Wall clock time and date at job start Tue Mar 9 2021 13:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00487 * 2 1 4 4 O 1.20828 * 119.99514 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00533 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47624 * 59.99295 * 5 3 2 7 7 C 1.53002 * 109.47531 * 179.97438 * 5 3 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 12 12 C 1.38406 * 120.00377 * 154.99804 * 11 9 8 13 13 N 1.32503 * 119.21458 * 359.73598 * 12 11 9 14 14 C 1.32272 * 120.74052 * 179.71851 * 13 12 11 15 15 C 1.38610 * 119.19452 * 0.54271 * 14 13 12 16 16 C 1.50699 * 120.71772 * 179.75535 * 15 14 13 17 17 O 1.42900 * 109.47009 * 119.97732 * 16 15 14 18 18 Si 1.86304 * 109.47281 * 359.97438 * 16 15 14 19 19 C 1.38603 * 118.55750 * 359.73239 * 15 14 13 20 20 N 1.32270 * 119.20128 * 359.97438 * 19 15 14 21 21 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 22 22 C 1.52997 * 109.46989 * 299.99591 * 5 3 2 23 23 H 1.08999 * 109.47207 * 60.00254 * 1 2 3 24 24 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46950 * 300.00619 * 1 2 3 26 26 H 1.08992 * 109.47063 * 59.99724 * 7 5 3 27 27 H 1.09004 * 109.46733 * 299.99437 * 7 5 3 28 28 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 29 29 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99491 * 335.00093 * 11 9 8 31 31 H 1.07994 * 120.40259 * 180.25079 * 14 13 12 32 32 H 1.09000 * 109.47228 * 239.97336 * 16 15 14 33 33 H 0.96707 * 113.99944 * 179.97438 * 17 16 15 34 34 H 1.48501 * 109.99809 * 60.00244 * 18 16 15 35 35 H 1.48501 * 109.99557 * 181.31871 * 18 16 15 36 36 H 1.08000 * 120.39884 * 179.97438 * 19 15 14 37 37 H 1.09000 * 109.47486 * 180.02562 * 21 9 8 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 9 8 39 39 H 1.09002 * 109.47153 * 299.99998 * 22 5 3 40 40 H 1.09001 * 109.47289 * 60.00082 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8907 7 6 4.0002 2.7420 -0.0011 8 6 5.5281 2.8220 -0.0023 9 6 6.0761 2.1286 1.2466 10 1 5.6870 2.6229 2.1368 11 7 7.5391 2.2057 1.2458 12 6 8.2363 2.1379 2.4394 13 7 7.5647 2.0085 3.5743 14 6 8.2008 1.9351 4.7317 15 6 9.5849 2.0066 4.7483 16 6 10.3441 1.9322 6.0480 17 8 11.2256 0.8079 6.0210 18 14 9.1423 1.7454 7.4593 19 6 10.2556 2.1476 3.5436 20 7 9.5592 2.2088 2.4207 21 6 5.6422 0.6615 1.2472 22 6 4.1138 0.5811 1.2483 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.6108 3.2363 0.8888 27 1 3.6102 3.2358 -0.8912 28 1 5.9171 2.3277 -0.8926 29 1 5.8372 3.8673 -0.0023 30 1 8.0190 2.3044 0.4086 31 1 7.6481 1.8257 5.6531 32 1 10.9239 2.8453 6.1829 33 1 11.7479 0.6981 6.8274 34 1 8.3458 0.5040 7.2871 35 1 9.8768 1.7028 8.7493 36 1 11.3337 2.2067 3.5219 37 1 6.0322 0.1676 2.1372 38 1 6.0313 0.1672 0.3570 39 1 3.7244 1.0751 2.1385 40 1 3.8048 -0.4642 1.2483 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_14475162_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:52 Heat of formation + Delta-G solvation = -61.848486 kcal Electronic energy + Delta-G solvation = -23518.348801 eV Core-core repulsion = 19913.940405 eV Total energy + Delta-G solvation = -3604.408396 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06055 -41.64758 -39.69595 -38.09646 -37.44358 -36.11221 -34.63163 -32.99886 -31.92453 -30.75980 -28.55938 -26.60387 -25.82742 -24.41381 -23.83800 -22.89064 -21.83096 -20.97583 -19.28019 -18.76093 -18.51601 -18.39204 -17.74407 -17.38032 -16.66095 -16.50269 -16.12680 -15.73841 -15.56844 -15.27159 -15.14627 -14.94607 -14.54854 -14.15315 -14.01299 -13.96460 -13.76002 -13.35414 -13.31854 -13.01931 -12.63095 -12.48293 -12.30184 -12.21303 -11.90137 -11.76514 -11.74698 -11.65392 -11.46454 -11.22029 -11.07831 -10.67994 -9.94743 -9.04379 -5.04258 0.13360 0.23744 1.21012 1.23124 1.52366 1.70384 1.86397 1.89432 2.83059 3.18361 3.30856 3.46184 3.52167 3.60095 3.68008 3.82069 3.87811 3.89121 4.02817 4.14644 4.17080 4.19969 4.24769 4.26307 4.29296 4.35703 4.47687 4.58190 4.62214 4.69969 4.84394 4.87741 4.95436 5.03160 5.05075 5.16889 5.21820 5.35655 5.44297 5.83866 6.07051 6.36637 6.48105 6.77422 7.36155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.505 6.505 5 C -0.081 4.081 6 H 0.111 0.889 7 C -0.099 4.099 8 C -0.127 4.127 9 C 0.158 3.842 10 H 0.096 0.904 11 N -0.692 5.692 12 C 0.568 3.432 13 N -0.560 5.560 14 C 0.201 3.799 15 C -0.247 4.247 16 C -0.054 4.054 17 O -0.538 6.538 18 Si 0.674 3.326 19 C 0.224 3.776 20 N -0.570 5.570 21 C -0.127 4.127 22 C -0.107 4.107 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.414 0.586 31 H 0.166 0.834 32 H 0.078 0.922 33 H 0.381 0.619 34 H -0.252 1.252 35 H -0.257 1.257 36 H 0.169 0.831 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 0.551 1.304 1.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.306 3.694 4 O -0.392 6.392 5 C -0.100 4.100 6 H 0.129 0.871 7 C -0.137 4.137 8 C -0.165 4.165 9 C 0.052 3.948 10 H 0.114 0.886 11 N -0.328 5.328 12 C 0.211 3.789 13 N -0.282 5.282 14 C 0.034 3.966 15 C -0.255 4.255 16 C -0.165 4.165 17 O -0.345 6.345 18 Si 0.575 3.425 19 C 0.056 3.944 20 N -0.291 5.291 21 C -0.166 4.166 22 C -0.145 4.145 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.251 0.749 31 H 0.183 0.817 32 H 0.096 0.904 33 H 0.230 0.770 34 H -0.177 1.177 35 H -0.182 1.182 36 H 0.186 0.814 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.186 0.333 0.487 1.325 hybrid contribution 1.567 -0.619 0.638 1.802 sum 0.381 -0.286 1.125 1.222 Atomic orbital electron populations 1.23308 0.76015 1.03942 1.02695 1.86505 1.23664 1.33410 1.83902 1.23802 0.92022 0.81388 0.72141 1.90690 1.67204 1.36373 1.44936 1.21182 0.86931 0.99571 1.02354 0.87091 1.21379 0.94448 0.93396 1.04490 1.21828 0.95349 1.01746 0.97550 1.21060 0.77831 0.96056 0.99805 0.88556 1.44247 1.06069 1.77916 1.04538 1.19387 0.85241 0.87500 0.86725 1.67942 1.40370 1.22151 0.97727 1.22718 0.90670 0.87866 0.95394 1.20615 0.95514 1.12772 0.96634 1.24398 0.98702 0.91166 1.02194 1.86585 1.56752 1.48346 1.42854 0.95319 0.82737 0.88376 0.76093 1.22783 1.00268 0.85678 0.85670 1.67980 1.06727 1.22547 1.31887 1.21961 0.94737 0.96710 1.03232 1.21499 0.95454 1.01501 0.96040 0.91788 0.87910 0.91755 0.90333 0.90174 0.90857 0.90272 0.74857 0.81692 0.90390 0.77049 1.17670 1.18196 0.81428 0.90633 0.91363 0.90793 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.05 16 2 O -0.36 -0.49 10.47 -39.25 -0.41 -0.91 16 3 C 0.46 0.83 7.25 36.00 0.26 1.09 16 4 O -0.50 -2.35 15.73 -18.75 -0.29 -2.65 16 5 C -0.08 0.08 2.63 -91.78 -0.24 -0.16 16 6 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 7 C -0.10 0.12 4.49 -26.73 -0.12 0.00 16 8 C -0.13 0.29 5.39 -26.73 -0.14 0.14 16 9 C 0.16 -0.14 2.45 -67.93 -0.17 -0.31 16 10 H 0.10 0.03 7.50 -51.93 -0.39 -0.36 16 11 N -0.69 -0.21 5.22 -55.79 -0.29 -0.50 16 12 C 0.57 1.51 8.40 -322.80 -2.71 -1.20 16 13 N -0.56 -1.38 9.20 -13.93 -0.13 -1.51 16 14 C 0.20 0.21 9.92 -17.22 -0.17 0.04 16 15 C -0.25 -0.22 5.43 -104.35 -0.57 -0.78 16 16 C -0.05 0.06 2.84 36.01 0.10 0.16 16 17 O -0.54 -0.06 12.76 -35.23 -0.45 -0.51 16 18 Si 0.67 -1.22 29.87 -169.99 -5.08 -6.29 16 19 C 0.22 0.39 10.92 -17.23 -0.19 0.21 16 20 N -0.57 -1.81 10.46 -13.93 -0.15 -1.95 16 21 C -0.13 0.13 5.51 -26.70 -0.15 -0.02 16 22 C -0.11 0.14 5.14 -26.70 -0.14 0.00 16 23 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 24 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 25 H 0.06 -0.02 8.13 -51.93 -0.42 -0.45 16 26 H 0.08 -0.02 8.10 -51.93 -0.42 -0.44 16 27 H 0.08 -0.06 8.10 -51.93 -0.42 -0.48 16 28 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 29 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.41 -0.35 8.72 -40.82 -0.36 -0.71 16 31 H 0.17 -0.24 5.04 -52.49 -0.26 -0.51 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.38 -1.45 8.74 45.56 0.40 -1.05 16 34 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 35 H -0.26 -0.07 7.11 56.52 0.40 0.34 16 36 H 0.17 -0.03 8.06 -52.49 -0.42 -0.45 16 37 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 40 H 0.08 -0.11 8.11 -51.93 -0.42 -0.53 16 LS Contribution 332.46 15.07 5.01 5.01 Total: 0.00 -8.09 332.46 -10.66 -18.76 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: -5.71 Total: -9.67 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.16 Total: 0.22 kcal Atomic # 7 Polarization: -3.40 SS G_CDS: -0.57 Total: -3.96 kcal Atomic # 8 Polarization: -2.91 SS G_CDS: -1.16 Total: -4.06 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.08 Total: -6.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -8.09 -10.66 -18.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14475162_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.092 kcal (2) G-P(sol) polarization free energy of solvation -8.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds