Wall clock time and date at job start Tue Mar 9 2021 13:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47865 * 11.84579 * 3 2 1 5 5 C 1.53004 * 109.46977 * 131.84505 * 3 2 1 6 6 C 1.52999 * 109.47357 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46997 * 300.00316 * 6 5 3 8 8 H 1.09006 * 109.47351 * 299.99535 * 7 6 5 9 9 N 1.46507 * 109.47160 * 179.97438 * 7 6 5 10 10 C 1.38405 * 120.00082 * 84.99626 * 9 7 6 11 11 N 1.32501 * 119.21666 * 359.72995 * 10 9 7 12 12 C 1.32274 * 120.74204 * 180.27404 * 11 10 9 13 13 C 1.38612 * 119.19367 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.71732 * 179.97438 * 13 12 11 15 15 O 1.42892 * 109.47123 * 120.02209 * 14 13 12 16 16 Si 1.86302 * 109.47223 * 0.02562 * 14 13 12 17 17 C 1.38599 * 118.55845 * 359.97438 * 13 12 11 18 18 N 1.32271 * 119.20254 * 359.97438 * 17 13 12 19 19 C 1.53001 * 109.47501 * 59.99993 * 7 6 5 20 20 C 1.52999 * 109.46662 * 299.99835 * 19 7 6 21 21 H 4.18739 * 15.03918 * 359.97438 * 4 2 1 22 22 H 1.08999 * 109.47367 * 300.00036 * 5 3 2 23 23 H 1.09006 * 109.47012 * 60.00160 * 5 3 2 24 24 H 1.09001 * 109.47505 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46787 * 59.99797 * 6 5 3 26 26 H 0.96998 * 119.99988 * 265.00000 * 9 7 6 27 27 H 1.07993 * 120.40089 * 180.02562 * 12 11 10 28 28 H 1.09009 * 109.46656 * 240.01972 * 14 13 12 29 29 H 0.96704 * 114.00057 * 179.97438 * 15 14 13 30 30 H 1.48502 * 110.00120 * 298.68532 * 16 14 13 31 31 H 1.48500 * 109.99746 * 60.00479 * 16 14 13 32 32 H 1.08004 * 120.40191 * 180.02562 * 17 13 12 33 33 H 1.08993 * 109.47180 * 59.99748 * 19 7 6 34 34 H 1.08999 * 109.47075 * 180.02562 * 19 7 6 35 35 H 1.09006 * 109.47094 * 180.02562 * 20 19 7 36 36 H 1.09002 * 109.47647 * 299.99422 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0049 -0.2109 5 6 3.1556 0.9632 -1.0746 6 6 4.6856 0.9645 -1.0743 7 6 5.1948 1.4145 0.2965 8 1 4.8307 2.4201 0.5073 9 7 6.6599 1.4151 0.2971 10 6 7.3517 2.5173 -0.1743 11 7 6.6733 3.5613 -0.6275 12 6 7.3037 4.6283 -1.0900 13 6 8.6897 4.6446 -1.0969 14 6 9.4429 5.8420 -1.6165 15 8 10.2647 6.3758 -0.5765 16 14 8.2320 7.1410 -2.1795 17 6 9.3678 3.5357 -0.6155 18 7 8.6765 2.5014 -0.1662 19 6 4.6854 0.4519 1.3711 20 6 3.1554 0.4508 1.3707 21 1 -1.0499 -0.0012 0.0002 22 1 2.7924 0.6429 -2.0511 23 1 2.7918 1.9689 -0.8636 24 1 5.0486 1.6506 -1.8395 25 1 5.0497 -0.0411 -1.2850 26 1 7.1451 0.6430 0.6277 27 1 6.7453 5.4764 -1.4577 28 1 10.0694 5.5407 -2.4561 29 1 10.7799 7.1504 -0.8407 30 1 7.3925 6.6086 -3.2828 31 1 7.3721 7.5600 -1.0437 32 1 10.4476 3.5167 -0.6067 33 1 5.0495 -0.5536 1.1604 34 1 5.0479 0.7728 2.3477 35 1 2.7924 -0.2347 2.1366 36 1 2.7912 1.4563 1.5815 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12865464_12175864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:53 Heat of formation + Delta-G solvation = 74.645401 kcal Electronic energy + Delta-G solvation = -18920.261592 eV Core-core repulsion = 15986.447877 eV Total energy + Delta-G solvation = -2933.813715 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07832 -40.13662 -38.01156 -36.58990 -34.70683 -33.97664 -32.38981 -31.90277 -29.85138 -26.55043 -25.87347 -23.95492 -23.75802 -22.73421 -21.23365 -19.37055 -19.04793 -18.73371 -18.30452 -16.84021 -16.51275 -16.21369 -15.83000 -15.72862 -15.35762 -15.33643 -15.17189 -14.74080 -14.18196 -14.00030 -13.90648 -13.31270 -13.15463 -12.84120 -12.34936 -12.23564 -12.22784 -12.12570 -11.82091 -11.72599 -11.63166 -11.26093 -10.96205 -10.84612 -10.55705 -9.94974 -9.06258 -5.06449 0.07501 0.18889 1.21326 1.57266 1.80454 1.88988 1.92738 1.96137 2.81867 3.10870 3.33599 3.35894 3.57709 3.60874 3.69118 3.73016 3.88876 4.04832 4.11097 4.14109 4.18024 4.35304 4.37179 4.39340 4.46763 4.62941 4.66726 4.79258 4.92264 4.98535 5.04714 5.08746 5.16639 5.22904 5.26445 5.38110 5.80478 6.02894 6.42747 6.58188 6.74142 7.31915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.019 3.981 4 H 0.093 0.907 5 C -0.106 4.106 6 C -0.128 4.128 7 C 0.159 3.841 8 H 0.093 0.907 9 N -0.691 5.691 10 C 0.568 3.432 11 N -0.560 5.560 12 C 0.193 3.807 13 C -0.250 4.250 14 C -0.050 4.050 15 O -0.548 6.548 16 Si 0.680 3.320 17 C 0.227 3.773 18 N -0.568 5.568 19 C -0.127 4.127 20 C -0.105 4.105 21 H 0.217 0.783 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.414 0.586 27 H 0.157 0.843 28 H 0.076 0.924 29 H 0.384 0.616 30 H -0.253 1.253 31 H -0.249 1.249 32 H 0.172 0.828 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 2.021 -1.901 3.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.001 3.999 4 H 0.111 0.889 5 C -0.144 4.144 6 C -0.167 4.167 7 C 0.054 3.946 8 H 0.111 0.889 9 N -0.327 5.327 10 C 0.212 3.788 11 N -0.282 5.282 12 C 0.026 3.974 13 C -0.258 4.258 14 C -0.162 4.162 15 O -0.354 6.354 16 Si 0.581 3.419 17 C 0.059 3.941 18 N -0.290 5.290 19 C -0.165 4.165 20 C -0.143 4.143 21 H 0.234 0.766 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.252 0.748 27 H 0.173 0.827 28 H 0.094 0.906 29 H 0.232 0.768 30 H -0.177 1.177 31 H -0.173 1.173 32 H 0.189 0.811 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.229 0.911 -1.293 1.598 hybrid contribution 0.566 -0.106 -0.137 0.592 sum 0.337 0.805 -1.429 1.675 Atomic orbital electron populations 1.24978 0.96001 1.00763 1.00315 1.22996 0.94222 1.00588 1.00757 1.18374 0.84486 1.00749 0.96247 0.88908 1.21507 0.94742 0.99725 0.98468 1.21955 0.95133 1.02095 0.97529 1.21050 0.77528 1.01030 0.95025 0.88853 1.44274 1.05997 1.15385 1.67033 1.19382 0.85253 0.86803 0.87405 1.67912 1.40459 1.01565 1.18239 1.22578 0.90954 0.94239 0.89665 1.20723 0.95235 0.98794 1.11016 1.24293 1.00323 0.98625 0.92941 1.86484 1.61487 1.49906 1.37553 0.95100 0.80550 0.85313 0.80965 1.22813 1.00472 0.85469 0.85364 1.68004 1.06812 1.30485 1.23653 1.21830 0.95910 0.99861 0.98947 1.21484 0.94104 1.02712 0.96018 0.76608 0.91090 0.91102 0.91014 0.91512 0.74806 0.82663 0.90617 0.76831 1.17729 1.17322 0.81073 0.90858 0.90631 0.90712 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.29 19.25 29.55 0.57 0.28 16 2 C -0.19 -0.35 12.56 -37.12 -0.47 -0.82 16 3 C 0.02 0.00 2.57 -93.41 -0.24 -0.24 16 4 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 5 C -0.11 0.00 5.16 -26.73 -0.14 -0.14 16 6 C -0.13 -0.02 5.51 -26.73 -0.15 -0.17 16 7 C 0.16 0.04 2.44 -67.93 -0.17 -0.12 16 8 H 0.09 0.17 7.51 -51.93 -0.39 -0.22 16 9 N -0.69 -0.96 5.22 -55.79 -0.29 -1.25 16 10 C 0.57 2.22 8.40 -322.80 -2.71 -0.49 16 11 N -0.56 -2.38 9.21 -13.93 -0.13 -2.51 16 12 C 0.19 0.62 9.92 -17.22 -0.17 0.44 16 13 C -0.25 -0.54 5.43 -104.35 -0.57 -1.10 16 14 C -0.05 0.05 2.84 36.01 0.10 0.15 16 15 O -0.55 0.40 12.76 -35.23 -0.45 -0.05 16 16 Si 0.68 -1.22 29.87 -169.99 -5.08 -6.30 16 17 C 0.23 0.59 10.92 -17.23 -0.19 0.40 16 18 N -0.57 -2.32 10.46 -13.93 -0.15 -2.47 16 19 C -0.13 0.17 5.39 -26.73 -0.14 0.03 16 20 C -0.11 0.08 5.16 -26.73 -0.14 -0.05 16 21 H 0.22 -0.33 7.80 -54.10 -0.42 -0.76 16 22 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 23 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 24 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.41 0.01 8.72 -40.82 -0.36 -0.34 16 27 H 0.16 0.29 5.04 -52.49 -0.26 0.02 16 28 H 0.08 -0.21 7.96 -51.92 -0.41 -0.62 16 29 H 0.38 -2.20 8.74 45.56 0.40 -1.81 16 30 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 31 H -0.25 -0.37 7.11 56.52 0.40 0.03 16 32 H 0.17 0.03 8.06 -52.48 -0.42 -0.39 16 33 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 35 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 36 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 304.39 15.07 4.59 4.59 Total: 0.00 -6.89 304.39 -10.78 -17.68 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -4.87 Total: -7.86 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -4.41 Total: -1.84 kcal Atomic # 7 Polarization: -5.66 SS G_CDS: -0.57 Total: -6.23 kcal Atomic # 8 Polarization: 0.40 SS G_CDS: -0.45 Total: -0.05 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -6.89 -10.78 -17.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_12175864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.321 kcal (2) G-P(sol) polarization free energy of solvation -6.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds