Wall clock time and date at job start Tue Mar 9 2021 13:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33323 * 125.95217 * 2 1 4 4 C 1.50696 * 122.71144 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47345 * 113.54066 * 4 3 2 6 6 Si 1.86305 * 109.47195 * 233.54070 * 4 3 2 7 7 N 1.32124 * 114.58068 * 180.24583 * 3 2 1 8 8 C 1.29693 * 116.86218 * 359.48999 * 7 3 2 9 9 N 1.38607 * 124.94601 * 180.22085 * 8 7 3 10 10 C 1.46506 * 119.99702 * 180.27760 * 9 8 7 11 11 H 1.08995 * 109.47237 * 35.00364 * 10 9 8 12 12 C 1.52998 * 109.47012 * 155.00353 * 10 9 8 13 13 C 1.52998 * 109.47119 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47279 * 299.99801 * 13 12 10 15 15 H 1.09004 * 109.46966 * 300.00006 * 14 13 12 16 16 N 1.46496 * 109.47416 * 179.97438 * 14 13 12 17 17 C 1.34774 * 120.00236 * 154.99569 * 16 14 13 18 18 O 1.21514 * 119.99891 * 0.02562 * 17 16 14 19 19 O 1.34630 * 120.00250 * 180.02562 * 17 16 14 20 20 C 1.45204 * 117.00373 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47153 * 59.99418 * 20 19 17 22 22 C 1.52999 * 109.47318 * 180.02562 * 20 19 17 23 23 C 1.53000 * 109.46608 * 299.99941 * 20 19 17 24 24 C 1.52998 * 109.46882 * 60.00054 * 14 13 12 25 25 C 1.52998 * 109.46985 * 275.00195 * 10 9 8 26 26 S 1.70960 * 110.10058 * 0.48851 * 8 7 3 27 27 H 1.08996 * 109.46919 * 84.87863 * 1 2 3 28 28 H 1.08999 * 109.46791 * 204.88145 * 1 2 3 29 29 H 1.08997 * 109.46949 * 324.87973 * 1 2 3 30 30 H 1.08998 * 109.47223 * 353.53765 * 4 3 2 31 31 H 0.96703 * 114.00154 * 60.00281 * 5 4 3 32 32 H 1.48491 * 110.00176 * 179.97438 * 6 4 3 33 33 H 1.48500 * 109.99766 * 301.31894 * 6 4 3 34 34 H 0.96996 * 120.00153 * 0.28428 * 9 8 7 35 35 H 1.09004 * 109.47045 * 300.00090 * 12 10 9 36 36 H 1.09004 * 109.47359 * 59.99871 * 12 10 9 37 37 H 1.08995 * 109.47200 * 59.99969 * 13 12 10 38 38 H 1.09006 * 109.47141 * 179.97438 * 13 12 10 39 39 H 0.97004 * 119.99944 * 335.00867 * 16 14 13 40 40 H 1.09003 * 109.46885 * 60.00601 * 21 20 19 41 41 H 1.09000 * 109.47218 * 180.02562 * 21 20 19 42 42 H 1.08993 * 109.47403 * 300.00430 * 21 20 19 43 43 H 1.09001 * 109.47393 * 59.99437 * 22 20 19 44 44 H 1.09003 * 109.46983 * 179.97438 * 22 20 19 45 45 H 1.09003 * 109.47012 * 299.99577 * 22 20 19 46 46 H 1.09003 * 109.47204 * 60.00000 * 23 20 19 47 47 H 1.09003 * 109.47190 * 179.97438 * 23 20 19 48 48 H 1.09006 * 109.47446 * 299.99837 * 23 20 19 49 49 H 1.08995 * 109.47110 * 60.00130 * 24 14 13 50 50 H 1.09003 * 109.47375 * 180.02562 * 24 14 13 51 51 H 1.09004 * 109.47096 * 299.99950 * 25 10 9 52 52 H 1.09001 * 109.47556 * 60.00467 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7415 2.4829 -0.0006 5 8 2.0689 3.1228 1.2345 6 14 2.4883 3.4408 -1.4133 7 7 3.5851 0.8188 -0.0052 8 6 3.9315 -0.4310 0.0008 9 7 5.2384 -0.8927 0.0012 10 6 5.5065 -2.3330 0.0021 11 1 4.7455 -2.8446 -0.5871 12 6 6.8852 -2.5955 -0.6071 13 6 7.1649 -4.0997 -0.6068 14 6 7.1342 -4.6238 0.8303 15 1 7.8954 -4.1126 1.4198 16 7 7.4015 -6.0642 0.8306 17 6 7.9169 -6.6538 1.9275 18 8 8.1596 -5.9906 2.9164 19 8 8.1630 -7.9774 1.9276 20 6 8.7177 -8.5448 3.1436 21 6 7.7508 -8.3062 4.3051 22 6 8.9282 -10.0484 2.9551 23 6 10.0595 -7.8771 3.4518 24 6 5.7556 -4.3613 1.4395 25 6 5.4760 -2.8565 1.4394 26 16 2.5413 -1.4261 0.0005 27 1 -0.3633 0.0917 -1.0235 28 1 -0.3633 -0.9323 0.4324 29 1 -0.3633 0.8406 0.5912 30 1 0.6582 2.4498 -0.1166 31 1 3.0187 3.1876 1.4042 32 1 1.9552 4.8267 -1.4252 33 1 3.9674 3.4662 -1.2839 34 1 5.9755 -0.2621 0.0010 35 1 6.9069 -2.2225 -1.6311 36 1 7.6463 -2.0839 -0.0179 37 1 6.4039 -4.6109 -1.1963 38 1 8.1470 -4.2868 -1.0413 39 1 7.2076 -6.5936 0.0412 40 1 6.7949 -8.7818 4.0855 41 1 8.1674 -8.7317 5.2180 42 1 7.6012 -7.2350 4.4392 43 1 9.6173 -10.2180 2.1277 44 1 9.3451 -10.4742 3.8678 45 1 7.9725 -10.5243 2.7353 46 1 9.9099 -6.8058 3.5860 47 1 10.4758 -8.3027 4.3649 48 1 10.7484 -8.0470 2.6244 49 1 4.9945 -4.8725 0.8501 50 1 5.7338 -4.7343 2.4635 51 1 6.2371 -2.3449 2.0287 52 1 4.4938 -2.6695 1.8735 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12463210_15704122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:31 Heat of formation + Delta-G solvation = -74.372855 kcal Electronic energy + Delta-G solvation = -31860.029793 eV Core-core repulsion = 27566.542451 eV Total energy + Delta-G solvation = -4293.487342 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.176 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.91167 -41.09828 -40.26070 -38.40539 -37.67317 -36.53866 -35.27790 -34.31145 -32.85981 -31.93691 -29.77031 -28.53353 -28.39085 -28.31734 -25.73070 -24.76240 -24.25274 -23.56321 -22.52580 -21.57580 -21.05079 -20.30666 -19.16202 -19.11984 -18.07980 -17.80441 -17.42736 -17.18984 -17.00246 -16.49441 -16.30177 -15.86327 -15.68096 -15.51420 -15.49071 -15.14696 -15.10593 -14.54424 -14.26133 -14.21880 -14.04549 -13.89987 -13.70295 -13.51720 -13.36908 -13.34217 -13.18815 -13.05713 -12.93971 -12.88433 -12.76228 -12.64649 -12.50211 -12.31038 -12.28779 -12.21753 -11.84733 -11.68372 -11.58750 -11.40233 -11.13217 -11.04520 -10.68956 -10.48480 -10.20587 -10.02297 -8.63190 -4.97147 -0.01684 0.17447 0.74897 1.14254 1.25344 1.67705 1.74916 1.77935 1.91766 2.07576 3.11266 3.30856 3.49894 3.54877 3.62264 3.72444 3.77537 3.87085 3.92531 3.99698 4.03222 4.07115 4.21661 4.24233 4.28489 4.38695 4.47558 4.50914 4.55985 4.58801 4.68209 4.72006 4.74344 4.80077 4.82169 4.84637 4.85790 4.93701 4.99691 5.01659 5.06434 5.06729 5.07843 5.17935 5.22165 5.24732 5.28788 5.30753 5.41044 5.58897 5.66350 6.31293 6.33859 6.40039 6.92253 7.34446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.251 4.251 3 C 0.057 3.943 4 C -0.044 4.044 5 O -0.543 6.543 6 Si 0.777 3.223 7 N -0.576 5.576 8 C 0.308 3.692 9 N -0.686 5.686 10 C 0.154 3.846 11 H 0.091 0.909 12 C -0.114 4.114 13 C -0.114 4.114 14 C 0.162 3.838 15 H 0.075 0.925 16 N -0.696 5.696 17 C 0.643 3.357 18 O -0.594 6.594 19 O -0.370 6.370 20 C 0.128 3.872 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.180 4.180 24 C -0.121 4.121 25 C -0.127 4.127 26 S 0.126 5.874 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.383 0.617 32 H -0.290 1.290 33 H -0.297 1.297 34 H 0.413 0.587 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.418 0.582 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.051 0.949 51 H 0.065 0.935 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -6.296 -5.438 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.374 4.374 3 C -0.073 4.073 4 C -0.156 4.156 5 O -0.350 6.350 6 Si 0.682 3.318 7 N -0.304 5.304 8 C -0.063 4.063 9 N -0.326 5.326 10 C 0.049 3.951 11 H 0.109 0.891 12 C -0.153 4.153 13 C -0.152 4.152 14 C 0.059 3.941 15 H 0.093 0.907 16 N -0.355 5.355 17 C 0.396 3.604 18 O -0.485 6.485 19 O -0.284 6.284 20 C 0.092 3.908 21 C -0.237 4.237 22 C -0.195 4.195 23 C -0.237 4.237 24 C -0.161 4.161 25 C -0.167 4.167 26 S 0.375 5.625 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.232 0.768 32 H -0.217 1.217 33 H -0.224 1.224 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.255 0.745 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.169 -6.216 -5.112 8.050 hybrid contribution 0.838 1.164 1.302 1.937 sum 0.669 -5.052 -3.810 6.363 Atomic orbital electron populations 1.20310 0.85274 1.03590 1.04144 1.25474 1.02328 0.93214 1.16388 1.20057 0.86901 0.97496 1.02862 1.24848 1.05697 0.89845 0.95184 1.86534 1.30159 1.80109 1.38190 0.93894 0.77286 0.77351 0.83299 1.66057 1.18024 1.17846 1.28446 1.23529 0.92865 0.91543 0.98367 1.44157 1.01164 1.07599 1.79642 1.21288 0.99534 0.77995 0.96280 0.89082 1.21674 0.94462 0.96316 1.02834 1.21722 1.04743 0.94952 0.93829 1.21054 0.96905 0.77590 0.98532 0.90702 1.44789 1.66278 1.09779 1.14699 1.18392 0.76994 0.81083 0.83906 1.90913 1.58160 1.65130 1.34255 1.86308 1.77368 1.21882 1.42853 1.22324 0.93019 0.94447 0.81024 1.22466 0.99375 1.03544 0.98309 1.21890 1.03455 0.89904 1.04235 1.22474 0.95712 1.02418 1.03106 1.21845 0.97236 0.95580 1.01392 1.21949 1.02353 0.95456 0.96981 1.83776 0.95612 1.09496 1.73655 0.88703 0.90809 0.90098 0.84251 0.76785 1.21676 1.22394 0.74829 0.88821 0.90406 0.88748 0.89170 0.74494 0.91940 0.89626 0.91824 0.91121 0.88442 0.91150 0.91803 0.89625 0.91888 0.89834 0.92994 0.91606 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.21 9.71 71.24 0.69 0.90 16 2 C -0.25 -0.64 6.57 24.57 0.16 -0.48 16 3 C 0.06 0.30 5.20 41.40 0.22 0.51 16 4 C -0.04 -0.16 2.84 71.23 0.20 0.04 16 5 O -0.54 -4.13 12.88 -148.98 -1.92 -6.05 16 6 Si 0.78 2.42 32.61 68.60 2.24 4.66 16 7 N -0.58 -4.10 9.76 -189.87 -1.85 -5.95 16 8 C 0.31 1.04 8.22 179.32 1.47 2.52 16 9 N -0.69 1.03 5.23 -330.41 -1.73 -0.70 16 10 C 0.15 -0.86 2.40 44.99 0.11 -0.75 16 11 H 0.09 -0.59 7.26 -2.39 -0.02 -0.61 16 12 C -0.11 1.02 5.39 30.59 0.16 1.18 16 13 C -0.11 1.10 5.39 30.59 0.16 1.26 16 14 C 0.16 -0.62 2.45 44.99 0.11 -0.51 16 15 H 0.07 0.06 7.58 -2.39 -0.02 0.04 16 16 N -0.70 1.43 5.08 -570.15 -2.90 -1.47 16 17 C 0.64 3.32 8.02 129.79 1.04 4.36 16 18 O -0.59 -6.43 11.54 19.80 0.23 -6.20 16 19 O -0.37 -1.60 9.94 -55.40 -0.55 -2.15 16 20 C 0.13 0.30 1.13 -10.79 -0.01 0.29 16 21 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 22 C -0.14 0.36 8.85 71.98 0.64 1.00 16 23 C -0.18 -0.50 8.37 71.98 0.60 0.11 16 24 C -0.12 0.35 5.50 30.61 0.17 0.52 16 25 C -0.13 0.37 5.51 30.61 0.17 0.54 16 26 S 0.13 0.10 21.69 -56.49 -1.23 -1.13 16 27 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.08 -0.24 7.17 -2.39 -0.02 -0.25 16 30 H 0.14 -0.09 6.33 -2.39 -0.02 -0.10 16 31 H 0.38 1.87 8.70 -74.05 -0.64 1.22 16 32 H -0.29 -2.37 7.11 99.48 0.71 -1.66 16 33 H -0.30 -3.13 7.11 99.48 0.71 -2.42 16 34 H 0.41 -0.94 8.73 -92.71 -0.81 -1.75 16 35 H 0.09 -0.95 8.14 -2.38 -0.02 -0.97 16 36 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H 0.09 -1.17 8.14 -2.39 -0.02 -1.19 16 38 H 0.09 -0.93 8.14 -2.38 -0.02 -0.94 16 39 H 0.42 -2.93 8.71 -92.71 -0.81 -3.73 16 40 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 43 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 47 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 49 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 50 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 52 H 0.06 -0.03 8.04 -2.39 -0.02 -0.05 16 Total: 0.00 -19.24 421.42 -2.48 -21.72 By element: Atomic # 1 Polarization: -13.02 SS G_CDS: -1.27 Total: -14.29 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.50 Total: 11.56 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -6.48 Total: -8.12 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -2.24 Total: -14.41 kcal Atomic # 14 Polarization: 2.42 SS G_CDS: 2.24 Total: 4.66 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.23 Total: -1.13 kcal Total: -19.24 -2.48 -21.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12463210_15704122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.653 kcal (2) G-P(sol) polarization free energy of solvation -19.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds