Wall clock time and date at job start Tue Mar 9 2021 13:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47259 * 2 1 4 4 C 1.50705 * 109.46775 * 240.00269 * 2 1 3 5 5 C 1.37987 * 120.32529 * 120.00052 * 4 2 1 6 6 N 1.32009 * 120.89826 * 179.97438 * 5 4 2 7 7 C 1.32336 * 121.64555 * 359.97438 * 6 5 4 8 8 N 1.39145 * 119.71722 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99738 * 0.02562 * 8 7 6 10 10 H 1.08992 * 109.47276 * 325.00192 * 9 8 7 11 11 C 1.53002 * 109.46958 * 85.00105 * 9 8 7 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47164 * 299.99874 * 12 11 9 14 14 H 1.08998 * 109.46505 * 299.99708 * 13 12 11 15 15 O 1.42895 * 109.47000 * 180.02562 * 13 12 11 16 16 C 1.35696 * 117.00189 * 90.00052 * 15 13 12 17 17 N 1.32223 * 119.69218 * 359.72765 * 16 15 13 18 18 C 1.31977 * 121.65903 * 179.71435 * 17 16 15 19 19 C 1.38037 * 120.86341 * 0.56072 * 18 17 16 20 20 C 1.38837 * 119.29354 * 359.72387 * 19 18 17 21 21 C 1.38459 * 118.47416 * 0.02562 * 20 19 18 22 22 Cl 1.73606 * 120.45042 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47127 * 59.99836 * 13 12 11 24 24 C 1.52996 * 109.46998 * 204.99645 * 9 8 7 25 25 C 1.39344 * 120.56854 * 0.25859 * 7 6 5 26 26 F 1.35092 * 120.47512 * 179.71722 * 25 7 6 27 27 C 1.38446 * 119.05088 * 359.49446 * 25 7 6 28 28 H 0.96697 * 114.00304 * 59.99627 * 1 2 3 29 29 H 1.08995 * 109.47014 * 120.00535 * 2 1 3 30 30 H 1.48502 * 110.00273 * 298.68361 * 3 2 1 31 31 H 1.48504 * 110.00047 * 60.00571 * 3 2 1 32 32 H 1.07992 * 119.54740 * 359.97438 * 5 4 2 33 33 H 0.97001 * 120.00516 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47097 * 299.99818 * 11 9 8 35 35 H 1.09001 * 109.47142 * 59.99782 * 11 9 8 36 36 H 1.09001 * 109.47375 * 59.99908 * 12 11 9 37 37 H 1.09000 * 109.47140 * 179.97438 * 12 11 9 38 38 H 1.08002 * 119.57196 * 180.28446 * 18 17 16 39 39 H 1.07996 * 120.35232 * 179.75258 * 19 18 17 40 40 H 1.08001 * 120.75980 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47153 * 180.02562 * 23 13 12 42 42 H 1.09001 * 109.46832 * 60.00321 * 23 13 12 43 43 H 1.09004 * 109.47368 * 60.00227 * 24 9 8 44 44 H 1.09001 * 109.47372 * 300.00383 * 24 9 8 45 45 H 1.08001 * 120.75319 * 180.23941 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7250 -0.0462 -2.1433 6 7 3.1715 -0.6576 -3.2247 7 6 2.8797 -1.9235 -3.4771 8 7 3.3716 -2.5281 -4.6297 9 6 4.2092 -1.7638 -5.5574 10 1 3.8698 -0.7285 -5.5847 11 6 5.6646 -1.8112 -5.0879 12 6 6.5392 -1.0125 -6.0563 13 6 6.4351 -1.6198 -7.4569 14 1 6.7748 -2.6552 -7.4300 15 8 7.2525 -0.8742 -8.3613 16 6 8.5395 -1.2793 -8.5056 17 7 8.9799 -2.3189 -7.8175 18 6 10.2223 -2.7494 -7.9320 19 6 11.1161 -2.1171 -8.7727 20 6 10.6951 -1.0180 -9.5090 21 6 9.3844 -0.5937 -9.3709 22 17 8.8039 0.7755 -10.2666 23 6 4.9798 -1.5725 -7.9264 24 6 4.1051 -2.3718 -6.9576 25 6 2.0792 -2.6544 -2.6015 26 9 1.7778 -3.9449 -2.8639 27 6 1.6010 -2.0405 -1.4564 28 1 -0.3933 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8899 30 1 1.5879 2.4586 -1.2242 31 1 1.5617 2.4679 1.2086 32 1 2.9843 0.9877 -1.9705 33 1 3.1600 -3.4557 -4.8190 34 1 5.7388 -1.3782 -4.0903 35 1 6.0040 -2.8467 -5.0606 36 1 6.1996 0.0229 -6.0832 37 1 7.5760 -1.0459 -5.7216 38 1 10.5451 -3.6049 -7.3572 39 1 12.1319 -2.4740 -8.8571 40 1 11.3747 -0.5052 -10.1736 41 1 4.9056 -2.0056 -8.9240 42 1 4.6402 -0.5371 -7.9532 43 1 3.0682 -2.3381 -7.2922 44 1 4.4445 -3.4072 -6.9303 45 1 0.9816 -2.5823 -0.7570 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12496378_17656566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:21:53 Heat of formation + Delta-G solvation = -33.881940 kcal Electronic energy + Delta-G solvation = -31840.933719 eV Core-core repulsion = 27186.950426 eV Total energy + Delta-G solvation = -4653.983292 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.95502 -41.87374 -41.45483 -40.14304 -38.65692 -37.85203 -37.59678 -35.65209 -33.40633 -33.27051 -32.10331 -31.92524 -31.18724 -29.32533 -26.46547 -25.38188 -24.73112 -24.35662 -23.79631 -23.06195 -22.46418 -21.14290 -19.63557 -19.28366 -18.55053 -18.36809 -18.19530 -17.63371 -17.35961 -17.04319 -16.84951 -16.59002 -16.16578 -15.98003 -15.91871 -15.72297 -15.48858 -15.21686 -15.06525 -14.55400 -14.39448 -14.33386 -14.30678 -13.99629 -13.89321 -13.46796 -13.37662 -13.31232 -13.11660 -12.98265 -12.76274 -12.59882 -12.25874 -12.19679 -12.09352 -12.07392 -11.70613 -11.33139 -11.10366 -10.80441 -10.75399 -10.71240 -10.62473 -10.53085 -9.46552 -8.77783 -4.89839 -0.10292 -0.08425 0.10718 0.13169 1.05002 1.31249 1.62449 1.77949 1.98802 2.01262 2.53830 2.59776 3.01994 3.22764 3.27417 3.42672 3.56968 3.59667 3.59949 3.72301 3.85247 3.90757 3.95354 3.97161 4.05005 4.08826 4.16569 4.27350 4.34060 4.39699 4.40221 4.44346 4.53256 4.67437 4.74535 4.75888 4.81865 4.90222 4.98328 4.99491 5.02122 5.07016 5.07142 5.17701 5.26187 5.38254 5.44022 5.96322 6.13089 6.19360 6.49555 6.67509 6.96231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.066 4.066 3 Si 0.763 3.237 4 C -0.203 4.203 5 C 0.147 3.853 6 N -0.525 5.525 7 C 0.384 3.616 8 N -0.710 5.710 9 C 0.160 3.840 10 H 0.084 0.916 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.091 3.909 14 H 0.087 0.913 15 O -0.304 6.304 16 C 0.317 3.683 17 N -0.542 5.542 18 C 0.136 3.864 19 C -0.191 4.191 20 C -0.035 4.035 21 C -0.133 4.133 22 Cl -0.055 7.055 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.037 4.037 26 F -0.140 7.140 27 C -0.040 4.040 28 H 0.386 0.614 29 H 0.130 0.870 30 H -0.278 1.278 31 H -0.300 1.300 32 H 0.181 0.819 33 H 0.416 0.584 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -1.685 -0.393 5.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.176 4.176 3 Si 0.667 3.333 4 C -0.209 4.209 5 C -0.010 4.010 6 N -0.242 5.242 7 C 0.146 3.854 8 N -0.342 5.342 9 C 0.055 3.945 10 H 0.102 0.898 11 C -0.151 4.151 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.105 0.895 15 O -0.211 6.211 16 C 0.138 3.862 17 N -0.266 5.266 18 C -0.019 4.019 19 C -0.210 4.210 20 C -0.061 4.061 21 C -0.163 4.163 22 Cl -0.026 7.026 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.063 4.063 26 F -0.120 7.120 27 C -0.066 4.066 28 H 0.236 0.764 29 H 0.147 0.853 30 H -0.204 1.204 31 H -0.228 1.228 32 H 0.198 0.802 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.211 0.789 39 H 0.197 0.803 40 H 0.188 0.812 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.703 -0.749 -0.233 4.768 hybrid contribution -1.362 -0.755 -0.496 1.634 sum 3.342 -1.504 -0.728 3.736 Atomic orbital electron populations 1.86582 1.18513 1.80327 1.50225 1.25016 0.83326 1.11495 0.97746 0.94191 0.90250 0.71897 0.76923 1.20897 1.04598 0.94757 1.00629 1.22681 0.91143 0.99895 0.87303 1.67367 1.27042 1.07463 1.22355 1.18561 0.90049 0.89191 0.87612 1.44677 1.54246 1.14884 1.20375 1.20964 0.89406 0.96453 0.87644 0.89764 1.21749 0.94066 1.00552 0.98758 1.21780 1.00197 1.00237 0.93667 1.22529 0.89863 0.96294 0.87809 0.89495 1.86342 1.17632 1.55098 1.61994 1.19693 0.85961 0.89848 0.90730 1.67496 1.19909 1.13823 1.25407 1.23187 0.86313 0.98029 0.94358 1.22418 1.03533 0.96683 0.98408 1.21816 0.92133 0.95208 0.96895 1.21167 0.95731 0.96610 1.02763 1.98383 1.89048 1.41723 1.73464 1.21514 0.91176 1.02172 0.99687 1.21707 1.00960 1.00180 0.92449 1.18132 1.07766 0.80952 0.99490 1.91465 1.92253 1.34194 1.94042 1.21423 0.96091 0.94702 0.94426 0.76423 0.85270 1.20412 1.22841 0.80226 0.74585 0.91640 0.91442 0.91318 0.92196 0.78908 0.80336 0.81175 0.90198 0.90590 0.89556 0.90048 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.44 12.78 -148.98 -1.90 -2.34 16 2 C -0.07 0.17 2.84 71.24 0.20 0.37 16 3 Si 0.76 -2.89 29.82 68.60 2.05 -0.85 16 4 C -0.20 0.18 5.40 -19.76 -0.11 0.07 16 5 C 0.15 -0.07 9.84 84.61 0.83 0.77 16 6 N -0.53 -1.63 9.20 -193.04 -1.78 -3.41 16 7 C 0.38 1.22 7.47 133.08 0.99 2.21 16 8 N -0.71 0.00 5.23 -324.28 -1.69 -1.69 16 9 C 0.16 -0.17 2.47 44.99 0.11 -0.05 16 10 H 0.08 0.14 7.54 -2.39 -0.02 0.12 16 11 C -0.11 0.01 5.51 30.59 0.17 0.18 16 12 C -0.12 -0.18 5.54 30.60 0.17 -0.01 16 13 C 0.09 0.17 2.38 30.60 0.07 0.24 16 14 H 0.09 0.23 6.99 -2.39 -0.02 0.21 16 15 O -0.30 -1.88 9.24 -90.15 -0.83 -2.72 16 16 C 0.32 1.81 7.45 84.82 0.63 2.44 16 17 N -0.54 -1.86 8.65 -308.86 -2.67 -4.53 16 18 C 0.14 -0.34 11.17 84.62 0.95 0.60 16 19 C -0.19 0.94 10.11 22.37 0.23 1.17 16 20 C -0.03 0.06 9.97 22.47 0.22 0.28 16 21 C -0.13 -0.53 6.36 22.51 0.14 -0.39 16 22 Cl -0.05 -0.28 28.54 -2.72 -0.08 -0.36 16 23 C -0.11 0.13 5.58 30.61 0.17 0.30 16 24 C -0.11 0.43 5.39 30.61 0.17 0.59 16 25 C -0.04 -0.13 7.35 22.59 0.17 0.03 16 26 F -0.14 -0.69 16.65 44.97 0.75 0.06 16 27 C -0.04 -0.05 9.75 22.48 0.22 0.16 16 28 H 0.39 -1.75 8.70 -74.06 -0.64 -2.39 16 29 H 0.13 -0.58 7.96 -2.39 -0.02 -0.59 16 30 H -0.28 0.04 7.11 99.48 0.71 0.74 16 31 H -0.30 -1.26 7.11 99.48 0.71 -0.56 16 32 H 0.18 -0.93 4.88 -2.91 -0.01 -0.94 16 33 H 0.42 -0.92 8.07 -92.71 -0.75 -1.66 16 34 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.07 0.17 8.14 -2.39 -0.02 0.16 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.19 -1.72 8.06 -2.91 -0.02 -1.74 16 39 H 0.18 -2.06 8.06 -2.91 -0.02 -2.08 16 40 H 0.17 -1.07 8.06 -2.91 -0.02 -1.09 16 41 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 44 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 Total: 0.00 -16.33 390.39 -1.12 -17.45 By element: Atomic # 1 Polarization: -10.30 SS G_CDS: -0.30 Total: -10.60 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 5.34 Total: 8.98 kcal Atomic # 7 Polarization: -3.49 SS G_CDS: -6.14 Total: -9.64 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: -2.74 Total: -5.06 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.75 Total: 0.06 kcal Atomic # 14 Polarization: -2.89 SS G_CDS: 2.05 Total: -0.85 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -16.33 -1.12 -17.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12496378_17656566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.428 kcal (2) G-P(sol) polarization free energy of solvation -16.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds