Wall clock time and date at job start Tue Mar 9 2021 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33324 * 125.94869 * 2 1 4 4 C 1.50697 * 122.71457 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47210 * 330.00259 * 4 3 2 6 6 Si 1.86299 * 109.47482 * 210.00090 * 4 3 2 7 7 N 1.32125 * 114.57644 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86515 * 359.97438 * 7 3 2 9 9 N 1.38620 * 124.94533 * 179.97438 * 8 7 3 10 10 C 1.46498 * 119.99673 * 180.28014 * 9 8 7 11 11 H 1.09001 * 112.85160 * 25.05395 * 10 9 8 12 12 C 1.53784 * 113.61507 * 156.25369 * 10 9 8 13 13 C 1.53776 * 87.08293 * 139.97795 * 12 10 9 14 14 H 1.08999 * 113.61416 * 89.11646 * 13 12 10 15 15 C 1.52996 * 113.61729 * 220.01989 * 13 12 10 16 16 N 1.46495 * 109.47687 * 184.99933 * 15 13 12 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 13 18 18 O 1.21508 * 119.99816 * 359.97438 * 17 16 15 19 19 O 1.34633 * 119.99938 * 180.02562 * 17 16 15 20 20 C 1.45201 * 116.99834 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47240 * 59.99716 * 20 19 17 22 22 C 1.53004 * 109.47342 * 179.97438 * 20 19 17 23 23 C 1.52995 * 109.47326 * 299.99564 * 20 19 17 24 24 C 1.53781 * 113.61116 * 253.85749 * 10 9 8 25 25 S 1.70962 * 110.10379 * 0.24767 * 8 7 3 26 26 H 1.08993 * 109.47187 * 89.99752 * 1 2 3 27 27 H 1.09007 * 109.46780 * 209.99876 * 1 2 3 28 28 H 1.09000 * 109.46776 * 329.99385 * 1 2 3 29 29 H 1.09001 * 109.47157 * 89.99796 * 4 3 2 30 30 H 0.96694 * 114.00756 * 179.97438 * 5 4 3 31 31 H 1.48499 * 109.99757 * 59.99809 * 6 4 3 32 32 H 1.48499 * 110.00232 * 181.31901 * 6 4 3 33 33 H 0.97001 * 119.99882 * 359.97438 * 9 8 7 34 34 H 1.09000 * 113.61297 * 254.52834 * 12 10 9 35 35 H 1.08998 * 113.61005 * 25.34102 * 12 10 9 36 36 H 1.09003 * 109.46915 * 305.00053 * 15 13 12 37 37 H 1.09002 * 109.47200 * 64.99350 * 15 13 12 38 38 H 0.97005 * 119.99728 * 0.02562 * 16 15 13 39 39 H 1.08997 * 109.47072 * 59.99893 * 21 20 19 40 40 H 1.08993 * 109.47054 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.46861 * 300.00080 * 21 20 19 42 42 H 1.09009 * 109.46623 * 60.00053 * 22 20 19 43 43 H 1.08993 * 109.47382 * 179.97438 * 22 20 19 44 44 H 1.08997 * 109.47202 * 300.00249 * 22 20 19 45 45 H 1.09004 * 109.46961 * 59.99807 * 23 20 19 46 46 H 1.08993 * 109.47471 * 180.02562 * 23 20 19 47 47 H 1.09009 * 109.47184 * 300.00281 * 23 20 19 48 48 H 1.08995 * 113.61680 * 334.57196 * 24 10 9 49 49 H 1.09006 * 113.61326 * 105.47146 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6725 6 14 2.9320 3.6152 -0.8778 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3328 -0.0075 11 1 4.6898 -2.9136 -0.4360 12 6 6.8878 -2.7000 -0.5755 13 6 6.9809 -3.7515 0.5427 14 1 6.5673 -4.7212 0.2656 15 6 8.3714 -3.8551 1.1724 16 7 8.3900 -4.9578 2.1366 17 6 9.5186 -5.2386 2.8177 18 8 10.5208 -4.5773 2.6317 19 8 9.5358 -6.2524 3.7035 20 6 10.7858 -6.4978 4.4002 21 6 11.1803 -5.2511 5.1946 22 6 10.6126 -7.6785 5.3579 23 6 11.8816 -6.8222 3.3830 24 6 6.0035 -2.8725 1.3441 25 16 2.5413 -1.4260 -0.0066 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6096 2.8212 1.0284 30 1 0.0685 3.3760 -0.7101 31 1 3.1202 3.1648 -2.2803 32 1 2.4179 5.0082 -0.8563 33 1 5.9756 -0.2620 -0.0027 34 1 6.8481 -3.1294 -1.5765 35 1 7.6229 -1.9001 -0.4869 36 1 9.1102 -4.0415 0.3930 37 1 8.6095 -2.9219 1.6830 38 1 7.5902 -5.4865 2.2843 39 1 10.3996 -5.0200 5.9193 40 1 12.1188 -5.4352 5.7173 41 1 11.3035 -4.4097 4.5126 42 1 10.3314 -8.5668 4.7922 43 1 11.5511 -7.8630 5.8806 44 1 9.8321 -7.4470 6.0826 45 1 12.0048 -5.9808 2.7010 46 1 12.8198 -7.0069 3.9060 47 1 11.6005 -7.7105 2.8170 48 1 6.4968 -2.1205 1.9598 49 1 5.2509 -3.4411 1.8905 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_13437772_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:53 Heat of formation + Delta-G solvation = -39.977249 kcal Electronic energy + Delta-G solvation = -28949.409882 eV Core-core repulsion = 24812.951664 eV Total energy + Delta-G solvation = -4136.458218 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73806 -41.08845 -40.55507 -38.34266 -37.77739 -36.17029 -35.24875 -34.55101 -32.52819 -29.61308 -28.64456 -28.32163 -28.28226 -27.02373 -25.60588 -24.64935 -23.72533 -22.78574 -21.59054 -20.82093 -19.95455 -19.32570 -19.02907 -18.24691 -17.65433 -17.34702 -17.21539 -16.81704 -16.56888 -16.27529 -15.94256 -15.66571 -15.61267 -15.35050 -15.27385 -14.80168 -14.38333 -14.00716 -13.98236 -13.85111 -13.75161 -13.62437 -13.44994 -13.40159 -13.19844 -13.05508 -12.87526 -12.84089 -12.82024 -12.50555 -12.38275 -12.24790 -12.22287 -11.99869 -11.71979 -11.57356 -11.28587 -11.06472 -10.96416 -10.55893 -10.36954 -10.20451 -9.93020 -8.55087 -4.66074 0.10225 0.22851 0.84269 1.19177 1.39405 1.77350 1.87514 1.91021 2.00771 2.17796 3.02491 3.07090 3.13860 3.36439 3.45683 3.49881 3.78479 3.83709 3.84979 3.97154 3.97938 4.09378 4.23761 4.40200 4.41980 4.45016 4.46419 4.51426 4.53896 4.57093 4.63545 4.69504 4.78160 4.78704 4.79073 4.88388 4.89906 4.93665 4.95256 5.02074 5.08719 5.18540 5.22796 5.37007 5.38800 5.45666 5.60809 5.64544 6.29858 6.40834 6.47161 6.98552 7.43051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.230 4.230 3 C 0.105 3.895 4 C -0.042 4.042 5 O -0.535 6.535 6 Si 0.718 3.282 7 N -0.539 5.539 8 C 0.321 3.679 9 N -0.683 5.683 10 C 0.128 3.872 11 H 0.109 0.891 12 C -0.130 4.130 13 C -0.123 4.123 14 H 0.106 0.894 15 C 0.150 3.850 16 N -0.712 5.712 17 C 0.649 3.351 18 O -0.567 6.567 19 O -0.365 6.365 20 C 0.137 3.863 21 C -0.184 4.184 22 C -0.142 4.142 23 C -0.184 4.184 24 C -0.150 4.150 25 S 0.095 5.905 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.382 0.618 31 H -0.263 1.263 32 H -0.265 1.265 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.094 0.906 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -2.529 1.639 3.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.353 4.353 3 C -0.024 4.024 4 C -0.154 4.154 5 O -0.342 6.342 6 Si 0.618 3.382 7 N -0.266 5.266 8 C -0.050 4.050 9 N -0.323 5.323 10 C 0.022 3.978 11 H 0.126 0.874 12 C -0.169 4.169 13 C -0.142 4.142 14 H 0.124 0.876 15 C 0.027 3.973 16 N -0.371 5.371 17 C 0.402 3.598 18 O -0.456 6.456 19 O -0.280 6.280 20 C 0.100 3.900 21 C -0.241 4.241 22 C -0.199 4.199 23 C -0.241 4.241 24 C -0.189 4.189 25 S 0.344 5.656 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.230 0.770 31 H -0.188 1.188 32 H -0.191 1.191 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.241 0.759 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.113 0.887 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.740 -3.182 0.856 3.377 hybrid contribution -1.374 1.012 0.012 1.707 sum -0.635 -2.169 0.869 2.421 Atomic orbital electron populations 1.20089 0.86507 1.02362 1.02684 1.25102 1.01377 0.92609 1.16162 1.18751 0.86545 0.94924 1.02201 1.23987 0.92164 0.97814 1.01468 1.86574 1.33071 1.35039 1.79482 0.93683 0.87409 0.75013 0.82055 1.65603 1.16800 1.16650 1.27527 1.23233 0.91942 0.91203 0.98654 1.43947 1.01688 1.06558 1.80102 1.22622 0.97988 0.79580 0.97645 0.87355 1.23311 0.95976 0.98582 0.98993 1.22658 0.94971 0.99296 0.97278 0.87608 1.21315 0.96483 0.88818 0.90657 1.44692 1.12301 1.36591 1.43548 1.18105 0.83765 0.79478 0.78432 1.90924 1.32967 1.52893 1.68767 1.86303 1.40207 1.49255 1.52238 1.22115 0.80386 0.96186 0.91291 1.22521 1.02128 0.98581 1.00888 1.21880 1.03331 0.96319 0.98381 1.22522 0.98063 1.03476 1.00058 1.23751 0.98999 0.99257 0.96938 1.83892 0.96625 1.10713 1.74363 0.91084 0.92441 0.89611 0.90034 0.76986 1.18767 1.19060 0.74707 0.89606 0.88449 0.90700 0.90748 0.75857 0.92123 0.90935 0.89444 0.91403 0.89934 0.91394 0.89432 0.90935 0.92129 0.88710 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.96 36.01 0.32 0.24 16 2 C -0.23 -0.68 6.50 -36.02 -0.23 -0.91 16 3 C 0.11 0.36 5.95 -84.18 -0.50 -0.14 16 4 C -0.04 -0.06 2.82 36.00 0.10 0.04 16 5 O -0.53 -0.52 9.86 -35.23 -0.35 -0.86 16 6 Si 0.72 1.06 32.08 -169.99 -5.45 -4.39 16 7 N -0.54 -1.76 8.95 -11.36 -0.10 -1.86 16 8 C 0.32 0.53 8.24 -87.67 -0.72 -0.19 16 9 N -0.68 0.83 5.52 -54.99 -0.30 0.52 16 10 C 0.13 -0.41 4.20 -67.12 -0.28 -0.69 16 11 H 0.11 -0.34 7.10 -51.93 -0.37 -0.71 16 12 C -0.13 0.58 7.39 -25.92 -0.19 0.39 16 13 C -0.12 0.55 3.75 -89.72 -0.34 0.22 16 14 H 0.11 -0.56 8.14 -51.93 -0.42 -0.98 16 15 C 0.15 -0.35 5.51 -4.05 -0.02 -0.37 16 16 N -0.71 0.70 5.56 -65.28 -0.36 0.34 16 17 C 0.65 1.53 8.06 54.05 0.44 1.97 16 18 O -0.57 -2.72 11.88 -19.28 -0.23 -2.95 16 19 O -0.37 -0.78 9.94 -40.30 -0.40 -1.18 16 20 C 0.14 0.16 1.13 -90.62 -0.10 0.06 16 21 C -0.18 -0.22 8.37 37.16 0.31 0.09 16 22 C -0.14 0.12 8.85 37.16 0.33 0.45 16 23 C -0.18 -0.22 8.37 37.16 0.31 0.10 16 24 C -0.15 0.57 7.45 -25.82 -0.19 0.37 16 25 S 0.10 0.12 21.71 -107.50 -2.33 -2.22 16 26 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.06 0.02 8.14 -51.92 -0.42 -0.40 16 28 H 0.09 0.10 6.61 -51.93 -0.34 -0.24 16 29 H 0.08 -0.02 7.96 -51.93 -0.41 -0.43 16 30 H 0.38 -1.17 8.74 45.56 0.40 -0.78 16 31 H -0.26 -1.44 7.11 56.52 0.40 -1.03 16 32 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 33 H 0.41 -0.87 8.84 -40.82 -0.36 -1.23 16 34 H 0.09 -0.39 8.14 -51.93 -0.42 -0.82 16 35 H 0.10 -0.46 8.07 -51.93 -0.42 -0.88 16 36 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 37 H 0.07 -0.11 7.85 -51.93 -0.41 -0.52 16 38 H 0.41 -1.21 8.58 -40.82 -0.35 -1.56 16 39 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 40 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 41 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 42 H 0.07 -0.06 8.14 -51.92 -0.42 -0.49 16 43 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 44 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 45 H 0.09 0.29 5.88 -51.93 -0.31 -0.02 16 46 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 47 H 0.06 0.05 8.14 -51.92 -0.42 -0.37 16 48 H 0.09 -0.29 7.90 -51.93 -0.41 -0.70 16 49 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 LS Contribution 404.53 15.07 6.10 6.10 Total: 0.00 -7.98 404.53 -12.19 -20.17 By element: Atomic # 1 Polarization: -7.28 SS G_CDS: -7.98 Total: -15.26 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -0.77 Total: 1.60 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -0.77 Total: -1.00 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.98 Total: -5.00 kcal Atomic # 14 Polarization: 1.06 SS G_CDS: -5.45 Total: -4.39 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.33 Total: -2.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -7.98 -12.19 -20.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13437772_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -7.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds