26 H 0.251 0.749 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.229 0.771 32 H 0.103 0.897 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.453 -2.876 2.300 4.425 hybrid contribution 0.589 0.717 -0.806 1.228 sum 3.042 -2.160 1.494 4.019 Atomic orbital electron populations 1.20149 0.86361 1.01639 1.03715 1.25145 1.01301 0.92705 1.16975 1.20109 0.86783 0.97163 1.02482 1.24520 0.92366 0.95555 1.02189 1.86524 1.28934 1.89553 1.29013 0.94085 0.77571 0.76423 0.90181 1.65977 1.17280 1.16677 1.27256 1.23332 0.91934 0.91484 0.98496 1.43989 1.01750 1.06621 1.79938 1.22707 0.97957 0.79352 0.97879 0.87278 1.23673 0.99220 0.98992 0.96663 1.22336 0.95264 0.98863 0.96264 0.87773 1.22130 0.96209 0.90035 0.90770 1.86484 1.37918 1.55935 1.57537 1.23344 0.96034 0.98770 0.99087 1.83970 0.96556 1.10611 1.74071 0.92373 0.89884 0.90710 0.86339 0.77384 1.17704 1.18772 0.74937 0.89230 0.90354 0.93449 0.93274 0.77104 0.89731 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.01 8.91 36.01 0.32 0.31 16 2 C -0.24 -0.44 6.50 -36.02 -0.23 -0.68 16 3 C 0.06 0.17 5.92 -84.19 -0.50 -0.33 16 4 C -0.03 -0.05 2.94 36.00 0.11 0.06 16 5 O -0.54 -0.18 10.17 -35.23 -0.36 -0.54 16 6 Si 0.72 0.91 32.08 -169.99 -5.45 -4.54 16 7 N -0.55 -1.93 8.94 -11.36 -0.10 -2.04 16 8 C 0.32 0.66 8.24 -87.68 -0.72 -0.06 16 9 N -0.68 0.15 5.52 -54.85 -0.30 -0.15 16 10 C 0.13 -0.23 4.23 -66.98 -0.28 -0.51 16 11 H 0.11 -0.20 7.06 -51.93 -0.37 -0.57 16 12 C -0.15 0.19 7.45 -25.78 -0.19 0.00 16 13 C -0.11 0.21 4.00 -89.80 -0.36 -0.15 16 14 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 15 C 0.09 -0.15 6.87 37.16 0.26 0.10 16 16 O -0.57 0.03 13.66 -35.23 -0.48 -0.45 16 17 C -0.13 0.42 7.39 -25.92 -0.19 0.22 16 18 S 0.10 0.11 21.69 -107.50 -2.33 -2.22 16 19 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 20 H 0.08 -0.09 6.40 -51.93 -0.33 -0.42 16 21 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 22 H 0.12 0.23 7.96 -51.93 -0.41 -0.18 16 23 H 0.38 -1.20 8.13 45.56 0.37 -0.83 16 24 H -0.25 -1.20 7.11 56.52 0.40 -0.80 16 25 H -0.26 -0.95 7.11 56.52 0.40 -0.55 16 26 H 0.41 -0.38 8.85 -40.82 -0.36 -0.74 16 27 H 0.09 -0.09 7.92 -51.93 -0.41 -0.50 16 28 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.05 -0.12 7.88 -51.93 -0.41 -0.52 16 30 H 0.05 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.38 -1.55 9.12 45.56 0.42 -1.13 16 32 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 33 H 0.09 -0.35 8.08 -51.93 -0.42 -0.77 16 LS Contribution 288.97 15.07 4.35 4.35 Total: 0.00 -6.62 288.97 -10.13 -16.75 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -3.66 Total: -10.13 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.80 Total: -1.04 kcal Atomic # 7 Polarization: -1.78 SS G_CDS: -0.40 Total: -2.19 kcal Atomic # 8 Polarization: -0.15 SS G_CDS: -0.84 Total: -0.99 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: -5.45 Total: -4.54 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.33 Total: -2.22 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -6.62 -10.13 -16.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12366698_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.226 kcal (2) G-P(sol) polarization free energy of solvation -6.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds