Wall clock time and date at job start Tue Mar 9 2021 13:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47865 * 11.84579 * 3 2 1 5 5 C 1.53004 * 109.46977 * 131.84505 * 3 2 1 6 6 C 1.52999 * 109.47357 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46997 * 300.00316 * 6 5 3 8 8 H 1.09006 * 109.47351 * 299.99535 * 7 6 5 9 9 N 1.46507 * 109.47160 * 179.97438 * 7 6 5 10 10 C 1.38405 * 120.00082 * 84.99626 * 9 7 6 11 11 N 1.32501 * 119.21666 * 359.72995 * 10 9 7 12 12 C 1.32274 * 120.74204 * 180.27404 * 11 10 9 13 13 C 1.38612 * 119.19367 * 0.02562 * 12 11 10 14 14 C 1.50703 * 120.71732 * 179.97438 * 13 12 11 15 15 O 1.42892 * 109.47123 * 120.02209 * 14 13 12 16 16 Si 1.86302 * 109.47223 * 0.02562 * 14 13 12 17 17 C 1.38599 * 118.55845 * 359.97438 * 13 12 11 18 18 N 1.32271 * 119.20254 * 359.97438 * 17 13 12 19 19 C 1.53001 * 109.47501 * 59.99993 * 7 6 5 20 20 C 1.52999 * 109.46662 * 299.99835 * 19 7 6 21 21 H 4.18739 * 15.03918 * 359.97438 * 4 2 1 22 22 H 1.08999 * 109.47367 * 300.00036 * 5 3 2 23 23 H 1.09006 * 109.47012 * 60.00160 * 5 3 2 24 24 H 1.09001 * 109.47505 * 180.02562 * 6 5 3 25 25 H 1.09000 * 109.46787 * 59.99797 * 6 5 3 26 26 H 0.96998 * 119.99988 * 265.00000 * 9 7 6 27 27 H 1.07993 * 120.40089 * 180.02562 * 12 11 10 28 28 H 1.09009 * 109.46656 * 240.01972 * 14 13 12 29 29 H 0.96704 * 114.00057 * 179.97438 * 15 14 13 30 30 H 1.48502 * 110.00120 * 298.68532 * 16 14 13 31 31 H 1.48500 * 109.99746 * 60.00479 * 16 14 13 32 32 H 1.08004 * 120.40191 * 180.02562 * 17 13 12 33 33 H 1.08993 * 109.47180 * 59.99748 * 19 7 6 34 34 H 1.08999 * 109.47075 * 180.02562 * 19 7 6 35 35 H 1.09006 * 109.47094 * 180.02562 * 20 19 7 36 36 H 1.09002 * 109.47647 * 299.99422 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0049 -0.2109 5 6 3.1556 0.9632 -1.0746 6 6 4.6856 0.9645 -1.0743 7 6 5.1948 1.4145 0.2965 8 1 4.8307 2.4201 0.5073 9 7 6.6599 1.4151 0.2971 10 6 7.3517 2.5173 -0.1743 11 7 6.6733 3.5613 -0.6275 12 6 7.3037 4.6283 -1.0900 13 6 8.6897 4.6446 -1.0969 14 6 9.4429 5.8420 -1.6165 15 8 10.2647 6.3758 -0.5765 16 14 8.2320 7.1410 -2.1795 17 6 9.3678 3.5357 -0.6155 18 7 8.6765 2.5014 -0.1662 19 6 4.6854 0.4519 1.3711 20 6 3.1554 0.4508 1.3707 21 1 -1.0499 -0.0012 0.0002 22 1 2.7924 0.6429 -2.0511 23 1 2.7918 1.9689 -0.8636 24 1 5.0486 1.6506 -1.8395 25 1 5.0497 -0.0411 -1.2850 26 1 7.1451 0.6430 0.6277 27 1 6.7453 5.4764 -1.4577 28 1 10.0694 5.5407 -2.4561 29 1 10.7799 7.1504 -0.8407 30 1 7.3925 6.6086 -3.2828 31 1 7.3721 7.5600 -1.0437 32 1 10.4476 3.5167 -0.6067 33 1 5.0495 -0.5536 1.1604 34 1 5.0479 0.7728 2.3477 35 1 2.7924 -0.2347 2.1366 36 1 2.7912 1.4563 1.5815 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12865464_12175864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:24:53 Heat of formation + Delta-G solvation = 78.770496 kcal Electronic energy + Delta-G solvation = -18920.082714 eV Core-core repulsion = 15986.447877 eV Total energy + Delta-G solvation = -2933.634837 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.25074 -40.17011 -37.95689 -36.64442 -34.91298 -34.05515 -32.48060 -31.90186 -29.90495 -26.59879 -26.05680 -23.99042 -23.77081 -22.84065 -21.26719 -19.50626 -19.07653 -18.84531 -18.23800 -16.89584 -16.56355 -16.36448 -15.92703 -15.77383 -15.41441 -15.32300 -15.17749 -14.84403 -14.22538 -14.04059 -13.94010 -13.31431 -13.18362 -12.88362 -12.40687 -12.31235 -12.22383 -12.18091 -12.03549 -11.79560 -11.67569 -11.35669 -11.01293 -10.88983 -10.57866 -10.04901 -9.19069 -4.96086 -0.12321 0.00547 1.31143 1.65019 1.69642 1.83210 1.86746 1.96524 2.64232 2.94143 3.32671 3.40817 3.46235 3.57751 3.63330 3.68897 3.87714 4.02796 4.10773 4.13076 4.16699 4.32732 4.36567 4.40459 4.53992 4.57684 4.67443 4.71533 4.90961 4.99629 5.05098 5.06578 5.12137 5.21000 5.23975 5.35143 5.64777 5.90211 6.30718 6.66394 6.96382 7.14303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.211 4.211 3 C 0.020 3.980 4 H 0.103 0.897 5 C -0.100 4.100 6 C -0.119 4.119 7 C 0.162 3.838 8 H 0.074 0.926 9 N -0.685 5.685 10 C 0.552 3.448 11 N -0.578 5.578 12 C 0.174 3.826 13 C -0.254 4.254 14 C -0.052 4.052 15 O -0.565 6.565 16 Si 0.769 3.231 17 C 0.219 3.781 18 N -0.584 5.584 19 C -0.118 4.118 20 C -0.101 4.101 21 H 0.238 0.762 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.421 0.579 27 H 0.160 0.840 28 H 0.103 0.897 29 H 0.406 0.594 30 H -0.286 1.286 31 H -0.298 1.298 32 H 0.194 0.806 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 1.789 -1.989 3.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.211 4.211 3 C 0.003 3.997 4 H 0.121 0.879 5 C -0.139 4.139 6 C -0.158 4.158 7 C 0.057 3.943 8 H 0.093 0.907 9 N -0.321 5.321 10 C 0.195 3.805 11 N -0.301 5.301 12 C 0.007 3.993 13 C -0.262 4.262 14 C -0.164 4.164 15 O -0.375 6.375 16 Si 0.676 3.324 17 C 0.051 3.949 18 N -0.306 5.306 19 C -0.156 4.156 20 C -0.139 4.139 21 H 0.255 0.745 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.259 0.741 27 H 0.176 0.824 28 H 0.121 0.879 29 H 0.258 0.742 30 H -0.213 1.213 31 H -0.226 1.226 32 H 0.211 0.789 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.676 0.690 -1.389 1.691 hybrid contribution 0.250 0.005 -0.105 0.271 sum 0.926 0.695 -1.493 1.890 Atomic orbital electron populations 1.25692 0.96961 1.00323 0.99843 1.23546 0.95161 1.01080 1.01272 1.18425 0.83771 1.01119 0.96430 0.87894 1.21431 0.94540 0.99296 0.98587 1.21850 0.95102 1.01974 0.96897 1.21026 0.77036 1.00565 0.95652 0.90741 1.44323 1.06272 1.14998 1.66510 1.19648 0.85559 0.87360 0.87912 1.67897 1.41098 1.02132 1.18964 1.22823 0.91906 0.94332 0.90204 1.21071 0.94954 0.99907 1.10234 1.24389 1.00952 0.97637 0.93383 1.86429 1.61811 1.51307 1.37970 0.94204 0.78312 0.82997 0.76919 1.23264 1.01505 0.85218 0.84910 1.68041 1.06908 1.31304 1.24308 1.21762 0.95382 1.00103 0.98336 1.21444 0.94352 1.02331 0.95753 0.74515 0.91215 0.92121 0.92920 0.90604 0.74060 0.82374 0.87926 0.74229 1.21324 1.22614 0.78880 0.89326 0.90358 0.90087 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.62 19.25 74.32 1.43 0.81 16 2 C -0.21 -0.88 12.56 31.12 0.39 -0.49 16 3 C 0.02 0.01 2.57 -12.60 -0.03 -0.03 16 4 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 5 C -0.10 -0.11 5.16 30.60 0.16 0.04 16 6 C -0.12 -0.16 5.51 30.59 0.17 0.01 16 7 C 0.16 0.25 2.44 44.99 0.11 0.35 16 8 H 0.07 0.42 7.51 -2.38 -0.02 0.40 16 9 N -0.68 -2.49 5.22 -330.41 -1.73 -4.21 16 10 C 0.55 5.01 8.40 261.48 2.20 7.20 16 11 N -0.58 -5.98 9.21 -197.98 -1.82 -7.80 16 12 C 0.17 1.37 9.92 84.72 0.84 2.21 16 13 C -0.25 -1.17 5.43 -19.69 -0.11 -1.28 16 14 C -0.05 0.14 2.84 71.24 0.20 0.34 16 15 O -0.56 1.54 12.76 -148.98 -1.90 -0.37 16 16 Si 0.77 -2.63 29.87 68.60 2.05 -0.58 16 17 C 0.22 1.15 10.92 84.71 0.93 2.07 16 18 N -0.58 -5.15 10.46 -197.99 -2.07 -7.22 16 19 C -0.12 0.33 5.39 30.59 0.16 0.49 16 20 C -0.10 0.14 5.16 30.59 0.16 0.30 16 21 H 0.24 -0.82 7.80 -4.42 -0.03 -0.86 16 22 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 23 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 24 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.42 0.17 8.72 -92.71 -0.81 -0.64 16 27 H 0.16 0.91 5.04 -2.91 -0.01 0.89 16 28 H 0.10 -0.79 7.96 -2.38 -0.02 -0.81 16 29 H 0.41 -5.40 8.74 -74.05 -0.65 -6.04 16 30 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 31 H -0.30 -1.41 7.11 99.48 0.71 -0.70 16 32 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 36 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -17.34 304.39 0.81 -16.53 By element: Atomic # 1 Polarization: -8.06 SS G_CDS: -0.33 Total: -8.39 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.61 Total: 12.05 kcal Atomic # 7 Polarization: -13.62 SS G_CDS: -5.62 Total: -19.24 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: -1.90 Total: -0.37 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.05 Total: -0.58 kcal Total: -17.34 0.81 -16.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12865464_12175864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.296 kcal (2) G-P(sol) polarization free energy of solvation -17.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds