Wall clock time and date at job start Tue Mar 9 2021 13:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86296 * 109.47250 * 2 1 4 4 C 1.50695 * 109.47253 * 239.99700 * 2 1 3 5 5 C 1.37982 * 120.32497 * 120.00579 * 4 2 1 6 6 N 1.32007 * 120.90010 * 179.97438 * 5 4 2 7 7 C 1.32333 * 121.65038 * 0.02562 * 6 5 4 8 8 N 1.39141 * 119.72335 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00077 * 355.55863 * 8 7 6 10 10 C 1.50708 * 112.84637 * 72.41337 * 9 8 7 11 11 C 1.38238 * 119.98927 * 192.01233 * 10 9 8 12 12 C 1.38221 * 120.00720 * 179.72716 * 11 10 9 13 13 C 1.38322 * 119.98991 * 0.54327 * 12 11 10 14 14 Br 1.89105 * 120.01127 * 179.70571 * 13 12 11 15 15 C 1.38327 * 119.98214 * 359.72953 * 13 12 11 16 16 C 1.38218 * 119.98569 * 359.97438 * 15 13 12 17 17 C 1.53783 * 113.61750 * 301.22271 * 9 8 7 18 18 C 1.53786 * 87.07576 * 270.88002 * 17 9 8 19 19 H 1.09009 * 113.60945 * 219.93450 * 18 17 9 20 20 O 1.42899 * 113.61383 * 89.11572 * 18 17 9 21 21 C 1.53774 * 113.61959 * 203.71599 * 9 8 7 22 22 C 1.39346 * 120.56307 * 359.97438 * 7 6 5 23 23 F 1.35096 * 120.47631 * 180.02562 * 22 7 6 24 24 C 1.38442 * 119.05553 * 359.97438 * 22 7 6 25 25 H 0.96700 * 113.99920 * 60.00133 * 1 2 3 26 26 H 1.09004 * 109.46676 * 119.99818 * 2 1 3 27 27 H 1.48501 * 109.99975 * 298.67906 * 3 2 1 28 28 H 1.48499 * 110.00051 * 59.99540 * 3 2 1 29 29 H 1.08003 * 119.55451 * 0.02562 * 5 4 2 30 30 H 0.97008 * 120.00426 * 175.56451 * 8 7 6 31 31 H 1.07997 * 119.99636 * 359.97058 * 11 10 9 32 32 H 1.07998 * 120.00551 * 180.28998 * 12 11 10 33 33 H 1.08000 * 120.00718 * 180.02562 * 15 13 12 34 34 H 1.08001 * 119.99526 * 179.97438 * 16 15 13 35 35 H 1.08997 * 113.61108 * 25.42351 * 17 9 8 36 36 H 1.08997 * 113.61637 * 156.24710 * 17 9 8 37 37 H 0.96702 * 113.99182 * 179.97438 * 20 18 17 38 38 H 1.08997 * 113.61838 * 203.66147 * 21 9 8 39 39 H 1.09003 * 113.61628 * 334.57739 * 21 9 8 40 40 H 1.07997 * 120.76140 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7251 -0.0464 -2.1430 6 7 3.1718 -0.6578 -3.2243 7 6 2.8792 -1.9234 -3.4773 8 7 3.3713 -2.5281 -4.6298 9 6 4.1275 -1.7390 -5.6053 10 6 5.5077 -1.3764 -5.1208 11 6 6.2544 -0.4346 -5.8038 12 6 7.5181 -0.0976 -5.3565 13 6 8.0399 -0.7110 -4.2319 14 35 9.7720 -0.2565 -3.6243 15 6 7.2946 -1.6575 -3.5521 16 6 6.0286 -1.9894 -3.9966 17 6 3.3415 -0.5463 -6.1750 18 6 2.8318 -1.5039 -7.2650 19 1 2.7832 -1.0515 -8.2556 20 8 1.6297 -2.1893 -6.9083 21 6 4.1065 -2.3300 -7.0248 22 6 2.0825 -2.6556 -2.5993 23 9 1.7854 -3.9476 -2.8591 24 6 1.6007 -2.0406 -1.4564 25 1 -0.3933 0.4417 -0.7651 26 1 1.7922 -0.5138 0.8901 27 1 1.5879 2.4585 -1.2243 28 1 1.5614 2.4679 1.2084 29 1 2.9852 0.9874 -1.9699 30 1 3.2135 -3.4722 -4.7874 31 1 5.8489 0.0408 -6.6846 32 1 8.0996 0.6416 -5.8873 33 1 7.7014 -2.1364 -2.6737 34 1 5.4467 -2.7286 -3.4662 35 1 2.5570 -0.1833 -5.5111 36 1 3.9767 0.2531 -6.5564 37 1 1.3040 -2.7927 -7.5902 38 1 4.9507 -2.0188 -7.6399 39 1 3.9394 -3.4069 -7.0471 40 1 0.9813 -2.5822 -0.7570 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12891096_17656566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:39 Heat of formation + Delta-G solvation = -2.480640 kcal Electronic energy + Delta-G solvation = -29178.972511 eV Core-core repulsion = 24922.833819 eV Total energy + Delta-G solvation = -4256.138691 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.032 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.94205 -42.04978 -40.93904 -39.44826 -38.08948 -36.56772 -34.81438 -33.18339 -33.09251 -32.01321 -31.12786 -30.18440 -27.16875 -26.51329 -25.62314 -24.52225 -23.68956 -22.97409 -22.26357 -20.40454 -19.43127 -18.72357 -18.39411 -18.21088 -17.76122 -17.47808 -16.95215 -16.62510 -16.30244 -16.18081 -15.96342 -15.81065 -15.50407 -15.48678 -14.90717 -14.65961 -14.48965 -14.31751 -14.25637 -14.02560 -13.72166 -13.47963 -13.13662 -12.97784 -12.67953 -12.55999 -12.38092 -12.19305 -12.07909 -11.86006 -11.44249 -11.24361 -11.20517 -10.85516 -10.66055 -10.56610 -10.49056 -9.97480 -9.48057 -8.76875 -4.91742 -0.06355 0.09107 0.13670 0.35838 0.68925 1.29518 1.60061 1.91313 1.96306 2.56947 2.58048 3.02896 3.16828 3.26386 3.41445 3.49660 3.59849 3.62627 3.70820 3.80272 3.84687 3.86420 3.96307 4.05677 4.33512 4.38488 4.46295 4.49627 4.55853 4.67813 4.72835 4.73792 4.83092 4.93664 4.96246 5.00144 5.05482 5.09513 5.23599 5.25556 5.38342 5.52887 5.83620 6.05738 6.17821 6.48013 6.88460 6.99341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.066 4.066 3 Si 0.759 3.241 4 C -0.202 4.202 5 C 0.143 3.857 6 N -0.509 5.509 7 C 0.393 3.607 8 N -0.683 5.683 9 C 0.204 3.796 10 C -0.051 4.051 11 C -0.105 4.105 12 C -0.091 4.091 13 C -0.103 4.103 14 Br -0.061 7.061 15 C -0.098 4.098 16 C -0.103 4.103 17 C -0.128 4.128 18 C 0.080 3.920 19 H 0.091 0.909 20 O -0.567 6.567 21 C -0.154 4.154 22 C -0.037 4.037 23 F -0.142 7.142 24 C -0.044 4.044 25 H 0.386 0.614 26 H 0.128 0.872 27 H -0.277 1.277 28 H -0.299 1.299 29 H 0.178 0.822 30 H 0.416 0.584 31 H 0.156 0.844 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.395 0.605 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 0.518 -4.670 4.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.175 4.175 3 Si 0.663 3.337 4 C -0.208 4.208 5 C -0.014 4.014 6 N -0.226 5.226 7 C 0.155 3.845 8 N -0.315 5.315 9 C 0.116 3.884 10 C -0.053 4.053 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.183 4.183 14 Br 0.025 6.975 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.166 4.166 18 C 0.021 3.979 19 H 0.109 0.891 20 O -0.375 6.375 21 C -0.192 4.192 22 C -0.063 4.063 23 F -0.121 7.121 24 C -0.070 4.070 25 H 0.235 0.765 26 H 0.146 0.854 27 H -0.204 1.204 28 H -0.226 1.226 29 H 0.194 0.806 30 H 0.255 0.745 31 H 0.174 0.826 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.244 0.756 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.478 2.032 -4.099 5.203 hybrid contribution -2.240 -1.860 -0.193 2.918 sum 0.238 0.172 -4.292 4.302 Atomic orbital electron populations 1.86578 1.18518 1.80328 1.50181 1.24996 0.83325 1.11415 0.97790 0.94219 0.90351 0.72074 0.77025 1.20864 1.04694 0.94686 1.00526 1.22653 0.91398 0.99830 0.87561 1.67447 1.25944 1.07369 1.21807 1.18433 0.89742 0.89262 0.87065 1.44042 1.57514 1.11798 1.18131 1.19904 0.86940 0.93783 0.87782 1.20078 0.95000 0.95519 0.94738 1.21145 0.93328 0.97024 1.00849 1.21290 0.96167 0.99081 0.94534 1.21899 0.93077 1.02834 1.00453 1.96753 1.18749 1.92946 1.89085 1.21163 0.94404 0.96501 0.99672 1.20891 0.94527 1.00094 0.96700 1.23536 0.99490 0.96385 0.97164 1.22777 0.83806 0.93204 0.98131 0.89088 1.86501 1.41252 1.61890 1.47878 1.24051 1.00376 1.01677 0.93067 1.18158 1.07471 0.80964 0.99722 1.91459 1.92367 1.34141 1.94138 1.21379 0.96291 0.94736 0.94575 0.76474 0.85392 1.20354 1.22647 0.80597 0.74514 0.82608 0.83698 0.85151 0.86522 0.91735 0.86011 0.75568 0.85854 0.89631 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.97 12.78 -148.98 -1.90 -2.87 16 2 C -0.07 0.10 2.83 71.23 0.20 0.30 16 3 Si 0.76 -2.09 29.82 68.60 2.05 -0.05 16 4 C -0.20 -0.02 5.40 -19.77 -0.11 -0.13 16 5 C 0.14 0.05 9.84 84.61 0.83 0.89 16 6 N -0.51 -1.56 7.92 -193.04 -1.53 -3.09 16 7 C 0.39 1.37 6.15 133.09 0.82 2.18 16 8 N -0.68 -0.20 3.76 -305.67 -1.15 -1.35 16 9 C 0.20 -0.50 0.93 3.38 0.00 -0.49 16 10 C -0.05 0.05 4.84 -19.86 -0.10 -0.05 16 11 C -0.10 0.32 8.65 22.27 0.19 0.51 16 12 C -0.09 0.07 9.79 22.29 0.22 0.29 16 13 C -0.10 -0.22 6.22 22.31 0.14 -0.08 16 14 Br -0.06 -0.17 33.70 -20.37 -0.69 -0.86 16 15 C -0.10 -0.23 9.79 22.29 0.22 -0.01 16 16 C -0.10 -0.18 9.05 22.27 0.20 0.03 16 17 C -0.13 0.30 6.52 31.12 0.20 0.51 16 18 C 0.08 -0.41 5.28 31.12 0.16 -0.25 16 19 H 0.09 -0.78 8.14 -2.38 -0.02 -0.80 16 20 O -0.57 0.99 13.09 -148.98 -1.95 -0.96 16 21 C -0.15 1.04 7.13 31.12 0.22 1.27 16 22 C -0.04 -0.17 7.35 22.59 0.17 0.00 16 23 F -0.14 -0.88 16.65 44.97 0.75 -0.13 16 24 C -0.04 -0.11 9.75 22.48 0.22 0.11 16 25 H 0.39 -1.33 8.70 -74.06 -0.64 -1.97 16 26 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 27 H -0.28 -0.21 7.11 99.48 0.71 0.49 16 28 H -0.30 -1.48 7.11 99.48 0.71 -0.77 16 29 H 0.18 -0.68 4.88 -2.91 -0.01 -0.70 16 30 H 0.42 -0.25 8.20 -92.70 -0.76 -1.01 16 31 H 0.16 -1.32 6.61 -2.91 -0.02 -1.34 16 32 H 0.15 -0.53 8.06 -2.91 -0.02 -0.55 16 33 H 0.13 0.17 8.06 -2.91 -0.02 0.14 16 34 H 0.12 0.29 6.82 -2.91 -0.02 0.27 16 35 H 0.06 0.24 6.87 -2.39 -0.02 0.22 16 36 H 0.12 -0.76 6.27 -2.39 -0.01 -0.77 16 37 H 0.39 -3.67 9.12 -74.06 -0.68 -4.34 16 38 H 0.12 -1.21 7.75 -2.39 -0.02 -1.23 16 39 H 0.09 -0.60 8.11 -2.39 -0.02 -0.61 16 40 H 0.15 0.18 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -15.77 355.07 -1.73 -17.50 By element: Atomic # 1 Polarization: -12.36 SS G_CDS: -0.90 Total: -13.25 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 3.60 Total: 5.06 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -2.68 Total: -4.44 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -3.85 Total: -3.84 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.75 Total: -0.13 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.05 Total: -0.05 kcal Atomic # 35 Polarization: -0.17 SS G_CDS: -0.69 Total: -0.86 kcal Total: -15.77 -1.73 -17.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12891096_17656566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.020 kcal (2) G-P(sol) polarization free energy of solvation -15.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds