Wall clock time and date at job start Tue Mar 9 2021 13:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33329 * 125.95000 * 2 1 4 4 C 1.50703 * 122.70821 * 359.97438 * 3 2 1 5 5 O 1.42899 * 109.47326 * 330.00242 * 4 3 2 6 6 Si 1.86303 * 109.47003 * 210.00294 * 4 3 2 7 7 N 1.32115 * 114.57992 * 179.75508 * 3 2 1 8 8 C 1.29689 * 116.86611 * 0.47035 * 7 3 2 9 9 N 1.38609 * 124.94934 * 179.81861 * 8 7 3 10 10 C 1.46499 * 120.00038 * 172.94286 * 9 8 7 11 11 C 1.50705 * 112.85355 * 305.29434 * 10 9 8 12 12 C 1.38240 * 119.98317 * 338.07923 * 11 10 9 13 13 C 1.38228 * 120.00527 * 179.76888 * 12 11 10 14 14 C 1.38329 * 119.98765 * 0.50086 * 13 12 11 15 15 Br 1.89099 * 120.00699 * 179.76802 * 14 13 12 16 16 C 1.38326 * 119.98020 * 359.75067 * 14 13 12 17 17 C 1.38214 * 119.98837 * 359.97438 * 16 14 13 18 18 C 1.53782 * 113.61534 * 174.09609 * 10 9 8 19 19 C 1.53777 * 87.08081 * 270.79957 * 18 10 9 20 20 H 1.09002 * 113.62034 * 219.93305 * 19 18 10 21 21 O 1.42903 * 113.61319 * 89.11601 * 19 18 10 22 22 C 1.53781 * 87.17404 * 334.52509 * 19 18 10 23 23 S 1.70966 * 110.10069 * 359.54672 * 8 7 3 24 24 H 1.09003 * 109.46744 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47154 * 299.98026 * 1 2 3 26 26 H 1.08997 * 109.47099 * 59.98105 * 1 2 3 27 27 H 1.09004 * 109.46707 * 90.00622 * 4 3 2 28 28 H 0.96699 * 114.00420 * 300.00547 * 5 4 3 29 29 H 1.48505 * 109.99896 * 58.68707 * 6 4 3 30 30 H 1.48499 * 109.99859 * 179.97438 * 6 4 3 31 31 H 0.97000 * 120.00142 * 352.94927 * 9 8 7 32 32 H 1.08000 * 119.99919 * 0.02562 * 12 11 10 33 33 H 1.07994 * 120.00310 * 180.27538 * 13 12 11 34 34 H 1.08001 * 120.00077 * 179.97438 * 16 14 13 35 35 H 1.08004 * 119.99097 * 180.02562 * 17 16 14 36 36 H 1.08999 * 113.60977 * 156.25437 * 18 10 9 37 37 H 1.08997 * 113.69132 * 25.36424 * 18 10 9 38 38 H 0.96703 * 114.00053 * 181.52850 * 21 19 18 39 39 H 1.09010 * 113.61324 * 140.02070 * 22 19 18 40 40 H 1.09001 * 113.61878 * 270.92240 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4814 2.5019 -0.6746 6 14 2.9324 3.6148 -0.8788 7 7 3.5850 0.8189 0.0051 8 6 3.9315 -0.4308 0.0000 9 7 5.2385 -0.8924 0.0005 10 6 5.5095 -2.3243 0.1502 11 6 4.8740 -2.9146 1.3826 12 6 4.5305 -2.0961 2.4423 13 6 3.9432 -2.6363 3.5710 14 6 3.7088 -3.9976 3.6441 15 35 2.9114 -4.7382 5.1906 16 6 4.0574 -4.8169 2.5855 17 6 4.6394 -4.2750 1.4551 18 6 6.9942 -2.6906 -0.0129 19 6 6.7088 -2.8495 -1.5156 20 1 7.2184 -3.6995 -1.9694 21 8 6.8739 -1.6413 -2.2606 22 6 5.2489 -3.1408 -1.1299 23 16 2.5413 -1.4260 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5135 0.8901 26 1 -0.3633 0.5141 -0.8898 27 1 1.6088 2.8217 1.0270 28 1 0.5239 2.2118 -1.5961 29 1 3.1461 3.1453 -2.2714 30 1 2.4028 5.0021 -0.8867 31 1 5.9736 -0.2674 -0.0982 32 1 4.7173 -1.0338 2.3867 33 1 3.6709 -1.9962 4.3970 34 1 3.8749 -5.8799 2.6424 35 1 4.9113 -4.9146 0.6283 36 1 7.2706 -3.6227 0.4799 37 1 7.6753 -1.8715 0.2180 38 1 6.6732 -1.7294 -3.2024 39 1 4.5207 -2.6839 -1.8002 40 1 5.0490 -4.1957 -0.9419 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12891096_15704122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:36 Heat of formation + Delta-G solvation = 47.306347 kcal Electronic energy + Delta-G solvation = -27208.572535 eV Core-core repulsion = 23357.661373 eV Total energy + Delta-G solvation = -3850.911162 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.013 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94707 -40.92996 -39.53601 -37.96050 -36.58124 -34.68441 -33.18429 -32.53116 -31.93082 -30.34461 -29.27786 -27.07766 -25.90473 -25.36765 -24.19584 -23.86479 -22.38112 -20.85066 -20.56277 -18.99650 -18.59162 -18.04521 -17.73190 -17.25053 -16.82543 -16.64854 -16.28879 -15.95419 -15.75588 -15.55343 -15.23842 -15.08583 -14.52933 -14.39145 -14.25722 -14.08643 -13.85516 -13.60575 -13.56808 -13.38110 -13.17035 -12.85365 -12.58241 -12.47128 -12.33265 -12.23703 -11.98966 -11.69864 -11.60469 -11.30179 -11.02753 -10.71617 -10.63675 -10.53093 -10.17256 -9.93238 -9.54635 -8.63633 -4.80494 -0.08018 -0.02163 0.19783 0.26250 0.61887 0.79189 1.28200 1.64749 1.78384 1.85903 1.98040 2.47032 3.08554 3.25605 3.33949 3.44719 3.50820 3.54569 3.78548 3.81839 3.87586 4.13380 4.25156 4.30493 4.33959 4.40085 4.53255 4.57451 4.68352 4.76816 4.79256 4.81271 4.85849 4.88537 4.95633 4.99850 5.04874 5.13134 5.18101 5.26306 5.33976 5.72753 5.75015 6.28868 6.41823 6.85112 6.92779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.264 4.264 3 C 0.056 3.944 4 C -0.040 4.040 5 O -0.532 6.532 6 Si 0.780 3.220 7 N -0.556 5.556 8 C 0.319 3.681 9 N -0.657 5.657 10 C 0.189 3.811 11 C -0.077 4.077 12 C -0.102 4.102 13 C -0.097 4.097 14 C -0.096 4.096 15 Br -0.058 7.058 16 C -0.090 4.090 17 C -0.096 4.096 18 C -0.116 4.116 19 C 0.086 3.914 20 H 0.097 0.903 21 O -0.567 6.567 22 C -0.180 4.180 23 S 0.125 5.875 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.384 0.616 29 H -0.304 1.304 30 H -0.291 1.291 31 H 0.419 0.581 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.071 0.929 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 -5.783 -2.544 7.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.387 4.387 3 C -0.075 4.075 4 C -0.153 4.153 5 O -0.339 6.339 6 Si 0.686 3.314 7 N -0.283 5.283 8 C -0.052 4.052 9 N -0.296 5.296 10 C 0.101 3.899 11 C -0.080 4.080 12 C -0.121 4.121 13 C -0.117 4.117 14 C -0.176 4.176 15 Br 0.027 6.973 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.153 4.153 19 C 0.027 3.973 20 H 0.115 0.885 21 O -0.375 6.375 22 C -0.219 4.219 23 S 0.376 5.624 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.147 0.853 28 H 0.234 0.766 29 H -0.232 1.232 30 H -0.219 1.219 31 H 0.259 0.741 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.090 0.910 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.856 -5.932 -1.451 7.223 hybrid contribution -0.944 0.843 -1.321 1.829 sum 2.911 -5.089 -2.772 6.485 Atomic orbital electron populations 1.20125 0.85941 1.01887 1.03599 1.25428 1.02080 0.93811 1.17353 1.20159 0.87046 0.97447 1.02830 1.24469 0.91697 0.95158 1.03957 1.86595 1.28640 1.89062 1.29635 0.92875 0.85370 0.73881 0.79312 1.65737 1.17138 1.17162 1.28304 1.23308 0.92477 0.91245 0.98151 1.43522 1.01312 1.06824 1.77967 1.20292 0.98057 0.79280 0.92232 1.20052 0.98715 0.94338 0.94875 1.20991 0.98206 1.00030 0.92864 1.21148 0.98341 0.93401 0.98813 1.21971 1.05169 0.95742 0.94683 1.96778 1.81018 1.84347 1.35157 1.21352 0.97190 1.00656 0.91819 1.21253 0.97945 0.93897 0.98356 1.23461 0.92094 1.04694 0.95074 1.22701 0.94264 0.87899 0.92456 0.88494 1.86419 1.91186 1.33937 1.25929 1.24460 0.99342 1.02060 0.95997 1.84003 0.95697 1.09464 1.73248 0.91936 0.91159 0.89607 0.85306 0.76647 1.23175 1.21891 0.74078 0.86299 0.85215 0.83249 0.81758 0.84696 0.89758 0.75428 0.91031 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 8.91 71.24 0.63 0.52 16 2 C -0.26 -1.30 6.50 24.58 0.16 -1.14 16 3 C 0.06 0.33 5.91 41.41 0.24 0.58 16 4 C -0.04 -0.16 2.94 71.24 0.21 0.05 16 5 O -0.53 -1.89 10.17 -148.98 -1.52 -3.40 16 6 Si 0.78 3.52 32.09 68.60 2.20 5.72 16 7 N -0.56 -3.56 8.95 -189.86 -1.70 -5.26 16 8 C 0.32 1.13 6.68 179.32 1.20 2.33 16 9 N -0.66 0.46 4.19 -311.29 -1.30 -0.84 16 10 C 0.19 -0.94 0.87 3.48 0.00 -0.94 16 11 C -0.08 0.25 3.82 -19.86 -0.08 0.17 16 12 C -0.10 -0.06 8.00 22.27 0.18 0.12 16 13 C -0.10 -0.16 9.79 22.29 0.22 0.05 16 14 C -0.10 -0.10 6.22 22.31 0.14 0.04 16 15 Br -0.06 -0.14 33.70 -20.37 -0.69 -0.83 16 16 C -0.09 0.25 9.79 22.28 0.22 0.47 16 17 C -0.10 0.54 9.14 22.26 0.20 0.74 16 18 C -0.12 0.92 7.13 31.12 0.22 1.14 16 19 C 0.09 -0.72 5.27 31.12 0.16 -0.56 16 20 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 21 O -0.57 2.62 13.08 -148.98 -1.95 0.67 16 22 C -0.18 1.38 6.69 31.21 0.21 1.59 16 23 S 0.13 0.34 19.96 -56.49 -1.13 -0.79 16 24 H 0.06 0.04 8.14 -2.39 -0.02 0.03 16 25 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.09 0.02 6.39 -2.39 -0.02 0.01 16 27 H 0.13 0.31 7.96 -2.39 -0.02 0.29 16 28 H 0.38 -0.44 8.13 -74.06 -0.60 -1.04 16 29 H -0.30 -3.22 7.11 99.48 0.71 -2.52 16 30 H -0.29 -2.70 7.11 99.48 0.71 -2.00 16 31 H 0.42 -0.13 8.74 -92.71 -0.81 -0.94 16 32 H 0.12 0.29 6.82 -2.91 -0.02 0.27 16 33 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 34 H 0.15 -0.86 8.06 -2.91 -0.02 -0.88 16 35 H 0.17 -1.95 6.08 -2.91 -0.02 -1.97 16 36 H 0.14 -1.58 8.05 -2.39 -0.02 -1.59 16 37 H 0.08 -0.50 8.10 -2.39 -0.02 -0.52 16 38 H 0.40 -4.11 9.12 -74.06 -0.68 -4.79 16 39 H 0.07 -0.30 7.96 -2.38 -0.02 -0.31 16 40 H 0.13 -1.54 5.88 -2.39 -0.01 -1.55 16 Total: 0.00 -14.84 357.80 -3.08 -17.91 By element: Atomic # 1 Polarization: -17.43 SS G_CDS: -0.92 Total: -18.35 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 3.92 Total: 5.17 kcal Atomic # 7 Polarization: -3.10 SS G_CDS: -3.00 Total: -6.10 kcal Atomic # 8 Polarization: 0.73 SS G_CDS: -3.46 Total: -2.73 kcal Atomic # 14 Polarization: 3.52 SS G_CDS: 2.20 Total: 5.72 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.13 Total: -0.79 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.83 kcal Total: -14.84 -3.08 -17.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12891096_15704122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.221 kcal (2) G-P(sol) polarization free energy of solvation -14.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds