Wall clock time and date at job start Tue Mar 9 2021 13:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47371 * 2 1 4 4 C 1.53002 * 109.46955 * 239.99708 * 2 1 3 5 5 O 1.45198 * 109.46991 * 120.00214 * 2 1 3 6 6 C 1.34632 * 117.00370 * 59.99851 * 5 2 1 7 7 O 1.21516 * 119.99810 * 359.97438 * 6 5 2 8 8 N 1.34781 * 120.00072 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99685 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.85050 * 336.19218 * 9 8 6 11 11 C 1.53778 * 113.69233 * 107.46920 * 9 8 6 12 12 C 1.53778 * 87.08449 * 139.98872 * 11 9 8 13 13 H 1.09000 * 113.61263 * 89.11673 * 12 11 9 14 14 C 1.52997 * 113.61422 * 220.01977 * 12 11 9 15 15 N 1.46499 * 109.47084 * 272.49417 * 14 12 11 16 16 C 1.39145 * 120.00129 * 179.97438 * 15 14 12 17 17 N 1.32337 * 119.72098 * 359.73054 * 16 15 14 18 18 C 1.32004 * 121.65220 * 179.70844 * 17 16 15 19 19 C 1.37992 * 120.89231 * 0.56818 * 18 17 16 20 20 C 1.50700 * 120.32086 * 179.74414 * 19 18 17 21 21 O 1.42906 * 109.47035 * 119.97806 * 20 19 18 22 22 Si 1.86305 * 109.47531 * 359.97438 * 20 19 18 23 23 C 1.38901 * 119.35232 * 359.71929 * 19 18 17 24 24 C 1.38446 * 118.48341 * 0.02562 * 23 19 18 25 25 F 1.35102 * 120.46862 * 180.02562 * 24 23 19 26 26 C 1.53784 * 87.08081 * 334.56700 * 12 11 9 27 27 H 1.09003 * 109.47239 * 300.00084 * 1 2 3 28 28 H 1.09000 * 109.47104 * 60.00152 * 1 2 3 29 29 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47368 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46882 * 299.99984 * 3 2 1 32 32 H 1.09003 * 109.47008 * 59.99774 * 3 2 1 33 33 H 1.08993 * 109.47367 * 300.00367 * 4 2 1 34 34 H 1.09000 * 109.47101 * 60.00137 * 4 2 1 35 35 H 1.09001 * 109.47071 * 179.97438 * 4 2 1 36 36 H 0.96993 * 119.99669 * 0.02562 * 8 6 5 37 37 H 1.08999 * 113.61111 * 254.53935 * 11 9 8 38 38 H 1.08999 * 113.61280 * 25.35318 * 11 9 8 39 39 H 1.09004 * 109.47170 * 32.49387 * 14 12 11 40 40 H 1.08995 * 109.47328 * 152.49879 * 14 12 11 41 41 H 0.97005 * 119.99932 * 0.02562 * 15 14 12 42 42 H 1.07993 * 119.55536 * 180.28787 * 18 17 16 43 43 H 1.08997 * 109.47198 * 239.97542 * 20 19 18 44 44 H 0.96701 * 113.99573 * 180.02562 * 21 20 19 45 45 H 1.48505 * 109.99467 * 298.68061 * 22 20 19 46 46 H 1.48499 * 109.99936 * 59.99489 * 22 20 19 47 47 H 1.08001 * 120.75589 * 180.02562 * 23 19 18 48 48 H 1.09004 * 113.61451 * 270.88641 * 26 12 11 49 49 H 1.08994 * 113.61477 * 139.97943 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6748 -4.0672 2.5826 10 1 0.7604 -4.3168 2.0444 11 6 2.8218 -5.0632 2.3435 12 6 2.2731 -5.8610 3.5382 13 1 1.5223 -6.6010 3.2612 14 6 3.3637 -6.4306 4.4476 15 7 3.7827 -7.7415 3.9455 16 6 4.7713 -8.4585 4.6124 17 7 5.3331 -7.9486 5.6967 18 6 6.2702 -8.5980 6.3620 19 6 6.7089 -9.8366 5.9407 20 6 7.7835 -10.5642 6.7069 21 8 7.2741 -11.8170 7.1686 22 14 8.3124 -9.5332 8.1658 23 6 6.1501 -10.4064 4.8039 24 6 5.1656 -9.7047 4.1294 25 9 4.5944 -10.2214 3.0194 26 6 1.6760 -4.5381 4.0466 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 2.6276 -2.2368 3.0828 37 1 2.7488 -5.5934 1.3939 38 1 3.8111 -4.6397 2.5169 39 1 4.2189 -5.7547 4.4567 40 1 2.9739 -6.5370 5.4598 41 1 3.3715 -8.1094 3.1477 42 1 6.7024 -8.1520 7.2455 43 1 8.6398 -10.7381 6.0554 44 1 7.9133 -12.3401 7.6715 45 1 8.8736 -8.2405 7.6973 46 1 7.1537 -9.2889 9.0618 47 1 6.4762 -11.3749 4.4542 48 1 2.3521 -3.9714 4.6869 49 1 0.6781 -4.6444 4.4718 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12628478_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:18 Heat of formation + Delta-G solvation = -87.630873 kcal Electronic energy + Delta-G solvation = -30891.546947 eV Core-core repulsion = 26349.953710 eV Total energy + Delta-G solvation = -4541.593237 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.179 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.05645 -41.95575 -41.52136 -40.48103 -38.25294 -37.86398 -36.61677 -35.39924 -34.23484 -33.39974 -31.94563 -28.88956 -28.41436 -28.34460 -26.81051 -26.26615 -25.37053 -24.18266 -22.85719 -22.41177 -21.46864 -20.67716 -19.44249 -19.09759 -18.61988 -18.30616 -18.07947 -17.80148 -17.23619 -17.08537 -16.89813 -16.59117 -16.23193 -15.83214 -15.64819 -15.47928 -15.43238 -15.21919 -15.04278 -14.55925 -14.52059 -14.40446 -14.04958 -13.87144 -13.57943 -13.51612 -13.40924 -13.29038 -13.06920 -12.94585 -12.91216 -12.58041 -12.54032 -12.44140 -12.20516 -12.08813 -11.79275 -11.66678 -11.44124 -11.24942 -11.15087 -10.91210 -10.84495 -10.24597 -10.19960 -8.85917 -4.91663 -0.25560 -0.00114 1.13209 1.32081 1.68118 1.68999 1.88053 1.99321 2.38189 2.90228 3.05391 3.12708 3.33282 3.36734 3.47082 3.60201 3.69769 3.70570 3.72090 3.76089 3.77736 3.90013 4.07644 4.13422 4.31096 4.33193 4.40208 4.49517 4.56723 4.59866 4.61038 4.65213 4.68058 4.71909 4.75923 4.78014 4.83198 4.83426 4.88061 4.91434 4.98875 5.05480 5.15059 5.22419 5.24491 5.28397 5.45416 5.55178 5.84666 6.06335 6.35159 6.81682 6.94542 7.29000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.643 3.357 7 O -0.595 6.595 8 N -0.690 5.690 9 C 0.135 3.865 10 H 0.106 0.894 11 C -0.145 4.145 12 C -0.111 4.111 13 H 0.110 0.890 14 C 0.150 3.850 15 N -0.712 5.712 16 C 0.378 3.622 17 N -0.529 5.529 18 C 0.128 3.872 19 C -0.172 4.172 20 C -0.066 4.066 21 O -0.566 6.566 22 Si 0.773 3.227 23 C -0.037 4.037 24 C -0.031 4.031 25 F -0.135 7.135 26 C -0.121 4.121 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.418 0.582 42 H 0.158 0.842 43 H 0.100 0.900 44 H 0.405 0.595 45 H -0.282 1.282 46 H -0.294 1.294 47 H 0.165 0.835 48 H 0.106 0.894 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 0.069 3.332 5.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.396 3.604 7 O -0.486 6.486 8 N -0.349 5.349 9 C 0.031 3.969 10 H 0.124 0.876 11 C -0.184 4.184 12 C -0.131 4.131 13 H 0.128 0.872 14 C 0.026 3.974 15 N -0.346 5.346 16 C 0.139 3.861 17 N -0.247 5.247 18 C -0.029 4.029 19 C -0.177 4.177 20 C -0.176 4.176 21 O -0.376 6.376 22 Si 0.678 3.322 23 C -0.063 4.063 24 C -0.058 4.058 25 F -0.114 7.114 26 C -0.159 4.159 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.256 0.744 42 H 0.174 0.826 43 H 0.118 0.882 44 H 0.257 0.743 45 H -0.209 1.209 46 H -0.221 1.221 47 H 0.182 0.818 48 H 0.124 0.876 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.290 1.848 3.312 5.021 hybrid contribution -0.206 -0.929 -1.229 1.554 sum 3.084 0.919 2.084 3.834 Atomic orbital electron populations 1.22471 0.93984 1.03685 1.03548 1.22359 0.94512 0.92601 0.81497 1.21891 1.02424 0.90861 1.04288 1.22469 1.01569 1.02234 0.97423 1.86313 1.71545 1.23367 1.47276 1.18446 0.78573 0.80706 0.82655 1.90901 1.42358 1.71072 1.44258 1.44791 1.54777 1.12326 1.23018 1.22584 0.98770 0.77075 0.98464 0.87619 1.23595 0.98989 0.96939 0.98850 1.22518 0.97753 0.96846 0.95946 0.87230 1.21290 0.96536 0.82285 0.97267 1.44624 1.39116 1.20259 1.30566 1.18580 0.89815 0.87703 0.89985 1.67254 1.13206 1.36055 1.08150 1.22341 0.91591 0.91828 0.97128 1.20276 1.02803 0.96584 0.98076 1.24624 0.95774 0.91680 1.05517 1.86439 1.44326 1.30829 1.75993 0.94149 0.82316 0.78256 0.77471 1.21486 0.92068 0.99955 0.92837 1.18132 1.02296 0.95231 0.90126 1.91479 1.83696 1.86563 1.49695 1.23322 1.03255 0.94621 0.94726 0.91899 0.89440 0.91812 0.91235 0.88279 0.91133 0.91844 0.89426 0.92042 0.74599 0.91299 0.89206 0.91643 0.91614 0.74402 0.82555 0.88217 0.74313 1.20911 1.22139 0.81755 0.87613 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 8.37 71.98 0.60 -0.08 16 2 C 0.13 0.46 1.13 -10.79 -0.01 0.45 16 3 C -0.14 0.21 8.85 71.98 0.64 0.85 16 4 C -0.18 -0.72 8.37 71.98 0.60 -0.12 16 5 O -0.37 -2.29 9.94 -55.42 -0.55 -2.84 16 6 C 0.64 4.68 8.06 129.79 1.05 5.72 16 7 O -0.59 -7.50 11.48 19.79 0.23 -7.27 16 8 N -0.69 -0.45 5.36 -567.60 -3.04 -3.50 16 9 C 0.13 -0.18 4.24 45.52 0.19 0.01 16 10 H 0.11 0.23 7.46 -2.39 -0.02 0.21 16 11 C -0.14 0.36 7.43 31.12 0.23 0.59 16 12 C -0.11 0.54 3.75 -10.27 -0.04 0.50 16 13 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 14 C 0.15 -0.19 5.53 86.38 0.48 0.28 16 15 N -0.71 -1.31 5.71 -344.82 -1.97 -3.28 16 16 C 0.38 2.49 7.49 133.08 1.00 3.49 16 17 N -0.53 -4.28 9.57 -193.03 -1.85 -6.13 16 18 C 0.13 0.79 9.84 84.61 0.83 1.63 16 19 C -0.17 -0.67 5.43 -19.76 -0.11 -0.78 16 20 C -0.07 0.17 2.83 71.24 0.20 0.37 16 21 O -0.57 1.28 12.76 -148.98 -1.90 -0.62 16 22 Si 0.77 -3.23 29.82 68.60 2.05 -1.18 16 23 C -0.04 -0.17 9.75 22.48 0.22 0.05 16 24 C -0.03 -0.20 7.35 22.59 0.17 -0.04 16 25 F -0.14 -0.89 16.65 44.97 0.75 -0.14 16 26 C -0.12 0.72 7.39 31.12 0.23 0.95 16 27 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 30 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.06 0.60 5.88 -2.39 -0.01 0.58 16 34 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.42 -1.58 8.84 -92.71 -0.82 -2.40 16 37 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.09 -0.19 7.90 -2.39 -0.02 -0.21 16 39 H 0.07 -0.01 7.85 -2.38 -0.02 -0.03 16 40 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.42 -0.19 7.94 -92.70 -0.74 -0.93 16 42 H 0.16 0.65 4.88 -2.91 -0.01 0.63 16 43 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 44 H 0.41 -5.19 8.74 -74.06 -0.65 -5.84 16 45 H -0.28 -0.23 7.11 99.48 0.71 0.48 16 46 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 47 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 48 H 0.11 -0.84 8.08 -2.39 -0.02 -0.86 16 49 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 Total: 0.00 -20.37 400.33 -1.17 -21.54 By element: Atomic # 1 Polarization: -9.29 SS G_CDS: -1.16 Total: -10.45 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 6.28 Total: 13.88 kcal Atomic # 7 Polarization: -6.05 SS G_CDS: -6.86 Total: -12.90 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -2.22 Total: -10.74 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.05 Total: -1.18 kcal Total: -20.37 -1.17 -21.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12628478_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.087 kcal (2) G-P(sol) polarization free energy of solvation -20.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds