Wall clock time and date at job start Tue Mar 9 2021 13:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 C 1.53002 * 109.46955 * 239.99708 * 2 1 3 5 5 O 1.45198 * 109.46991 * 120.00214 * 2 1 3 6 6 C 1.34632 * 117.00370 * 59.99851 * 5 2 1 7 7 O 1.21516 * 119.99810 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00072 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99685 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.85050 * 336.19218 * 9 8 6 11 11 C 1.53778 * 113.69233 * 107.46920 * 9 8 6 12 12 C 1.53778 * 87.08449 * 139.98872 * 11 9 8 13 13 H 1.09000 * 113.61263 * 89.11673 * 12 11 9 14 14 C 1.52997 * 113.61422 * 220.01977 * 12 11 9 15 15 N 1.46499 * 109.47084 * 272.49417 * 14 12 11 16 16 C 1.39145 * 120.00129 * 179.97438 * 15 14 12 17 17 N 1.32337 * 119.72098 * 359.73054 * 16 15 14 18 18 C 1.32004 * 121.65220 * 179.70844 * 17 16 15 19 19 C 1.37992 * 120.89231 * 0.56818 * 18 17 16 20 20 C 1.50700 * 120.32086 * 179.74414 * 19 18 17 21 21 O 1.42906 * 109.47035 * 119.97806 * 20 19 18 22 22 Si 1.86305 * 109.47531 * 359.97438 * 20 19 18 23 23 C 1.38901 * 119.35232 * 359.71929 * 19 18 17 24 24 C 1.38446 * 118.48341 * 0.02562 * 23 19 18 25 25 F 1.35102 * 120.46862 * 180.02562 * 24 23 19 26 26 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 27 27 H 1.09003 * 109.47239 * 300.00084 * 1 2 3 28 28 H 1.09000 * 109.47104 * 60.00152 * 1 2 3 29 29 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47368 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46882 * 299.99984 * 3 2 1 32 32 H 1.09003 * 109.47008 * 59.99774 * 3 2 1 33 33 H 1.08993 * 109.47367 * 300.00367 * 4 2 1 34 34 H 1.09000 * 109.47101 * 60.00137 * 4 2 1 35 35 H 1.09001 * 109.47071 * 179.97438 * 4 2 1 36 36 H 0.96993 * 119.99669 * 0.02562 * 8 6 5 37 37 H 1.08999 * 113.61111 * 254.53935 * 11 9 8 38 38 H 1.08999 * 113.61280 * 25.35318 * 11 9 8 39 39 H 1.09004 * 109.47170 * 32.49387 * 14 12 11 40 40 H 1.08995 * 109.47328 * 152.49879 * 14 12 11 41 41 H 0.97005 * 119.99932 * 0.02562 * 15 14 12 42 42 H 1.07993 * 119.55536 * 180.28787 * 18 17 16 43 43 H 1.08997 * 109.47198 * 239.97542 * 20 19 18 44 44 H 0.96701 * 113.99573 * 180.02562 * 21 20 19 45 45 H 1.48505 * 109.99467 * 298.68061 * 22 20 19 46 46 H 1.48499 * 109.99936 * 59.99489 * 22 20 19 47 47 H 1.08001 * 120.75589 * 180.02562 * 23 19 18 48 48 H 1.09004 * 113.61451 * 270.88641 * 26 12 11 49 49 H 1.08994 * 113.61477 * 139.97943 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0672 2.5826 10 1 0.7604 -4.3168 2.0444 11 6 2.8218 -5.0632 2.3435 12 6 2.2731 -5.8610 3.5382 13 1 1.5223 -6.6010 3.2612 14 6 3.3637 -6.4306 4.4476 15 7 3.7827 -7.7415 3.9455 16 6 4.7713 -8.4585 4.6124 17 7 5.3331 -7.9486 5.6967 18 6 6.2702 -8.5980 6.3620 19 6 6.7089 -9.8366 5.9407 20 6 7.7835 -10.5642 6.7069 21 8 7.2741 -11.8170 7.1686 22 14 8.3124 -9.5332 8.1658 23 6 6.1501 -10.4064 4.8039 24 6 5.1656 -9.7047 4.1294 25 9 4.5944 -10.2214 3.0194 26 6 1.6760 -4.5381 4.0466 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 2.6276 -2.2368 3.0828 37 1 2.7488 -5.5934 1.3939 38 1 3.8111 -4.6397 2.5169 39 1 4.2189 -5.7547 4.4567 40 1 2.9739 -6.5370 5.4598 41 1 3.3715 -8.1094 3.1477 42 1 6.7024 -8.1520 7.2455 43 1 8.6398 -10.7381 6.0554 44 1 7.9133 -12.3401 7.6715 45 1 8.8736 -8.2405 7.6973 46 1 7.1537 -9.2889 9.0618 47 1 6.4762 -11.3749 4.4542 48 1 2.3521 -3.9714 4.6869 49 1 0.6781 -4.6444 4.4718 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12628478_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:19 Heat of formation + Delta-G solvation = -88.247380 kcal Electronic energy + Delta-G solvation = -30891.573681 eV Core-core repulsion = 26349.953710 eV Total energy + Delta-G solvation = -4541.619971 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.85959 -41.82227 -41.39381 -40.49856 -38.20363 -37.82675 -36.56869 -35.25448 -34.16303 -33.27340 -31.86403 -28.87855 -28.32313 -28.28278 -26.93033 -26.24275 -25.26963 -24.08069 -22.76648 -22.37258 -21.41383 -20.65605 -19.32530 -19.00225 -18.60231 -18.27306 -17.98026 -17.69389 -17.06455 -16.94852 -16.83504 -16.59605 -16.21458 -15.73869 -15.58731 -15.48326 -15.32501 -15.14338 -15.00009 -14.46729 -14.42025 -14.34035 -13.94157 -13.82326 -13.66496 -13.56536 -13.42010 -13.30742 -13.04080 -12.83363 -12.82042 -12.57239 -12.48824 -12.36092 -12.18367 -12.08326 -11.85496 -11.70109 -11.28805 -11.23357 -10.95016 -10.77026 -10.68875 -10.34162 -10.14964 -8.75643 -5.05144 -0.08663 0.13303 1.20150 1.21277 1.57995 1.87406 1.89035 1.94784 2.52615 3.04194 3.10979 3.17931 3.27584 3.32124 3.39345 3.61760 3.63223 3.64816 3.78440 3.83826 3.84009 3.97813 4.05652 4.10209 4.26041 4.28180 4.47931 4.50731 4.55945 4.57214 4.60329 4.63299 4.63449 4.66386 4.77551 4.78604 4.85173 4.88195 4.89082 4.93678 4.97293 5.07199 5.11003 5.32527 5.36008 5.36993 5.48928 5.61375 5.91766 6.14795 6.42833 6.55678 6.93516 7.43675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.567 6.567 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.121 0.879 11 C -0.149 4.149 12 C -0.124 4.124 13 H 0.103 0.897 14 C 0.145 3.855 15 N -0.716 5.716 16 C 0.389 3.611 17 N -0.512 5.512 18 C 0.142 3.858 19 C -0.164 4.164 20 C -0.059 4.059 21 O -0.547 6.547 22 Si 0.682 3.318 23 C -0.034 4.034 24 C -0.018 4.018 25 F -0.132 7.132 26 C -0.133 4.133 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.154 0.846 43 H 0.077 0.923 44 H 0.384 0.616 45 H -0.251 1.251 46 H -0.247 1.247 47 H 0.151 0.849 48 H 0.094 0.906 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 0.049 2.891 4.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.404 3.596 7 O -0.456 6.456 8 N -0.360 5.360 9 C 0.037 3.963 10 H 0.139 0.861 11 C -0.188 4.188 12 C -0.143 4.143 13 H 0.121 0.879 14 C 0.022 3.978 15 N -0.349 5.349 16 C 0.150 3.850 17 N -0.229 5.229 18 C -0.015 4.015 19 C -0.169 4.169 20 C -0.170 4.170 21 O -0.353 6.353 22 Si 0.583 3.417 23 C -0.061 4.061 24 C -0.044 4.044 25 F -0.111 7.111 26 C -0.172 4.172 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.242 0.758 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.251 0.749 42 H 0.171 0.829 43 H 0.094 0.906 44 H 0.232 0.768 45 H -0.176 1.176 46 H -0.172 1.172 47 H 0.169 0.831 48 H 0.112 0.888 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.481 1.854 2.860 4.216 hybrid contribution 0.049 -0.927 -1.107 1.445 sum 2.530 0.927 1.753 3.214 Atomic orbital electron populations 1.22522 0.93839 1.05037 1.02711 1.22117 0.94450 0.91564 0.81877 1.21877 1.02323 0.92364 1.03338 1.22519 1.01586 1.03446 0.96554 1.86307 1.71485 1.23500 1.46723 1.18181 0.78610 0.80548 0.82285 1.90914 1.41011 1.70544 1.43098 1.44759 1.55338 1.12163 1.23726 1.22532 0.99156 0.77526 0.97121 0.86118 1.23638 0.99208 0.97068 0.98837 1.22616 0.98244 0.96664 0.96787 0.87878 1.21292 0.96369 0.82941 0.97234 1.44532 1.39727 1.20024 1.30661 1.18410 0.89329 0.87349 0.89868 1.67266 1.12560 1.35437 1.07636 1.22115 0.91377 0.91165 0.96837 1.19936 1.02349 0.96692 0.97970 1.24468 0.96253 0.91507 1.04816 1.86494 1.42794 1.30652 1.75408 0.95107 0.85385 0.80623 0.80627 1.21257 0.92399 0.99505 0.92905 1.17978 1.01685 0.94868 0.89899 1.91495 1.83561 1.86515 1.49513 1.23358 1.02590 0.95335 0.95937 0.92116 0.90931 0.89444 0.91411 0.89930 0.91388 0.89441 0.90934 0.92150 0.75814 0.90483 0.89201 0.91211 0.91149 0.74923 0.82938 0.90559 0.76843 1.17590 1.17154 0.83083 0.88798 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.29 8.37 37.16 0.31 0.02 16 2 C 0.14 0.22 1.13 -90.62 -0.10 0.12 16 3 C -0.14 0.06 8.85 37.16 0.33 0.39 16 4 C -0.18 -0.31 8.37 37.16 0.31 0.00 16 5 O -0.37 -0.99 9.94 -40.30 -0.40 -1.40 16 6 C 0.65 1.97 8.06 54.06 0.44 2.40 16 7 O -0.57 -3.02 11.48 -19.29 -0.22 -3.24 16 8 N -0.70 0.00 5.36 -57.93 -0.31 -0.31 16 9 C 0.14 -0.14 4.24 -67.12 -0.28 -0.43 16 10 H 0.12 0.04 7.46 -51.93 -0.39 -0.34 16 11 C -0.15 0.23 7.43 -25.92 -0.19 0.04 16 12 C -0.12 0.31 3.75 -89.81 -0.34 -0.03 16 13 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 14 C 0.15 -0.12 5.53 -4.04 -0.02 -0.14 16 15 N -0.72 -0.42 5.71 -60.34 -0.34 -0.76 16 16 C 0.39 1.11 7.49 -154.86 -1.16 -0.05 16 17 N -0.51 -1.81 9.57 -12.36 -0.12 -1.93 16 18 C 0.14 0.38 9.84 -17.57 -0.17 0.21 16 19 C -0.16 -0.31 5.43 -104.47 -0.57 -0.88 16 20 C -0.06 0.05 2.83 36.01 0.10 0.15 16 21 O -0.55 0.32 12.76 -35.23 -0.45 -0.13 16 22 Si 0.68 -1.36 29.82 -169.99 -5.07 -6.43 16 23 C -0.03 -0.07 9.75 -39.26 -0.38 -0.46 16 24 C -0.02 -0.05 7.35 -39.09 -0.29 -0.34 16 25 F -0.13 -0.39 16.65 2.25 0.04 -0.35 16 26 C -0.13 0.38 7.39 -25.91 -0.19 0.19 16 27 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 29 H 0.09 0.32 5.88 -51.93 -0.31 0.02 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 31 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 32 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 33 H 0.09 0.33 5.88 -51.93 -0.31 0.03 16 34 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.06 0.09 8.14 -51.93 -0.42 -0.34 16 36 H 0.41 -0.79 8.84 -40.82 -0.36 -1.15 16 37 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 38 H 0.09 -0.11 7.90 -51.93 -0.41 -0.52 16 39 H 0.07 -0.02 7.85 -51.93 -0.41 -0.42 16 40 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.41 -0.23 7.94 -40.82 -0.32 -0.56 16 42 H 0.15 0.23 4.88 -52.49 -0.26 -0.03 16 43 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 44 H 0.38 -2.15 8.74 45.56 0.40 -1.76 16 45 H -0.25 -0.06 7.11 56.52 0.40 0.34 16 46 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 47 H 0.15 0.10 8.06 -52.49 -0.42 -0.33 16 48 H 0.09 -0.33 8.08 -51.93 -0.42 -0.75 16 49 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 LS Contribution 400.33 15.07 6.03 6.03 Total: 0.00 -8.05 400.33 -10.52 -18.56 By element: Atomic # 1 Polarization: -3.79 SS G_CDS: -7.46 Total: -11.26 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.21 Total: 1.20 kcal Atomic # 7 Polarization: -2.23 SS G_CDS: -0.77 Total: -3.00 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -1.07 Total: -4.76 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -1.36 SS G_CDS: -5.07 Total: -6.43 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -8.05 -10.52 -18.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628478_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.684 kcal (2) G-P(sol) polarization free energy of solvation -8.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds