Wall clock time and date at job start Tue Mar 9 2021 13:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00320 * 2 1 4 4 O 1.20824 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00308 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46518 * 59.99443 * 5 3 2 7 7 C 1.52992 * 109.47128 * 179.97438 * 5 3 2 8 8 C 1.53004 * 109.46811 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47132 * 299.99697 * 8 7 5 10 10 H 1.08997 * 109.47070 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.46954 * 300.00238 * 9 8 7 12 12 C 1.38612 * 119.99742 * 205.00196 * 11 9 8 13 13 N 1.29689 * 124.94822 * 180.02562 * 12 11 9 14 14 C 1.32112 * 116.86762 * 180.02562 * 13 12 11 15 15 C 1.50698 * 122.71244 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47520 * 150.00107 * 15 14 13 17 17 Si 1.86301 * 109.47296 * 29.99538 * 15 14 13 18 18 C 1.33334 * 114.57962 * 359.97438 * 14 13 12 19 19 C 1.50694 * 125.94973 * 179.74118 * 18 14 13 20 20 S 1.70962 * 124.94915 * 0.04772 * 12 11 9 21 21 C 1.52999 * 109.46952 * 59.99942 * 9 8 7 22 22 C 1.52998 * 109.46798 * 300.00169 * 5 3 2 23 23 H 1.08998 * 109.47282 * 59.99776 * 1 2 3 24 24 H 1.08997 * 109.47422 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46864 * 300.00213 * 1 2 3 26 26 H 1.08995 * 109.47791 * 59.99954 * 7 5 3 27 27 H 1.09004 * 109.47330 * 299.99200 * 7 5 3 28 28 H 1.09002 * 109.46833 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.47379 * 59.99856 * 8 7 5 30 30 H 0.97002 * 119.99812 * 24.99540 * 11 9 8 31 31 H 1.09002 * 109.46858 * 270.00107 * 15 14 13 32 32 H 0.96696 * 113.99477 * 299.99688 * 16 15 14 33 33 H 1.48502 * 109.99667 * 58.68470 * 17 15 14 34 34 H 1.48502 * 110.00208 * 180.02562 * 17 15 14 35 35 H 1.08998 * 109.47784 * 90.00080 * 19 18 14 36 36 H 1.09003 * 109.47064 * 209.99665 * 19 18 14 37 37 H 1.08994 * 109.47528 * 329.99331 * 19 18 14 38 38 H 1.09010 * 109.46905 * 60.00253 * 21 9 8 39 39 H 1.08995 * 109.47159 * 179.97438 * 21 9 8 40 40 H 1.09003 * 109.46994 * 299.98983 * 22 5 3 41 41 H 1.09000 * 109.48011 * 59.99784 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9556 0.7808 -0.8908 7 6 4.0001 2.7419 -0.0011 8 6 5.5281 2.8219 -0.0023 9 6 6.0761 2.1285 1.2466 10 1 7.1646 2.1859 1.2459 11 7 5.5532 2.7929 2.4431 12 6 6.2548 2.7240 3.6365 13 7 5.8819 3.2737 4.7503 14 6 6.6751 3.1067 5.7936 15 6 6.3694 3.6870 7.1503 16 8 6.9227 2.8455 8.1641 17 14 4.5235 3.7998 7.3760 18 6 7.7675 2.3821 5.5493 19 6 8.8432 2.0396 6.5474 20 16 7.7381 1.9023 3.8545 21 6 5.6422 0.6614 1.2472 22 6 4.1138 0.5809 1.2483 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.6108 3.2364 0.8888 27 1 3.6102 3.2359 -0.8911 28 1 5.8371 3.8672 -0.0023 29 1 5.9171 2.3277 -0.8925 30 1 4.7161 3.2810 2.4000 31 1 6.8062 4.6828 7.2263 32 1 6.5786 1.9419 8.1562 33 1 3.9124 2.4529 7.2429 34 1 4.2089 4.3712 8.7100 35 1 8.5930 1.1021 7.0441 36 1 9.7974 1.9337 6.0312 37 1 8.9177 2.8350 7.2889 38 1 6.0312 0.1671 0.3569 39 1 6.0329 0.1673 2.1366 40 1 3.7245 1.0750 2.1385 41 1 3.8048 -0.4643 1.2483 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14474852_15704122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:30 Heat of formation + Delta-G solvation = -69.786125 kcal Electronic energy + Delta-G solvation = -24479.369512 eV Core-core repulsion = 20873.657453 eV Total energy + Delta-G solvation = -3605.712060 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.88033 -41.08395 -39.96706 -37.90200 -37.56722 -35.59108 -32.94451 -31.90631 -31.21934 -29.15660 -28.52236 -25.68209 -24.90438 -24.44594 -23.68188 -21.93515 -20.75163 -20.64450 -18.86649 -18.61657 -18.05323 -17.85119 -17.48852 -17.41680 -16.74475 -16.25487 -16.02008 -15.72840 -15.33879 -15.01232 -14.91455 -14.32796 -14.30097 -14.09418 -13.89510 -13.78365 -13.65523 -13.38317 -13.26725 -13.14883 -12.98334 -12.80036 -12.49528 -12.23395 -12.13484 -11.98150 -11.88145 -11.62926 -11.52092 -11.23096 -10.91962 -10.62399 -10.49398 -10.01129 -8.59262 -4.81335 0.00481 0.18363 0.76280 1.09135 1.28135 1.63312 1.70761 1.81257 1.98165 2.01433 3.28242 3.44990 3.49748 3.56654 3.67921 3.91717 4.00942 4.08818 4.17234 4.22996 4.24917 4.28003 4.34190 4.35742 4.43331 4.54412 4.63543 4.68196 4.76694 4.80027 4.81569 4.91954 5.06217 5.09471 5.10869 5.13028 5.23512 5.29343 5.32232 5.36690 5.72562 6.29632 6.42452 6.64229 6.95658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.540 6.540 5 C -0.073 4.073 6 H 0.138 0.862 7 C -0.105 4.105 8 C -0.114 4.114 9 C 0.145 3.855 10 H 0.095 0.905 11 N -0.683 5.683 12 C 0.314 3.686 13 N -0.565 5.565 14 C 0.057 3.943 15 C -0.038 4.038 16 O -0.531 6.531 17 Si 0.773 3.227 18 C -0.260 4.260 19 C -0.062 4.062 20 S 0.125 5.875 21 C -0.132 4.132 22 C -0.104 4.104 23 H 0.061 0.939 24 H 0.128 0.872 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.411 0.589 31 H 0.132 0.868 32 H 0.384 0.616 33 H -0.307 1.307 34 H -0.291 1.291 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -3.310 -5.475 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.303 3.697 4 O -0.430 6.430 5 C -0.092 4.092 6 H 0.156 0.844 7 C -0.143 4.143 8 C -0.151 4.151 9 C 0.041 3.959 10 H 0.112 0.888 11 N -0.324 5.324 12 C -0.058 4.058 13 N -0.293 5.293 14 C -0.074 4.074 15 C -0.151 4.151 16 O -0.338 6.338 17 Si 0.679 3.321 18 C -0.383 4.383 19 C -0.121 4.121 20 S 0.374 5.626 21 C -0.170 4.170 22 C -0.142 4.142 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.130 0.870 30 H 0.251 0.749 31 H 0.150 0.850 32 H 0.233 0.767 33 H -0.234 1.234 34 H -0.219 1.219 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.407 -3.117 -5.703 6.930 hybrid contribution -0.811 -0.320 1.227 1.505 sum 1.596 -3.437 -4.476 5.865 Atomic orbital electron populations 1.23491 0.75294 1.05493 1.02295 1.86504 1.24542 1.33327 1.83592 1.24507 0.93279 0.80932 0.70956 1.90676 1.68220 1.37422 1.46682 1.21252 0.84737 0.99894 1.03318 0.84445 1.21429 0.96506 0.93087 1.03255 1.21794 0.93676 1.02514 0.97149 1.21380 0.99015 0.92151 0.83360 0.88760 1.44376 1.25727 1.57889 1.04397 1.23556 0.95321 0.96316 0.90575 1.65725 1.34883 1.30069 0.98616 1.20180 0.91628 0.99928 0.95618 1.24401 1.11926 0.96385 0.82359 1.86582 1.67565 1.26745 1.52928 0.92938 0.74296 0.83692 0.81148 1.25365 1.03764 1.11130 0.98019 1.20182 0.93671 1.02789 0.95437 1.83731 1.18880 1.53565 1.06412 1.22075 0.94580 0.95859 1.04527 1.21423 0.96467 1.01167 0.95111 0.91974 0.85433 0.92439 0.92340 0.90620 0.89764 0.86991 0.74927 0.85043 0.76655 1.23431 1.21899 0.90606 0.91570 0.89722 0.87310 0.91424 0.92974 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.79 10.47 -51.39 -0.54 -1.32 16 3 C 0.46 1.36 7.26 71.24 0.52 1.88 16 4 O -0.54 -5.23 15.73 21.97 0.35 -4.89 16 5 C -0.07 0.34 2.63 -11.54 -0.03 0.31 16 6 H 0.14 -1.30 8.14 -2.39 -0.02 -1.32 16 7 C -0.10 0.53 4.32 30.59 0.13 0.66 16 8 C -0.11 1.09 5.61 30.60 0.17 1.26 16 9 C 0.15 -1.08 2.73 44.99 0.12 -0.96 16 10 H 0.09 -0.79 7.25 -2.39 -0.02 -0.80 16 11 N -0.68 1.52 4.39 -330.40 -1.45 0.07 16 12 C 0.31 0.78 8.22 179.32 1.47 2.25 16 13 N -0.56 -3.42 8.95 -189.86 -1.70 -5.11 16 14 C 0.06 0.30 5.92 41.41 0.25 0.54 16 15 C -0.04 -0.13 2.82 71.24 0.20 0.07 16 16 O -0.53 -1.58 9.91 -148.98 -1.48 -3.06 16 17 Si 0.77 3.73 32.08 68.60 2.20 5.93 16 18 C -0.26 -0.89 6.50 24.57 0.16 -0.73 16 19 C -0.06 -0.02 8.94 71.23 0.64 0.62 16 20 S 0.13 0.05 21.69 -56.49 -1.23 -1.18 16 21 C -0.13 1.06 5.62 30.61 0.17 1.24 16 22 C -0.10 0.51 4.98 30.61 0.15 0.67 16 23 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 24 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 25 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 26 H 0.06 -0.11 6.46 -2.39 -0.02 -0.12 16 27 H 0.08 -0.26 8.10 -2.39 -0.02 -0.28 16 28 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.11 -1.51 8.14 -2.39 -0.02 -1.53 16 30 H 0.41 -0.65 6.99 -92.71 -0.65 -1.29 16 31 H 0.13 0.22 7.96 -2.39 -0.02 0.20 16 32 H 0.38 -0.56 8.68 -74.06 -0.64 -1.20 16 33 H -0.31 -3.44 7.11 99.48 0.71 -2.73 16 34 H -0.29 -2.81 7.11 99.48 0.71 -2.10 16 35 H 0.08 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.08 0.15 6.63 -2.39 -0.02 0.13 16 38 H 0.11 -1.34 8.14 -2.38 -0.02 -1.36 16 39 H 0.07 -0.39 8.04 -2.39 -0.02 -0.41 16 40 H 0.05 -0.04 7.61 -2.39 -0.02 -0.06 16 41 H 0.08 -0.39 8.11 -2.39 -0.02 -0.41 16 Total: 0.00 -16.85 342.63 1.11 -15.74 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -0.20 Total: -15.16 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.15 Total: 8.98 kcal Atomic # 7 Polarization: -1.90 SS G_CDS: -3.15 Total: -5.04 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.67 Total: -9.27 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.20 Total: 5.93 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -1.23 Total: -1.18 kcal Total: -16.85 1.11 -15.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14474852_15704122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.047 kcal (2) G-P(sol) polarization free energy of solvation -16.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds