Wall clock time and date at job start Tue Mar 9 2021 13:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46853 * 2 1 4 4 C 1.50699 * 109.47633 * 120.00426 * 2 1 3 5 5 C 1.37984 * 120.32218 * 245.27272 * 4 2 1 6 6 N 1.32009 * 120.89512 * 180.26180 * 5 4 2 7 7 C 1.32336 * 121.65077 * 359.74285 * 6 5 4 8 8 N 1.39140 * 119.72162 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00091 * 359.97432 * 8 7 6 10 10 H 1.08998 * 112.84710 * 336.19939 * 9 8 7 11 11 C 1.53773 * 113.61439 * 107.50649 * 9 8 7 12 12 C 1.53776 * 87.08218 * 89.11874 * 11 9 8 13 13 H 1.09000 * 113.61213 * 270.88047 * 12 11 9 14 14 S 1.81410 * 113.69057 * 139.99414 * 12 11 9 15 15 O 1.42101 * 110.53814 * 194.08646 * 14 12 11 16 16 O 1.42102 * 110.54034 * 330.83413 * 14 12 11 17 17 C 1.76195 * 104.45179 * 82.46328 * 14 12 11 18 18 C 1.38241 * 119.99884 * 269.72842 * 17 14 12 19 19 C 1.38236 * 119.99958 * 179.76473 * 18 17 14 20 20 C 1.38233 * 119.99935 * 0.48587 * 19 18 17 21 21 C 1.38246 * 120.00042 * 359.78808 * 20 19 18 22 22 C 1.38232 * 119.99931 * 359.95508 * 21 20 19 23 23 C 1.53774 * 113.61496 * 205.00426 * 9 8 7 24 24 C 1.39352 * 120.56289 * 359.97261 * 7 6 5 25 25 F 1.35091 * 120.47314 * 180.02562 * 24 7 6 26 26 C 1.38448 * 119.05222 * 0.02562 * 24 7 6 27 27 H 0.96701 * 114.00075 * 299.99554 * 1 2 3 28 28 H 1.09005 * 109.46640 * 240.00784 * 2 1 3 29 29 H 1.48503 * 109.99923 * 300.00325 * 3 2 1 30 30 H 1.48499 * 109.99705 * 61.32214 * 3 2 1 31 31 H 1.07996 * 119.55331 * 0.02562 * 5 4 2 32 32 H 0.97002 * 120.00155 * 179.97438 * 8 7 6 33 33 H 1.09005 * 113.61340 * 203.66473 * 11 9 8 34 34 H 1.08998 * 113.61524 * 334.56539 * 11 9 8 35 35 H 1.07996 * 119.99571 * 359.97438 * 18 17 14 36 36 H 1.07995 * 119.99661 * 180.24840 * 19 18 17 37 37 H 1.08000 * 120.00342 * 179.77055 * 20 19 18 38 38 H 1.08000 * 119.99774 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.00319 * 180.02562 * 22 21 20 40 40 H 1.09003 * 113.61958 * 25.42831 * 23 9 8 41 41 H 1.09003 * 113.61774 * 156.33518 * 23 9 8 42 42 H 1.08002 * 120.75224 * 179.97438 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6334 -0.0189 2.1963 6 7 3.0832 -0.6310 3.2759 7 6 2.8772 -1.9225 3.4786 8 7 3.3690 -2.5268 4.6314 9 6 4.1116 -1.7341 5.6144 10 1 4.5664 -0.8426 5.1825 11 6 3.3250 -1.4620 6.9073 12 6 3.9102 -2.7776 7.4472 13 1 3.3026 -3.6527 7.2170 14 16 4.3962 -2.6970 9.1931 15 8 5.2112 -3.8096 9.5356 16 8 4.7775 -1.3738 9.5439 17 6 2.8976 -2.9669 10.0796 18 6 2.1026 -1.8936 10.4362 19 6 0.9244 -2.1058 11.1274 20 6 0.5462 -3.3902 11.4708 21 6 1.3440 -4.4631 11.1191 22 6 2.5195 -4.2514 10.4232 23 6 5.0800 -2.5660 6.4717 24 6 2.1711 -2.6820 2.5479 25 9 1.9615 -4.0001 2.7568 26 6 1.6875 -2.0666 1.4059 27 1 -0.3933 0.4416 0.7651 28 1 1.7923 -0.5137 -0.8901 29 1 1.5613 2.4679 -1.2085 30 1 1.5878 2.4585 1.2243 31 1 2.8207 1.0366 2.0654 32 1 3.2200 -3.4731 4.7843 33 1 3.6652 -0.5786 7.4477 34 1 2.2435 -1.4874 6.7740 35 1 2.4004 -0.8898 10.1718 36 1 0.3014 -1.2676 11.4025 37 1 -0.3724 -3.5557 12.0141 38 1 1.0487 -5.4666 11.3877 39 1 3.1426 -5.0895 10.1481 40 1 5.4153 -3.4827 5.9867 41 1 5.9000 -1.9844 6.8930 42 1 1.1370 -2.6291 0.6663 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12550012_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:22:43 Heat of formation + Delta-G solvation = -31.548334 kcal Electronic energy + Delta-G solvation = -29861.612474 eV Core-core repulsion = 25430.737611 eV Total energy + Delta-G solvation = -4430.874863 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.093 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -49.96486 -41.63473 -40.41792 -40.14859 -38.17621 -38.06320 -36.95665 -35.51705 -33.28700 -32.41037 -32.10946 -31.34708 -27.46988 -27.18864 -26.32965 -24.85237 -24.20016 -23.81908 -23.09325 -21.14595 -20.04604 -19.72396 -19.05057 -18.65877 -18.34229 -17.84554 -17.66486 -17.10485 -17.04512 -16.98695 -16.60635 -16.27577 -15.99291 -15.76390 -15.66993 -15.55105 -15.30797 -14.93537 -14.61974 -14.46467 -14.39189 -14.12047 -14.04667 -13.94809 -13.79512 -13.43300 -13.30917 -13.09966 -12.99757 -12.75881 -12.40785 -12.34995 -12.21928 -12.06262 -11.81647 -11.49376 -11.20513 -10.84712 -10.73270 -10.61927 -10.45226 -10.13393 -8.92391 -5.05390 -1.01986 -0.24389 -0.16386 0.02221 0.20598 1.16310 1.48858 1.71147 1.78964 1.88083 2.34347 2.44114 2.62829 2.79956 2.94015 2.96942 3.15753 3.27636 3.33079 3.40007 3.47685 3.59677 3.74844 3.76892 3.81423 3.88602 3.91350 4.22966 4.23234 4.26788 4.32756 4.34578 4.37797 4.42338 4.53542 4.58924 4.62692 4.64443 4.76646 4.82763 4.89564 4.97913 5.14428 5.27890 5.29555 5.73525 5.80462 6.03181 6.29567 6.83221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.063 4.063 3 Si 0.684 3.316 4 C -0.204 4.204 5 C 0.146 3.854 6 N -0.509 5.509 7 C 0.391 3.609 8 N -0.700 5.700 9 C 0.149 3.851 10 H 0.122 0.878 11 C -0.126 4.126 12 C -0.603 4.603 13 H 0.153 0.847 14 S 2.500 3.500 15 O -0.934 6.934 16 O -0.930 6.930 17 C -0.659 4.659 18 C -0.023 4.023 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.140 4.140 22 C -0.026 4.026 23 C -0.120 4.120 24 C -0.018 4.018 25 F -0.133 7.133 26 C -0.037 4.037 27 H 0.376 0.624 28 H 0.121 0.879 29 H -0.253 1.253 30 H -0.256 1.256 31 H 0.165 0.835 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 0.705 -1.912 2.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.173 4.173 3 Si 0.585 3.415 4 C -0.209 4.209 5 C -0.011 4.011 6 N -0.225 5.225 7 C 0.153 3.847 8 N -0.333 5.333 9 C 0.042 3.958 10 H 0.140 0.860 11 C -0.166 4.166 12 C -0.713 4.713 13 H 0.171 0.829 14 S 2.681 3.319 15 O -0.931 6.931 16 O -0.927 6.927 17 C -0.745 4.745 18 C -0.042 4.042 19 C -0.159 4.159 20 C -0.083 4.083 21 C -0.159 4.159 22 C -0.045 4.045 23 C -0.159 4.159 24 C -0.044 4.044 25 F -0.112 7.112 26 C -0.063 4.063 27 H 0.224 0.776 28 H 0.138 0.862 29 H -0.178 1.178 30 H -0.180 1.180 31 H 0.182 0.818 32 H 0.251 0.749 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.159 0.841 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.235 1.894 -1.330 2.326 hybrid contribution -2.694 -1.748 0.038 3.211 sum -2.928 0.146 -1.292 3.204 Atomic orbital electron populations 1.86622 1.17660 1.79940 1.49354 1.24848 0.83928 1.10899 0.97641 0.95046 0.91510 0.74178 0.80756 1.20892 1.05535 0.94509 0.99991 1.22434 0.91544 0.99641 0.87449 1.67300 1.24745 1.07096 1.23404 1.18373 0.90543 0.89053 0.86685 1.44160 1.59056 1.11654 1.18441 1.21626 0.91477 0.95249 0.87495 0.86007 1.23295 1.02354 0.93584 0.97342 1.31779 1.09445 1.08541 1.21531 0.82908 1.05393 0.74750 0.74835 0.76916 1.93585 1.64664 1.53224 1.81659 1.93587 1.80530 1.37397 1.81174 1.30530 1.23662 1.00313 1.20041 1.20988 0.92289 0.97988 0.92892 1.21368 0.97215 0.97647 0.99689 1.21576 0.98722 0.92838 0.95167 1.21365 0.95106 0.99798 0.99625 1.20997 0.95160 0.95158 0.93189 1.23114 0.94760 1.02763 0.95288 1.17992 1.08471 0.79479 0.98456 1.91496 1.93710 1.31073 1.94929 1.21309 0.95471 0.94469 0.95095 0.77582 0.86163 1.17815 1.18045 0.81822 0.74893 0.86543 0.89130 0.84052 0.84832 0.85035 0.84833 0.84124 0.88353 0.87121 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.12 12.84 -35.23 -0.45 -0.33 16 2 C -0.06 0.12 2.82 36.01 0.10 0.22 16 3 Si 0.68 -1.76 29.91 -169.99 -5.09 -6.84 16 4 C -0.20 0.26 5.36 -104.47 -0.56 -0.30 16 5 C 0.15 -0.16 9.84 -17.57 -0.17 -0.34 16 6 N -0.51 -0.15 9.13 -12.36 -0.11 -0.26 16 7 C 0.39 0.09 7.49 -154.86 -1.16 -1.07 16 8 N -0.70 1.04 5.41 -53.07 -0.29 0.75 16 9 C 0.15 -0.33 4.35 -67.13 -0.29 -0.62 16 10 H 0.12 -0.23 7.41 -51.93 -0.38 -0.61 16 11 C -0.13 0.33 7.44 -25.93 -0.19 0.14 16 12 C -0.60 1.67 4.19 -25.92 -0.11 1.56 16 13 H 0.15 -0.71 8.14 -51.93 -0.42 -1.13 16 14 S 2.50 1.29 5.13 -107.50 -0.55 0.74 16 15 O -0.93 -3.51 17.13 -57.54 -0.99 -4.50 16 16 O -0.93 -2.79 16.31 -57.54 -0.94 -3.72 16 17 C -0.66 -0.47 5.66 -39.58 -0.22 -0.70 16 18 C -0.02 -0.01 9.47 -39.58 -0.37 -0.38 16 19 C -0.14 0.06 10.05 -39.58 -0.40 -0.34 16 20 C -0.06 0.05 10.05 -39.58 -0.40 -0.35 16 21 C -0.14 0.05 10.05 -39.58 -0.40 -0.35 16 22 C -0.03 -0.01 9.47 -39.58 -0.37 -0.39 16 23 C -0.12 0.36 7.41 -25.93 -0.19 0.17 16 24 C -0.02 -0.01 7.35 -39.09 -0.29 -0.30 16 25 F -0.13 -0.16 16.65 2.25 0.04 -0.12 16 26 C -0.04 0.01 9.82 -39.26 -0.39 -0.37 16 27 H 0.38 -1.13 8.70 45.56 0.40 -0.73 16 28 H 0.12 -0.31 7.96 -51.93 -0.41 -0.73 16 29 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 30 H -0.26 0.23 7.00 56.52 0.40 0.63 16 31 H 0.17 -0.51 4.84 -52.49 -0.25 -0.76 16 32 H 0.41 -1.06 8.17 -40.82 -0.33 -1.39 16 33 H 0.12 -0.34 7.44 -51.93 -0.39 -0.73 16 34 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 35 H 0.14 -0.16 7.56 -52.49 -0.40 -0.55 16 36 H 0.13 -0.33 8.06 -52.49 -0.42 -0.76 16 37 H 0.13 -0.38 8.06 -52.49 -0.42 -0.81 16 38 H 0.13 -0.32 8.06 -52.49 -0.42 -0.74 16 39 H 0.14 -0.11 7.57 -52.49 -0.40 -0.51 16 40 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 41 H 0.11 -0.41 8.10 -51.93 -0.42 -0.83 16 42 H 0.15 -0.17 8.06 -52.49 -0.42 -0.59 16 LS Contribution 371.84 15.07 5.60 5.60 Total: 0.00 -10.74 371.84 -12.94 -23.68 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: -4.75 Total: -11.56 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -5.42 Total: -3.43 kcal Atomic # 7 Polarization: 0.89 SS G_CDS: -0.40 Total: 0.49 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -2.38 Total: -8.56 kcal Atomic # 9 Polarization: -0.16 SS G_CDS: 0.04 Total: -0.12 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: -5.09 Total: -6.84 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -0.55 Total: 0.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -10.74 -12.94 -23.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12550012_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.867 kcal (2) G-P(sol) polarization free energy of solvation -10.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds