Wall clock time and date at job start Tue Mar 9 2021 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47249 * 2 1 4 4 C 1.53003 * 109.46888 * 239.99681 * 2 1 3 5 5 O 1.45205 * 109.47274 * 119.99989 * 2 1 3 6 6 C 1.34636 * 116.99948 * 59.99895 * 5 2 1 7 7 O 1.21512 * 119.99876 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00141 * 180.02562 * 6 5 2 9 9 C 1.46496 * 120.00354 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47021 * 324.99874 * 9 8 6 11 11 C 1.53002 * 109.47313 * 84.99862 * 9 8 6 12 12 C 1.53001 * 109.46963 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46886 * 299.99499 * 12 11 9 14 14 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 15 15 N 1.46499 * 109.46840 * 180.02562 * 13 12 11 16 16 C 1.39149 * 119.99734 * 85.00479 * 15 13 12 17 17 N 1.32329 * 119.72069 * 359.72054 * 16 15 13 18 18 C 1.32008 * 121.64992 * 179.75344 * 17 16 15 19 19 C 1.37986 * 120.89674 * 0.52665 * 18 17 16 20 20 C 1.50702 * 120.32409 * 179.71684 * 19 18 17 21 21 O 1.42898 * 109.46888 * 120.02558 * 20 19 18 22 22 Si 1.86300 * 109.47254 * 0.02855 * 20 19 18 23 23 C 1.38899 * 119.34775 * 359.74527 * 19 18 17 24 24 C 1.38447 * 118.48752 * 359.97438 * 23 19 18 25 25 F 1.35095 * 120.47477 * 179.97438 * 24 23 19 26 26 C 1.53002 * 109.47233 * 60.00670 * 13 12 11 27 27 C 1.52997 * 109.47194 * 204.99986 * 9 8 6 28 28 H 1.09002 * 109.47074 * 299.99635 * 1 2 3 29 29 H 1.08997 * 109.47667 * 59.99805 * 1 2 3 30 30 H 1.09004 * 109.47335 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47135 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46636 * 300.00191 * 3 2 1 33 33 H 1.09000 * 109.47246 * 59.99955 * 3 2 1 34 34 H 1.08993 * 109.47320 * 299.99765 * 4 2 1 35 35 H 1.09000 * 109.46608 * 60.00596 * 4 2 1 36 36 H 1.09004 * 109.46524 * 179.97438 * 4 2 1 37 37 H 0.97007 * 119.99952 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.46497 * 300.00287 * 11 9 8 39 39 H 1.09002 * 109.47067 * 60.00040 * 11 9 8 40 40 H 1.09001 * 109.46652 * 179.97438 * 12 11 9 41 41 H 1.08992 * 109.47514 * 59.99933 * 12 11 9 42 42 H 0.97002 * 120.00410 * 264.99761 * 15 13 12 43 43 H 1.08000 * 119.55357 * 180.27279 * 18 17 16 44 44 H 1.09003 * 109.47313 * 240.02542 * 20 19 18 45 45 H 0.96699 * 114.00015 * 300.00288 * 21 20 19 46 46 H 1.48498 * 110.00142 * 179.97438 * 22 20 19 47 47 H 1.48503 * 109.99708 * 301.31399 * 22 20 19 48 48 H 1.08000 * 120.75623 * 180.02562 * 23 19 18 49 49 H 1.09002 * 109.47075 * 59.99068 * 26 13 12 50 50 H 1.08996 * 109.47407 * 180.02562 * 26 13 12 51 51 H 1.09001 * 109.47375 * 59.99949 * 27 9 8 52 52 H 1.09002 * 109.47497 * 299.99590 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0672 -2.6654 2.4172 9 6 1.6741 -4.0668 2.5832 10 1 0.6653 -4.2095 2.1957 11 6 2.6469 -4.9639 1.8152 12 6 2.2359 -6.4275 1.9881 13 6 2.2681 -6.7942 3.4731 14 1 3.2768 -6.6518 3.8608 15 7 1.8751 -8.1957 3.6386 16 6 2.8241 -9.2047 3.5059 17 7 4.0789 -8.8922 3.2246 18 6 5.0109 -9.8181 3.0950 19 6 4.7054 -11.1560 3.2388 20 6 5.7783 -12.2026 3.0818 21 8 5.8980 -12.9477 4.2953 22 14 7.4025 -11.3743 2.6990 23 6 3.3992 -11.5287 3.5290 24 6 2.4439 -10.5358 3.6650 25 9 1.1613 -10.8530 3.9465 26 6 1.2952 -5.8972 4.2412 27 6 1.7066 -4.4332 4.0683 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 2.6269 -2.2365 3.0834 38 1 2.6237 -4.7028 0.7572 39 1 3.6557 -4.8212 2.2026 40 1 2.9287 -7.0665 1.4406 41 1 1.2272 -6.5699 1.6004 42 1 0.9534 -8.4204 3.8408 43 1 6.0255 -9.5247 2.8694 44 1 5.5127 -12.8758 2.2668 45 1 6.1330 -12.4112 5.0647 46 1 8.4691 -12.3957 2.5425 47 1 7.2822 -10.5705 1.4562 48 1 3.1349 -12.5692 3.6467 49 1 0.2865 -6.0395 3.8535 50 1 1.3185 -6.1581 5.2992 51 1 1.0135 -3.7941 4.6154 52 1 2.7154 -4.2906 4.4557 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12463210_17656566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:35 Heat of formation + Delta-G solvation = -119.915227 kcal Electronic energy + Delta-G solvation = -33891.839161 eV Core-core repulsion = 29193.308350 eV Total energy + Delta-G solvation = -4698.530811 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.194 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.95061 -41.91115 -41.45615 -40.11873 -38.39957 -37.78345 -36.44779 -35.26733 -34.24899 -33.19324 -31.86918 -31.59542 -29.20177 -28.39009 -28.31633 -26.40884 -25.19015 -24.00001 -23.81616 -22.89325 -22.22961 -21.43886 -20.84095 -19.44152 -19.00691 -18.47533 -18.31764 -17.79407 -17.55704 -17.18549 -16.99874 -16.85718 -16.26104 -16.06888 -15.94917 -15.70112 -15.49608 -15.38745 -15.33117 -15.07016 -14.58932 -14.49883 -14.35402 -14.26337 -13.92419 -13.73950 -13.43652 -13.36243 -13.27730 -13.17046 -12.93542 -12.88268 -12.73727 -12.69372 -12.52300 -12.39029 -12.27838 -12.16983 -12.12337 -11.74817 -11.49037 -11.39828 -11.15569 -11.08894 -10.70381 -10.65798 -10.40250 -10.18528 -8.75442 -4.97305 -0.07701 0.11466 1.15027 1.32340 1.66311 1.75355 1.98077 2.00318 2.55433 3.02953 3.12832 3.29119 3.50196 3.60794 3.64632 3.67174 3.72757 3.77881 3.86653 3.92734 3.97267 3.98793 4.11699 4.14451 4.33036 4.37537 4.43474 4.45412 4.47991 4.52893 4.58971 4.64907 4.70951 4.73984 4.74456 4.77979 4.82944 4.85902 4.94668 4.99284 5.06354 5.08474 5.10736 5.12039 5.20001 5.24896 5.26953 5.31092 5.40212 5.46725 5.59491 5.99716 6.20637 6.40878 6.79851 6.96901 7.34926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.696 5.696 9 C 0.164 3.836 10 H 0.074 0.926 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.161 3.839 14 H 0.093 0.907 15 N -0.711 5.711 16 C 0.385 3.615 17 N -0.522 5.522 18 C 0.147 3.853 19 C -0.207 4.207 20 C -0.059 4.059 21 O -0.556 6.556 22 Si 0.776 3.224 23 C -0.042 4.042 24 C -0.039 4.039 25 F -0.141 7.141 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.183 0.817 44 H 0.110 0.890 45 H 0.396 0.604 46 H -0.298 1.298 47 H -0.280 1.280 48 H 0.152 0.848 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 4.092 4.401 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.355 5.355 9 C 0.061 3.939 10 H 0.092 0.908 11 C -0.158 4.158 12 C -0.157 4.157 13 C 0.057 3.943 14 H 0.111 0.889 15 N -0.343 5.343 16 C 0.146 3.854 17 N -0.239 5.239 18 C -0.010 4.010 19 C -0.212 4.212 20 C -0.170 4.170 21 O -0.364 6.364 22 Si 0.682 3.318 23 C -0.068 4.068 24 C -0.065 4.065 25 F -0.120 7.120 26 C -0.157 4.157 27 C -0.151 4.151 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.253 0.747 43 H 0.199 0.801 44 H 0.127 0.873 45 H 0.246 0.754 46 H -0.225 1.225 47 H -0.207 1.207 48 H 0.170 0.830 49 H 0.092 0.908 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.052 4.585 2.887 6.218 hybrid contribution -1.372 -1.461 -0.221 2.017 sum 1.680 3.123 2.667 4.437 Atomic orbital electron populations 1.22470 0.94075 1.03657 1.03494 1.22332 0.94426 0.92582 0.81508 1.21890 1.02463 0.90863 1.04247 1.22470 1.01607 1.02210 0.97426 1.86311 1.71533 1.23393 1.47194 1.18385 0.78675 0.80690 0.82610 1.90907 1.42324 1.71068 1.44206 1.44808 1.55241 1.12374 1.23119 1.21042 0.98537 0.77146 0.97197 0.90828 1.21805 1.00040 0.94001 0.99974 1.21796 1.01412 0.95413 0.97114 1.21004 1.00211 0.78627 0.94479 0.88896 1.44724 1.09549 1.04149 1.75852 1.18561 0.89082 0.85859 0.91909 1.67350 0.99173 1.37497 1.19917 1.22693 0.98374 0.87695 0.92249 1.20975 0.95490 0.96055 1.08712 1.24988 1.05079 0.96110 0.90786 1.86475 1.93006 1.38253 1.18659 0.93807 0.73408 0.79940 0.84683 1.21410 0.91580 0.99913 0.93877 1.18155 0.80685 0.93077 1.14584 1.91464 1.35127 1.93388 1.92069 1.21727 0.99087 0.93338 1.01509 1.21706 1.04466 0.96065 0.92850 0.91870 0.89570 0.91835 0.91170 0.88401 0.91093 0.91879 0.89566 0.91978 0.74541 0.93485 0.90221 0.92472 0.92460 0.74710 0.80099 0.87303 0.75391 1.22548 1.20725 0.83034 0.90805 0.89216 0.89388 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 2 C 0.13 0.39 1.13 -10.79 -0.01 0.38 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 5 O -0.37 -1.99 9.94 -55.45 -0.55 -2.54 16 6 C 0.64 4.17 8.02 129.79 1.04 5.22 16 7 O -0.59 -7.20 11.54 19.80 0.23 -6.97 16 8 N -0.70 0.25 5.08 -570.14 -2.90 -2.65 16 9 C 0.16 -0.28 2.45 44.99 0.11 -0.17 16 10 H 0.07 0.20 7.58 -2.39 -0.02 0.18 16 11 C -0.12 0.02 5.49 30.60 0.17 0.18 16 12 C -0.12 0.00 5.51 30.59 0.17 0.17 16 13 C 0.16 -0.48 2.47 44.99 0.11 -0.37 16 14 H 0.09 -0.18 7.54 -2.39 -0.02 -0.20 16 15 N -0.71 0.55 5.23 -324.28 -1.69 -1.15 16 16 C 0.38 1.01 7.47 133.09 0.99 2.01 16 17 N -0.52 -1.12 9.20 -193.03 -1.78 -2.90 16 18 C 0.15 -0.17 9.84 84.61 0.83 0.67 16 19 C -0.21 0.21 5.40 -19.77 -0.11 0.10 16 20 C -0.06 0.15 2.84 71.24 0.20 0.35 16 21 O -0.56 0.94 12.78 -148.98 -1.90 -0.96 16 22 Si 0.78 -3.42 29.82 68.60 2.05 -1.37 16 23 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 24 C -0.04 -0.14 7.35 22.59 0.17 0.03 16 25 F -0.14 -0.72 16.65 44.97 0.75 0.03 16 26 C -0.12 0.80 5.39 30.61 0.17 0.96 16 27 C -0.11 0.83 5.39 30.61 0.17 1.00 16 28 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.56 5.88 -2.38 -0.01 0.54 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 35 H 0.09 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.42 -2.22 8.71 -92.70 -0.81 -3.03 16 38 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.42 -1.04 8.07 -92.71 -0.75 -1.79 16 43 H 0.18 -1.12 4.88 -2.91 -0.01 -1.13 16 44 H 0.11 -0.15 7.96 -2.39 -0.02 -0.17 16 45 H 0.40 -3.86 8.70 -74.06 -0.64 -4.50 16 46 H -0.30 -1.02 7.11 99.48 0.71 -0.32 16 47 H -0.28 -0.02 7.11 99.48 0.71 0.69 16 48 H 0.15 0.04 8.06 -2.91 -0.02 0.02 16 49 H 0.07 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H 0.09 -0.73 8.14 -2.39 -0.02 -0.74 16 51 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 52 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 Total: 0.00 -18.38 413.94 -0.93 -19.31 By element: Atomic # 1 Polarization: -11.13 SS G_CDS: -1.20 Total: -12.32 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 6.07 Total: 11.53 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -6.37 Total: -6.70 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -2.23 Total: -10.47 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.75 Total: 0.03 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.05 Total: -1.37 kcal Total: -18.38 -0.93 -19.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12463210_17656566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.607 kcal (2) G-P(sol) polarization free energy of solvation -18.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds