Wall clock time and date at job start Tue Mar 9 2021 13:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86296 * 109.47250 * 2 1 4 4 C 1.50695 * 109.47253 * 239.99700 * 2 1 3 5 5 C 1.37982 * 120.32497 * 120.00579 * 4 2 1 6 6 N 1.32007 * 120.90010 * 179.97438 * 5 4 2 7 7 C 1.32333 * 121.65038 * 0.02562 * 6 5 4 8 8 N 1.39141 * 119.72335 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00077 * 355.55863 * 8 7 6 10 10 C 1.50708 * 112.84637 * 72.41337 * 9 8 7 11 11 C 1.38238 * 119.98927 * 192.01233 * 10 9 8 12 12 C 1.38221 * 120.00720 * 179.72716 * 11 10 9 13 13 C 1.38322 * 119.98991 * 0.54327 * 12 11 10 14 14 Br 1.89105 * 120.01127 * 179.70571 * 13 12 11 15 15 C 1.38327 * 119.98214 * 359.72953 * 13 12 11 16 16 C 1.38218 * 119.98569 * 359.97438 * 15 13 12 17 17 C 1.53783 * 113.61750 * 301.22271 * 9 8 7 18 18 C 1.53786 * 87.07576 * 270.88002 * 17 9 8 19 19 H 1.09009 * 113.60945 * 219.93450 * 18 17 9 20 20 O 1.42899 * 113.61383 * 89.11572 * 18 17 9 21 21 C 1.53774 * 113.61959 * 203.71599 * 9 8 7 22 22 C 1.39346 * 120.56307 * 359.97438 * 7 6 5 23 23 F 1.35096 * 120.47631 * 180.02562 * 22 7 6 24 24 C 1.38442 * 119.05553 * 359.97438 * 22 7 6 25 25 H 0.96700 * 113.99920 * 60.00133 * 1 2 3 26 26 H 1.09004 * 109.46676 * 119.99818 * 2 1 3 27 27 H 1.48501 * 109.99975 * 298.67906 * 3 2 1 28 28 H 1.48499 * 110.00051 * 59.99540 * 3 2 1 29 29 H 1.08003 * 119.55451 * 0.02562 * 5 4 2 30 30 H 0.97008 * 120.00426 * 175.56451 * 8 7 6 31 31 H 1.07997 * 119.99636 * 359.97058 * 11 10 9 32 32 H 1.07998 * 120.00551 * 180.28998 * 12 11 10 33 33 H 1.08000 * 120.00718 * 180.02562 * 15 13 12 34 34 H 1.08001 * 119.99526 * 179.97438 * 16 15 13 35 35 H 1.08997 * 113.61108 * 25.42351 * 17 9 8 36 36 H 1.08997 * 113.61637 * 156.24710 * 17 9 8 37 37 H 0.96702 * 113.99182 * 179.97438 * 20 18 17 38 38 H 1.08997 * 113.61838 * 203.66147 * 21 9 8 39 39 H 1.09003 * 113.61628 * 334.57739 * 21 9 8 40 40 H 1.07997 * 120.76140 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7251 -0.0464 -2.1430 6 7 3.1718 -0.6578 -3.2243 7 6 2.8792 -1.9234 -3.4773 8 7 3.3713 -2.5281 -4.6298 9 6 4.1275 -1.7390 -5.6053 10 6 5.5077 -1.3764 -5.1208 11 6 6.2544 -0.4346 -5.8038 12 6 7.5181 -0.0976 -5.3565 13 6 8.0399 -0.7110 -4.2319 14 35 9.7720 -0.2565 -3.6243 15 6 7.2946 -1.6575 -3.5521 16 6 6.0286 -1.9894 -3.9966 17 6 3.3415 -0.5463 -6.1750 18 6 2.8318 -1.5039 -7.2650 19 1 2.7832 -1.0515 -8.2556 20 8 1.6297 -2.1893 -6.9083 21 6 4.1065 -2.3300 -7.0248 22 6 2.0825 -2.6556 -2.5993 23 9 1.7854 -3.9476 -2.8591 24 6 1.6007 -2.0406 -1.4564 25 1 -0.3933 0.4417 -0.7651 26 1 1.7922 -0.5138 0.8901 27 1 1.5879 2.4585 -1.2243 28 1 1.5614 2.4679 1.2084 29 1 2.9852 0.9874 -1.9699 30 1 3.2135 -3.4722 -4.7874 31 1 5.8489 0.0408 -6.6846 32 1 8.0996 0.6416 -5.8873 33 1 7.7014 -2.1364 -2.6737 34 1 5.4467 -2.7286 -3.4662 35 1 2.5570 -0.1833 -5.5111 36 1 3.9767 0.2531 -6.5564 37 1 1.3040 -2.7927 -7.5902 38 1 4.9507 -2.0188 -7.6399 39 1 3.9394 -3.4069 -7.0471 40 1 0.9813 -2.5822 -0.7570 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12891096_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:40 Heat of formation + Delta-G solvation = -5.434127 kcal Electronic energy + Delta-G solvation = -29179.100583 eV Core-core repulsion = 24922.833819 eV Total energy + Delta-G solvation = -4256.266764 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.032 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.81768 -42.11408 -40.95170 -39.51683 -38.08729 -36.65059 -34.86245 -33.14621 -33.10279 -32.04065 -31.12832 -30.18517 -27.27794 -26.59112 -25.65711 -24.52769 -23.72026 -22.95478 -22.34304 -20.49803 -19.42009 -18.79565 -18.37583 -18.24175 -17.78642 -17.49081 -16.87000 -16.67307 -16.36566 -16.18581 -15.96104 -15.86155 -15.58754 -15.42771 -14.98730 -14.67353 -14.52289 -14.28139 -14.26722 -13.98629 -13.79104 -13.50915 -13.22697 -13.06454 -12.71680 -12.64450 -12.41645 -12.22555 -12.01953 -11.90443 -11.46040 -11.33933 -11.17758 -10.90608 -10.70983 -10.55603 -10.46324 -9.99886 -9.48815 -8.76265 -4.99262 -0.01874 0.07607 0.17397 0.33387 0.71884 1.23688 1.55980 1.87097 1.93818 2.54221 2.60451 2.94097 3.07438 3.24106 3.31474 3.36910 3.51587 3.57021 3.59750 3.67064 3.79553 3.88054 3.91435 4.03384 4.20359 4.32340 4.40322 4.46999 4.47773 4.51626 4.58644 4.65972 4.73182 4.83074 4.84050 4.95897 5.00837 5.03430 5.20336 5.23250 5.36864 5.50888 5.79579 6.01519 6.17815 6.37114 6.55680 7.00957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.060 4.060 3 Si 0.680 3.320 4 C -0.207 4.207 5 C 0.145 3.855 6 N -0.500 5.500 7 C 0.398 3.602 8 N -0.686 5.686 9 C 0.209 3.791 10 C -0.051 4.051 11 C -0.108 4.108 12 C -0.087 4.087 13 C -0.091 4.091 14 Br -0.052 7.052 15 C -0.088 4.088 16 C -0.094 4.094 17 C -0.124 4.124 18 C 0.078 3.922 19 H 0.074 0.926 20 O -0.544 6.544 21 C -0.165 4.165 22 C -0.017 4.017 23 F -0.134 7.134 24 C -0.040 4.040 25 H 0.376 0.624 26 H 0.120 0.880 27 H -0.256 1.256 28 H -0.254 1.254 29 H 0.161 0.839 30 H 0.416 0.584 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.381 0.619 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 0.100 -3.477 3.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.171 4.171 3 Si 0.580 3.420 4 C -0.212 4.212 5 C -0.012 4.012 6 N -0.216 5.216 7 C 0.160 3.840 8 N -0.319 5.319 9 C 0.121 3.879 10 C -0.053 4.053 11 C -0.127 4.127 12 C -0.107 4.107 13 C -0.171 4.171 14 Br 0.033 6.967 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.162 4.162 18 C 0.019 3.981 19 H 0.092 0.908 20 O -0.349 6.349 21 C -0.203 4.203 22 C -0.044 4.044 23 F -0.113 7.113 24 C -0.066 4.066 25 H 0.224 0.776 26 H 0.137 0.863 27 H -0.181 1.181 28 H -0.178 1.178 29 H 0.178 0.822 30 H 0.254 0.746 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.228 0.772 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.203 1.646 -2.875 3.979 hybrid contribution -2.100 -1.753 -0.582 2.796 sum 0.103 -0.107 -3.457 3.460 Atomic orbital electron populations 1.86606 1.17710 1.79929 1.49370 1.24805 0.83889 1.10680 0.97737 0.95134 0.91635 0.74433 0.80777 1.20851 1.04884 0.95080 1.00374 1.22336 0.91786 0.99149 0.87916 1.67404 1.25516 1.07355 1.21339 1.18323 0.89799 0.89189 0.86713 1.43981 1.57851 1.11678 1.18355 1.19751 0.87533 0.93410 0.87207 1.19936 0.94660 0.95661 0.95089 1.20889 0.93850 0.97584 1.00354 1.21069 0.95698 0.99040 0.94870 1.21812 0.93275 1.02247 0.99752 1.96772 1.18104 1.92907 1.88890 1.21102 0.94135 0.96153 0.99374 1.20884 0.94558 0.99751 0.96124 1.23470 0.99880 0.95844 0.97051 1.22733 0.83986 0.93495 0.97909 0.90832 1.86539 1.40571 1.61277 1.46550 1.24059 1.00194 1.01562 0.94472 1.17989 1.06399 0.81048 0.98929 1.91490 1.92180 1.33593 1.94006 1.21251 0.96366 0.94276 0.94733 0.77591 0.86257 1.18085 1.17827 0.82227 0.74604 0.85082 0.84893 0.85186 0.85897 0.89081 0.87566 0.77208 0.87442 0.89926 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.40 12.78 -35.23 -0.45 -0.85 16 2 C -0.06 0.05 2.83 36.00 0.10 0.15 16 3 Si 0.68 -0.95 29.82 -169.99 -5.07 -6.02 16 4 C -0.21 0.02 5.40 -104.47 -0.56 -0.54 16 5 C 0.15 0.02 9.84 -17.57 -0.17 -0.16 16 6 N -0.50 -0.65 7.92 -12.37 -0.10 -0.75 16 7 C 0.40 0.53 6.15 -154.86 -0.95 -0.43 16 8 N -0.69 0.09 3.76 -47.97 -0.18 -0.09 16 9 C 0.21 -0.21 0.93 -132.16 -0.12 -0.34 16 10 C -0.05 0.01 4.84 -104.62 -0.51 -0.49 16 11 C -0.11 0.09 8.65 -39.59 -0.34 -0.25 16 12 C -0.09 0.00 9.79 -39.56 -0.39 -0.39 16 13 C -0.09 -0.09 6.22 -39.52 -0.25 -0.34 16 14 Br -0.05 -0.07 33.70 -68.01 -2.29 -2.36 16 15 C -0.09 -0.08 9.79 -39.56 -0.39 -0.46 16 16 C -0.09 -0.06 9.05 -39.59 -0.36 -0.42 16 17 C -0.12 0.11 6.52 -25.92 -0.17 -0.06 16 18 C 0.08 -0.16 5.28 -25.91 -0.14 -0.30 16 19 H 0.07 -0.24 8.14 -51.92 -0.42 -0.67 16 20 O -0.54 0.40 13.09 -35.23 -0.46 -0.06 16 21 C -0.16 0.45 7.13 -25.92 -0.18 0.27 16 22 C -0.02 -0.03 7.35 -39.09 -0.29 -0.32 16 23 F -0.13 -0.32 16.65 2.25 0.04 -0.29 16 24 C -0.04 -0.03 9.75 -39.26 -0.38 -0.42 16 25 H 0.38 -0.71 8.70 45.56 0.40 -0.31 16 26 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 27 H -0.26 -0.12 7.11 56.52 0.40 0.29 16 28 H -0.25 -0.49 7.11 56.52 0.40 -0.09 16 29 H 0.16 -0.28 4.88 -52.48 -0.26 -0.53 16 30 H 0.42 -0.29 8.20 -40.82 -0.33 -0.63 16 31 H 0.13 -0.40 6.61 -52.49 -0.35 -0.74 16 32 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16 33 H 0.13 0.01 8.06 -52.49 -0.42 -0.42 16 34 H 0.12 0.08 6.82 -52.49 -0.36 -0.27 16 35 H 0.09 0.16 6.87 -51.93 -0.36 -0.20 16 36 H 0.11 -0.25 6.27 -51.93 -0.33 -0.57 16 37 H 0.38 -1.69 9.12 45.56 0.42 -1.28 16 38 H 0.11 -0.40 7.75 -51.93 -0.40 -0.80 16 39 H 0.08 -0.24 8.11 -51.93 -0.42 -0.66 16 40 H 0.15 0.02 8.06 -52.49 -0.42 -0.40 16 LS Contribution 355.07 15.07 5.35 5.35 Total: 0.00 -6.50 355.07 -11.55 -18.05 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -3.29 Total: -8.48 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -5.10 Total: -4.49 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -0.28 Total: -0.85 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -0.91 Total: -0.92 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.04 Total: -0.29 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.07 Total: -6.02 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.29 Total: -2.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -6.50 -11.55 -18.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12891096_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.615 kcal (2) G-P(sol) polarization free energy of solvation -6.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds