Wall clock time and date at job start Tue Mar 9 2021 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33324 * 125.94869 * 2 1 4 4 C 1.50697 * 122.71457 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47210 * 330.00259 * 4 3 2 6 6 Si 1.86299 * 109.47482 * 210.00090 * 4 3 2 7 7 N 1.32125 * 114.57644 * 180.02562 * 3 2 1 8 8 C 1.29683 * 116.86515 * 359.97438 * 7 3 2 9 9 N 1.38620 * 124.94533 * 179.97438 * 8 7 3 10 10 C 1.46498 * 119.99673 * 180.28014 * 9 8 7 11 11 H 1.09001 * 112.85160 * 25.05395 * 10 9 8 12 12 C 1.53784 * 113.61507 * 156.25369 * 10 9 8 13 13 C 1.53776 * 87.08293 * 139.97795 * 12 10 9 14 14 H 1.08999 * 113.61416 * 89.11646 * 13 12 10 15 15 C 1.52996 * 113.61729 * 220.01989 * 13 12 10 16 16 N 1.46495 * 109.47687 * 184.99933 * 15 13 12 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 13 18 18 O 1.21508 * 119.99816 * 359.97438 * 17 16 15 19 19 O 1.34633 * 119.99938 * 180.02562 * 17 16 15 20 20 C 1.45201 * 116.99834 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47240 * 59.99716 * 20 19 17 22 22 C 1.53004 * 109.47342 * 179.97438 * 20 19 17 23 23 C 1.52995 * 109.47326 * 299.99564 * 20 19 17 24 24 C 1.53781 * 113.61116 * 253.85749 * 10 9 8 25 25 S 1.70962 * 110.10379 * 0.24767 * 8 7 3 26 26 H 1.08993 * 109.47187 * 89.99752 * 1 2 3 27 27 H 1.09007 * 109.46780 * 209.99876 * 1 2 3 28 28 H 1.09000 * 109.46776 * 329.99385 * 1 2 3 29 29 H 1.09001 * 109.47157 * 89.99796 * 4 3 2 30 30 H 0.96694 * 114.00756 * 179.97438 * 5 4 3 31 31 H 1.48499 * 109.99757 * 59.99809 * 6 4 3 32 32 H 1.48499 * 110.00232 * 181.31901 * 6 4 3 33 33 H 0.97001 * 119.99882 * 359.97438 * 9 8 7 34 34 H 1.09000 * 113.61297 * 254.52834 * 12 10 9 35 35 H 1.08998 * 113.61005 * 25.34102 * 12 10 9 36 36 H 1.09003 * 109.46915 * 305.00053 * 15 13 12 37 37 H 1.09002 * 109.47200 * 64.99350 * 15 13 12 38 38 H 0.97005 * 119.99728 * 0.02562 * 16 15 13 39 39 H 1.08997 * 109.47072 * 59.99893 * 21 20 19 40 40 H 1.08993 * 109.47054 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.46861 * 300.00080 * 21 20 19 42 42 H 1.09009 * 109.46623 * 60.00053 * 22 20 19 43 43 H 1.08993 * 109.47382 * 179.97438 * 22 20 19 44 44 H 1.08997 * 109.47202 * 300.00249 * 22 20 19 45 45 H 1.09004 * 109.46961 * 59.99807 * 23 20 19 46 46 H 1.08993 * 109.47471 * 180.02562 * 23 20 19 47 47 H 1.09009 * 109.47184 * 300.00281 * 23 20 19 48 48 H 1.08995 * 113.61680 * 334.57196 * 24 10 9 49 49 H 1.09006 * 113.61326 * 105.47146 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6725 6 14 2.9320 3.6152 -0.8778 7 7 3.5851 0.8188 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3328 -0.0075 11 1 4.6898 -2.9136 -0.4360 12 6 6.8878 -2.7000 -0.5755 13 6 6.9809 -3.7515 0.5427 14 1 6.5673 -4.7212 0.2656 15 6 8.3714 -3.8551 1.1724 16 7 8.3900 -4.9578 2.1366 17 6 9.5186 -5.2386 2.8177 18 8 10.5208 -4.5773 2.6317 19 8 9.5358 -6.2524 3.7035 20 6 10.7858 -6.4978 4.4002 21 6 11.1803 -5.2511 5.1946 22 6 10.6126 -7.6785 5.3579 23 6 11.8816 -6.8222 3.3830 24 6 6.0035 -2.8725 1.3441 25 16 2.5413 -1.4260 -0.0066 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6096 2.8212 1.0284 30 1 0.0685 3.3760 -0.7101 31 1 3.1202 3.1648 -2.2803 32 1 2.4179 5.0082 -0.8563 33 1 5.9756 -0.2620 -0.0027 34 1 6.8481 -3.1294 -1.5765 35 1 7.6229 -1.9001 -0.4869 36 1 9.1102 -4.0415 0.3930 37 1 8.6095 -2.9219 1.6830 38 1 7.5902 -5.4865 2.2843 39 1 10.3996 -5.0200 5.9193 40 1 12.1188 -5.4352 5.7173 41 1 11.3035 -4.4097 4.5126 42 1 10.3314 -8.5668 4.7922 43 1 11.5511 -7.8630 5.8806 44 1 9.8321 -7.4470 6.0826 45 1 12.0048 -5.9808 2.7010 46 1 12.8198 -7.0069 3.9060 47 1 11.6005 -7.7105 2.8170 48 1 6.4968 -2.1205 1.9598 49 1 5.2509 -3.4411 1.8905 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_13437772_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:52 Heat of formation + Delta-G solvation = -38.384876 kcal Electronic energy + Delta-G solvation = -28949.340832 eV Core-core repulsion = 24812.951664 eV Total energy + Delta-G solvation = -4136.389167 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.160 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82540 -41.09417 -40.45411 -38.40280 -37.82793 -36.21215 -35.30163 -34.56637 -32.58232 -29.62394 -28.61145 -28.37331 -28.30220 -26.72994 -25.68715 -24.66262 -23.71672 -22.75245 -21.50964 -20.84115 -19.93086 -19.35772 -19.08951 -18.25906 -17.70268 -17.36947 -17.30539 -16.76456 -16.45945 -16.32590 -15.91282 -15.70857 -15.61642 -15.38163 -15.33831 -14.78938 -14.43817 -14.17013 -14.01819 -13.91475 -13.56412 -13.44179 -13.43160 -13.34426 -13.14531 -13.02049 -12.99349 -12.91176 -12.86839 -12.49366 -12.46508 -12.37470 -12.14131 -11.88199 -11.64231 -11.48262 -11.39145 -11.12812 -11.01708 -10.67971 -10.41846 -10.20076 -10.00501 -8.59083 -4.79776 -0.00822 0.15789 0.73818 1.17846 1.27224 1.59822 1.76240 1.84589 1.90962 2.04899 3.08360 3.13058 3.39798 3.56062 3.72151 3.74022 3.76297 3.79252 3.88652 3.94152 4.09286 4.18678 4.34214 4.35640 4.40647 4.51384 4.60646 4.62020 4.67320 4.75946 4.78048 4.80433 4.81499 4.82088 4.85892 4.87211 4.90491 5.01152 5.06166 5.08220 5.10464 5.22417 5.26474 5.29038 5.33093 5.39453 5.60025 5.74309 6.35924 6.40179 6.61866 6.91109 7.34646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.256 4.256 3 C 0.087 3.913 4 C -0.042 4.042 5 O -0.546 6.546 6 Si 0.774 3.226 7 N -0.562 5.562 8 C 0.313 3.687 9 N -0.675 5.675 10 C 0.122 3.878 11 H 0.111 0.889 12 C -0.124 4.124 13 C -0.108 4.108 14 H 0.122 0.878 15 C 0.151 3.849 16 N -0.699 5.699 17 C 0.640 3.360 18 O -0.596 6.596 19 O -0.370 6.370 20 C 0.127 3.873 21 C -0.180 4.180 22 C -0.138 4.138 23 C -0.180 4.180 24 C -0.146 4.146 25 S 0.117 5.883 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.398 0.602 31 H -0.321 1.321 32 H -0.274 1.274 33 H 0.418 0.582 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.418 0.582 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 -3.519 2.320 4.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.379 4.379 3 C -0.042 4.042 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.680 3.320 7 N -0.290 5.290 8 C -0.058 4.058 9 N -0.315 5.315 10 C 0.017 3.983 11 H 0.129 0.871 12 C -0.162 4.162 13 C -0.127 4.127 14 H 0.140 0.860 15 C 0.028 3.972 16 N -0.359 5.359 17 C 0.394 3.606 18 O -0.487 6.487 19 O -0.285 6.285 20 C 0.091 3.909 21 C -0.237 4.237 22 C -0.195 4.195 23 C -0.237 4.237 24 C -0.186 4.186 25 S 0.365 5.635 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.249 0.751 31 H -0.250 1.250 32 H -0.201 1.201 33 H 0.257 0.743 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.476 -4.178 1.560 4.485 hybrid contribution -1.253 1.295 -0.262 1.821 sum -0.777 -2.883 1.297 3.255 Atomic orbital electron populations 1.20062 0.85855 1.02875 1.02386 1.25385 1.02227 0.93368 1.16896 1.19112 0.86868 0.95910 1.02310 1.24015 0.92099 0.96868 1.02473 1.86540 1.32838 1.36671 1.79516 0.93044 0.86685 0.73759 0.78559 1.65644 1.16954 1.17499 1.28911 1.23544 0.93048 0.91193 0.98038 1.44146 1.00841 1.07524 1.78955 1.22805 0.98722 0.78451 0.98357 0.87086 1.23305 0.95081 0.98559 0.99293 1.22576 0.93370 0.99975 0.96771 0.86039 1.21366 0.97693 0.87978 0.90124 1.44731 1.11774 1.36592 1.42797 1.18397 0.84196 0.79391 0.78644 1.90910 1.34239 1.53876 1.69716 1.86307 1.40768 1.49136 1.52256 1.22338 0.80147 0.96877 0.91540 1.22472 1.02934 0.97875 1.00435 1.21892 1.04287 0.95346 0.97966 1.22472 0.98903 1.02477 0.99858 1.23705 0.99089 0.99169 0.96598 1.83682 0.95844 1.09707 1.74222 0.91719 0.91557 0.89474 0.88085 0.75064 1.25009 1.20053 0.74285 0.88864 0.88145 0.91336 0.91611 0.74563 0.91966 0.89538 0.91792 0.91149 0.88387 0.91191 0.91772 0.89544 0.91906 0.89386 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.16 8.96 71.24 0.64 0.47 16 2 C -0.26 -1.61 6.50 24.58 0.16 -1.45 16 3 C 0.09 0.64 5.95 41.40 0.25 0.89 16 4 C -0.04 -0.13 2.82 71.23 0.20 0.07 16 5 O -0.55 -1.15 9.86 -148.98 -1.47 -2.61 16 6 Si 0.77 3.01 32.08 68.60 2.20 5.21 16 7 N -0.56 -4.03 8.95 -189.86 -1.70 -5.73 16 8 C 0.31 1.12 8.24 179.32 1.48 2.60 16 9 N -0.67 1.66 5.52 -327.89 -1.81 -0.15 16 10 C 0.12 -0.86 4.20 45.52 0.19 -0.67 16 11 H 0.11 -0.80 7.10 -2.39 -0.02 -0.82 16 12 C -0.12 1.20 7.39 31.12 0.23 1.43 16 13 C -0.11 1.07 3.75 -10.21 -0.04 1.03 16 14 H 0.12 -1.51 8.14 -2.39 -0.02 -1.53 16 15 C 0.15 -0.69 5.51 86.38 0.48 -0.21 16 16 N -0.70 1.34 5.56 -590.87 -3.29 -1.94 16 17 C 0.64 3.52 8.06 129.79 1.05 4.57 16 18 O -0.60 -6.65 11.88 19.81 0.24 -6.42 16 19 O -0.37 -1.72 9.94 -55.42 -0.55 -2.27 16 20 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 21 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 22 C -0.14 0.35 8.85 71.98 0.64 0.98 16 23 C -0.18 -0.50 8.37 71.98 0.60 0.11 16 24 C -0.15 1.20 7.45 31.18 0.23 1.43 16 25 S 0.12 0.29 21.71 -56.49 -1.23 -0.94 16 26 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.09 0.22 6.61 -2.39 -0.02 0.20 16 29 H 0.10 -0.10 7.96 -2.39 -0.02 -0.12 16 30 H 0.40 -2.52 8.74 -74.06 -0.65 -3.17 16 31 H -0.32 -4.42 7.11 99.48 0.71 -3.72 16 32 H -0.27 -1.39 7.11 99.48 0.71 -0.68 16 33 H 0.42 -1.69 8.84 -92.71 -0.82 -2.51 16 34 H 0.09 -0.98 8.14 -2.39 -0.02 -0.99 16 35 H 0.10 -1.00 8.07 -2.39 -0.02 -1.01 16 36 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.07 -0.16 7.85 -2.39 -0.02 -0.18 16 38 H 0.42 -2.74 8.58 -92.70 -0.80 -3.53 16 39 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 42 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 43 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.06 0.51 5.88 -2.38 -0.01 0.50 16 46 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 48 H 0.09 -0.55 7.90 -2.39 -0.02 -0.57 16 49 H 0.08 -0.70 8.14 -2.38 -0.02 -0.72 16 Total: 0.00 -20.25 404.53 -2.15 -22.40 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -1.24 Total: -19.17 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.69 Total: 11.63 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -6.79 Total: -7.82 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.78 Total: -11.30 kcal Atomic # 14 Polarization: 3.01 SS G_CDS: 2.20 Total: 5.21 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.23 Total: -0.94 kcal Total: -20.25 -2.15 -22.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_13437772_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.984 kcal (2) G-P(sol) polarization free energy of solvation -20.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds