Wall clock time and date at job start Tue Mar 9 2021 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00320 * 2 1 4 4 O 1.20824 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00308 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46518 * 59.99443 * 5 3 2 7 7 C 1.52992 * 109.47128 * 179.97438 * 5 3 2 8 8 C 1.53004 * 109.46811 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47132 * 299.99697 * 8 7 5 10 10 H 1.08997 * 109.47070 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.46954 * 300.00238 * 9 8 7 12 12 C 1.38612 * 119.99742 * 205.00196 * 11 9 8 13 13 N 1.29689 * 124.94822 * 180.02562 * 12 11 9 14 14 C 1.32112 * 116.86762 * 180.02562 * 13 12 11 15 15 C 1.50698 * 122.71244 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47520 * 150.00107 * 15 14 13 17 17 Si 1.86301 * 109.47296 * 29.99538 * 15 14 13 18 18 C 1.33334 * 114.57962 * 359.97438 * 14 13 12 19 19 C 1.50694 * 125.94973 * 179.74118 * 18 14 13 20 20 S 1.70962 * 124.94915 * 0.04772 * 12 11 9 21 21 C 1.52999 * 109.46952 * 59.99942 * 9 8 7 22 22 C 1.52998 * 109.46798 * 300.00169 * 5 3 2 23 23 H 1.08998 * 109.47282 * 59.99776 * 1 2 3 24 24 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46864 * 300.00213 * 1 2 3 26 26 H 1.08995 * 109.47791 * 59.99954 * 7 5 3 27 27 H 1.09004 * 109.47330 * 299.99200 * 7 5 3 28 28 H 1.09002 * 109.46833 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47379 * 59.99856 * 8 7 5 30 30 H 0.97002 * 119.99812 * 24.99540 * 11 9 8 31 31 H 1.09002 * 109.46858 * 270.00107 * 15 14 13 32 32 H 0.96696 * 113.99477 * 299.99688 * 16 15 14 33 33 H 1.48502 * 109.99667 * 58.68470 * 17 15 14 34 34 H 1.48502 * 110.00208 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.47784 * 90.00080 * 19 18 14 36 36 H 1.09003 * 109.47064 * 209.99665 * 19 18 14 37 37 H 1.08994 * 109.47528 * 329.99331 * 19 18 14 38 38 H 1.09010 * 109.46905 * 60.00253 * 21 9 8 39 39 H 1.08995 * 109.47159 * 179.97438 * 21 9 8 40 40 H 1.09003 * 109.46994 * 299.98983 * 22 5 3 41 41 H 1.09000 * 109.48011 * 59.99784 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9556 0.7808 -0.8908 7 6 4.0001 2.7419 -0.0011 8 6 5.5281 2.8219 -0.0023 9 6 6.0761 2.1285 1.2466 10 1 7.1646 2.1859 1.2459 11 7 5.5532 2.7929 2.4431 12 6 6.2548 2.7240 3.6365 13 7 5.8819 3.2737 4.7503 14 6 6.6751 3.1067 5.7936 15 6 6.3694 3.6870 7.1503 16 8 6.9227 2.8455 8.1641 17 14 4.5235 3.7998 7.3760 18 6 7.7675 2.3821 5.5493 19 6 8.8432 2.0396 6.5474 20 16 7.7381 1.9023 3.8545 21 6 5.6422 0.6614 1.2472 22 6 4.1138 0.5809 1.2483 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.6108 3.2364 0.8888 27 1 3.6102 3.2359 -0.8911 28 1 5.8371 3.8672 -0.0023 29 1 5.9171 2.3277 -0.8925 30 1 4.7161 3.2810 2.4000 31 1 6.8062 4.6828 7.2263 32 1 6.5786 1.9419 8.1562 33 1 3.9124 2.4529 7.2429 34 1 4.2089 4.3712 8.7100 35 1 8.5930 1.1021 7.0441 36 1 9.7974 1.9337 6.0312 37 1 8.9177 2.8350 7.2889 38 1 6.0312 0.1671 0.3569 39 1 6.0329 0.1673 2.1366 40 1 3.7245 1.0750 2.1385 41 1 3.8048 -0.4643 1.2483 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14474852_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:30 Heat of formation + Delta-G solvation = -74.603610 kcal Electronic energy + Delta-G solvation = -24479.578414 eV Core-core repulsion = 20873.657453 eV Total energy + Delta-G solvation = -3605.920962 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.87044 -41.02743 -40.06241 -37.83387 -37.46643 -35.63500 -32.95778 -32.12702 -31.30783 -29.11445 -28.56340 -25.64596 -24.98032 -24.45970 -23.87708 -21.97468 -20.81993 -20.67490 -18.85744 -18.58927 -17.99668 -17.83567 -17.50623 -17.38007 -16.70534 -16.34930 -16.12249 -15.61188 -15.42757 -15.11644 -14.96242 -14.30633 -14.19861 -14.14223 -13.97083 -13.73460 -13.72949 -13.50507 -13.37042 -13.25360 -13.03724 -12.74409 -12.48754 -12.27539 -12.23790 -11.86160 -11.80068 -11.75871 -11.61815 -11.27976 -10.97665 -10.55236 -10.42474 -9.96784 -8.59082 -4.63875 0.06378 0.21207 0.82305 1.16227 1.41808 1.65697 1.85171 1.90043 1.99786 2.14877 3.28891 3.31125 3.34650 3.49185 3.57132 3.72400 3.79887 3.93530 4.04925 4.12691 4.15117 4.19030 4.20133 4.21847 4.37653 4.42021 4.52983 4.57674 4.59369 4.63110 4.78053 4.80741 4.85671 4.90110 4.93575 5.01467 5.07110 5.15407 5.32653 5.37791 5.62026 6.27136 6.41071 6.70573 6.99486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.504 6.504 5 C -0.079 4.079 6 H 0.113 0.887 7 C -0.107 4.107 8 C -0.123 4.123 9 C 0.148 3.852 10 H 0.087 0.913 11 N -0.688 5.688 12 C 0.323 3.677 13 N -0.540 5.540 14 C 0.070 3.930 15 C -0.042 4.042 16 O -0.526 6.526 17 Si 0.720 3.280 18 C -0.244 4.244 19 C -0.065 4.065 20 S 0.097 5.903 21 C -0.137 4.137 22 C -0.110 4.110 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.413 0.587 31 H 0.124 0.876 32 H 0.375 0.625 33 H -0.268 1.268 34 H -0.261 1.261 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.576 -4.240 5.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.305 3.695 4 O -0.391 6.391 5 C -0.099 4.099 6 H 0.131 0.869 7 C -0.145 4.145 8 C -0.161 4.161 9 C 0.043 3.957 10 H 0.105 0.895 11 N -0.330 5.330 12 C -0.048 4.048 13 N -0.267 5.267 14 C -0.060 4.060 15 C -0.154 4.154 16 O -0.331 6.331 17 Si 0.620 3.380 18 C -0.366 4.366 19 C -0.124 4.124 20 S 0.346 5.654 21 C -0.176 4.176 22 C -0.147 4.147 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.252 0.748 31 H 0.142 0.858 32 H 0.223 0.777 33 H -0.193 1.193 34 H -0.186 1.186 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.088 -2.370 -4.439 5.149 hybrid contribution -0.328 -0.480 0.862 1.040 sum 0.760 -2.851 -3.577 4.637 Atomic orbital electron populations 1.23315 0.75926 1.03986 1.02727 1.86499 1.23731 1.33367 1.83884 1.23792 0.92032 0.81443 0.72230 1.90696 1.67192 1.36345 1.44846 1.21145 0.87058 0.99387 1.02260 0.86914 1.21462 0.95261 0.93518 1.04264 1.21822 0.95248 1.02196 0.96865 1.21183 0.98608 0.92032 0.83878 0.89520 1.44159 1.26028 1.58314 1.04473 1.23295 0.94749 0.96498 0.90305 1.65730 1.34108 1.28842 0.97987 1.20080 0.91174 0.99370 0.95423 1.24445 1.12675 0.95916 0.82378 1.86605 1.67522 1.26036 1.52965 0.93612 0.74722 0.86439 0.83207 1.25109 1.03562 1.11088 0.96880 1.20192 0.93780 1.02706 0.95764 1.83941 1.19805 1.54145 1.07512 1.22083 0.95704 0.96021 1.03747 1.21491 0.95613 1.01524 0.96101 0.91730 0.87875 0.91761 0.90811 0.90003 0.89876 0.89268 0.74767 0.85821 0.77680 1.19284 1.18636 0.91366 0.92184 0.89079 0.89689 0.90643 0.91027 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.32 10.47 -39.25 -0.41 -0.73 16 3 C 0.46 0.53 7.26 36.01 0.26 0.79 16 4 O -0.50 -2.06 15.73 -18.75 -0.29 -2.35 16 5 C -0.08 0.17 2.63 -91.77 -0.24 -0.07 16 6 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 7 C -0.11 0.27 4.32 -26.73 -0.12 0.15 16 8 C -0.12 0.50 5.61 -26.73 -0.15 0.35 16 9 C 0.15 -0.47 2.73 -67.93 -0.19 -0.65 16 10 H 0.09 -0.28 7.25 -51.93 -0.38 -0.66 16 11 N -0.69 0.79 4.39 -55.78 -0.24 0.54 16 12 C 0.32 0.37 8.22 -87.68 -0.72 -0.35 16 13 N -0.54 -1.44 8.95 -11.36 -0.10 -1.54 16 14 C 0.07 0.17 5.92 -84.19 -0.50 -0.33 16 15 C -0.04 -0.06 2.82 36.00 0.10 0.04 16 16 O -0.53 -0.67 9.91 -35.23 -0.35 -1.01 16 17 Si 0.72 1.18 32.08 -169.99 -5.45 -4.27 16 18 C -0.24 -0.42 6.50 -36.02 -0.23 -0.65 16 19 C -0.07 -0.02 8.94 36.00 0.32 0.30 16 20 S 0.10 0.04 21.69 -107.50 -2.33 -2.29 16 21 C -0.14 0.46 5.62 -26.71 -0.15 0.31 16 22 C -0.11 0.25 4.98 -26.71 -0.13 0.12 16 23 H 0.06 -0.04 8.13 -51.93 -0.42 -0.47 16 24 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 25 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.07 -0.11 6.46 -51.93 -0.34 -0.44 16 27 H 0.08 -0.15 8.10 -51.93 -0.42 -0.57 16 28 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 29 H 0.09 -0.47 8.14 -51.93 -0.42 -0.90 16 30 H 0.41 -0.49 6.99 -40.82 -0.29 -0.77 16 31 H 0.12 0.08 7.96 -51.93 -0.41 -0.33 16 32 H 0.38 -0.38 8.68 45.56 0.40 0.01 16 33 H -0.27 -1.18 7.11 56.52 0.40 -0.78 16 34 H -0.26 -1.01 7.11 56.52 0.40 -0.61 16 35 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 37 H 0.09 0.08 6.63 -51.93 -0.34 -0.27 16 38 H 0.08 -0.40 8.14 -51.92 -0.42 -0.82 16 39 H 0.07 -0.18 8.04 -51.93 -0.42 -0.60 16 40 H 0.07 -0.06 7.61 -51.93 -0.40 -0.46 16 41 H 0.08 -0.17 8.11 -51.93 -0.42 -0.60 16 LS Contribution 342.63 15.07 5.16 5.16 Total: 0.00 -6.64 342.63 -10.72 -17.36 By element: Atomic # 1 Polarization: -5.90 SS G_CDS: -6.02 Total: -11.92 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.68 Total: 1.05 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.35 Total: -1.00 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -1.05 Total: -4.10 kcal Atomic # 14 Polarization: 1.18 SS G_CDS: -5.45 Total: -4.27 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.33 Total: -2.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -6.64 -10.72 -17.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14474852_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.244 kcal (2) G-P(sol) polarization free energy of solvation -6.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds