Wall clock time and date at job start Tue Mar 9 2021 13:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34226 * 117.00487 * 2 1 4 4 O 1.20828 * 119.99514 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00533 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.47624 * 59.99295 * 5 3 2 7 7 C 1.53002 * 109.47531 * 179.97438 * 5 3 2 8 8 C 1.53000 * 109.47233 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 5 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 N 1.46500 * 109.47473 * 180.02562 * 9 8 7 12 12 C 1.38406 * 120.00377 * 154.99804 * 11 9 8 13 13 N 1.32503 * 119.21458 * 359.73598 * 12 11 9 14 14 C 1.32272 * 120.74052 * 179.71851 * 13 12 11 15 15 C 1.38610 * 119.19452 * 0.54271 * 14 13 12 16 16 C 1.50699 * 120.71772 * 179.75535 * 15 14 13 17 17 O 1.42900 * 109.47009 * 119.97732 * 16 15 14 18 18 Si 1.86304 * 109.47281 * 359.97438 * 16 15 14 19 19 C 1.38603 * 118.55750 * 359.73239 * 15 14 13 20 20 N 1.32270 * 119.20128 * 359.97438 * 19 15 14 21 21 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 22 22 C 1.52997 * 109.46989 * 299.99591 * 5 3 2 23 23 H 1.08999 * 109.47207 * 60.00254 * 1 2 3 24 24 H 1.08996 * 109.47685 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46950 * 300.00619 * 1 2 3 26 26 H 1.08992 * 109.47063 * 59.99724 * 7 5 3 27 27 H 1.09004 * 109.46733 * 299.99437 * 7 5 3 28 28 H 1.09002 * 109.47398 * 59.99826 * 8 7 5 29 29 H 1.09001 * 109.47194 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99491 * 335.00093 * 11 9 8 31 31 H 1.07994 * 120.40259 * 180.25079 * 14 13 12 32 32 H 1.09000 * 109.47228 * 239.97336 * 16 15 14 33 33 H 0.96707 * 113.99944 * 179.97438 * 17 16 15 34 34 H 1.48501 * 109.99809 * 60.00244 * 18 16 15 35 35 H 1.48501 * 109.99557 * 181.31871 * 18 16 15 36 36 H 1.08000 * 120.39884 * 179.97438 * 19 15 14 37 37 H 1.09000 * 109.47486 * 180.02562 * 21 9 8 38 38 H 1.09002 * 109.46716 * 60.00091 * 21 9 8 39 39 H 1.09002 * 109.47153 * 299.99998 * 22 5 3 40 40 H 1.09001 * 109.47289 * 60.00082 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9558 0.7808 -0.8907 7 6 4.0002 2.7420 -0.0011 8 6 5.5281 2.8220 -0.0023 9 6 6.0761 2.1286 1.2466 10 1 5.6870 2.6229 2.1368 11 7 7.5391 2.2057 1.2458 12 6 8.2363 2.1379 2.4394 13 7 7.5647 2.0085 3.5743 14 6 8.2008 1.9351 4.7317 15 6 9.5849 2.0066 4.7483 16 6 10.3441 1.9322 6.0480 17 8 11.2256 0.8079 6.0210 18 14 9.1423 1.7454 7.4593 19 6 10.2556 2.1476 3.5436 20 7 9.5592 2.2088 2.4207 21 6 5.6422 0.6615 1.2472 22 6 4.1138 0.5811 1.2483 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.6108 3.2363 0.8888 27 1 3.6102 3.2358 -0.8912 28 1 5.9171 2.3277 -0.8926 29 1 5.8372 3.8673 -0.0023 30 1 8.0190 2.3044 0.4086 31 1 7.6481 1.8257 5.6531 32 1 10.9239 2.8453 6.1829 33 1 11.7479 0.6981 6.8274 34 1 8.3458 0.5040 7.2871 35 1 9.8768 1.7028 8.7493 36 1 11.3337 2.2067 3.5219 37 1 6.0322 0.1676 2.1372 38 1 6.0313 0.1672 0.3570 39 1 3.7244 1.0751 2.1385 40 1 3.8048 -0.4642 1.2483 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_14475162_12175864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:52 Heat of formation + Delta-G solvation = -59.197000 kcal Electronic energy + Delta-G solvation = -23518.233824 eV Core-core repulsion = 19913.940405 eV Total energy + Delta-G solvation = -3604.293419 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.12395 -41.74950 -39.68036 -38.05474 -37.57285 -36.13310 -34.72751 -33.01309 -31.84731 -30.76120 -28.54233 -26.59453 -25.89216 -24.42267 -23.76081 -22.93041 -21.85166 -20.94554 -19.31602 -18.76905 -18.60846 -18.36526 -17.81124 -17.46731 -16.65396 -16.49232 -16.18484 -15.74063 -15.54665 -15.21001 -15.12940 -14.94617 -14.58241 -14.19693 -13.99961 -13.95746 -13.74903 -13.32169 -13.28265 -12.99035 -12.63495 -12.43468 -12.30545 -12.17193 -11.89734 -11.88131 -11.82776 -11.64501 -11.47541 -11.28668 -11.05151 -10.62944 -10.01673 -9.07457 -4.91605 0.06451 0.15179 1.10540 1.31693 1.61085 1.69473 1.85466 1.97166 2.77262 3.15788 3.40241 3.49512 3.57507 3.64415 3.67596 3.80679 3.91142 3.95873 4.10390 4.20127 4.21356 4.28378 4.29302 4.34152 4.36085 4.44469 4.57748 4.63698 4.68969 4.78821 4.82655 4.93517 5.05880 5.10096 5.11993 5.21136 5.27807 5.35711 5.41405 5.78800 6.06035 6.42449 6.64361 6.66254 7.29025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.463 3.537 4 O -0.539 6.539 5 C -0.076 4.076 6 H 0.132 0.868 7 C -0.095 4.095 8 C -0.116 4.116 9 C 0.161 3.839 10 H 0.082 0.918 11 N -0.686 5.686 12 C 0.553 3.447 13 N -0.574 5.574 14 C 0.192 3.808 15 C -0.250 4.250 16 C -0.058 4.058 17 O -0.559 6.559 18 Si 0.752 3.248 19 C 0.212 3.788 20 N -0.590 5.590 21 C -0.119 4.119 22 C -0.099 4.099 23 H 0.061 0.939 24 H 0.128 0.872 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.184 0.816 32 H 0.103 0.897 33 H 0.397 0.603 34 H -0.297 1.297 35 H -0.282 1.282 36 H 0.183 0.817 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 0.465 1.157 1.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.308 3.692 4 O -0.429 6.429 5 C -0.095 4.095 6 H 0.149 0.851 7 C -0.133 4.133 8 C -0.154 4.154 9 C 0.056 3.944 10 H 0.100 0.900 11 N -0.323 5.323 12 C 0.196 3.804 13 N -0.296 5.296 14 C 0.025 3.975 15 C -0.257 4.257 16 C -0.168 4.168 17 O -0.369 6.369 18 Si 0.657 3.343 19 C 0.045 3.955 20 N -0.312 5.312 21 C -0.158 4.158 22 C -0.138 4.138 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.257 0.743 31 H 0.201 0.799 32 H 0.120 0.880 33 H 0.248 0.752 34 H -0.225 1.225 35 H -0.208 1.208 36 H 0.200 0.800 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.627 0.253 0.337 0.755 hybrid contribution 1.384 -0.653 0.729 1.695 sum 0.757 -0.400 1.066 1.368 Atomic orbital electron populations 1.23509 0.75163 1.05531 1.02399 1.86508 1.24654 1.33197 1.83564 1.24331 0.92959 0.80977 0.70970 1.90673 1.68120 1.37405 1.46687 1.21251 0.85125 0.99882 1.03231 0.85060 1.21328 0.95092 0.93177 1.03743 1.21741 0.94323 1.01919 0.97391 1.21045 0.77279 0.96149 0.99951 0.89995 1.44298 1.06358 1.77414 1.04184 1.19653 0.85435 0.87927 0.87408 1.67975 1.40776 1.22733 0.98165 1.23103 0.91208 0.87495 0.95731 1.20821 0.95566 1.12073 0.97289 1.24560 0.99099 0.91959 1.01212 1.86538 1.57241 1.48831 1.44331 0.94422 0.80264 0.85804 0.73820 1.23123 1.01048 0.85589 0.85779 1.67995 1.07060 1.23442 1.32692 1.21863 0.94678 0.96461 1.02794 1.21422 0.95177 1.01543 0.95621 0.92047 0.85419 0.92148 0.91653 0.90414 0.89211 0.90052 0.74266 0.79949 0.87955 0.75205 1.22499 1.20817 0.80024 0.92354 0.90427 0.91561 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.04 10.47 -51.38 -0.54 -1.58 16 3 C 0.46 1.89 7.25 71.23 0.52 2.41 16 4 O -0.54 -5.64 15.73 21.96 0.35 -5.29 16 5 C -0.08 0.16 2.63 -11.54 -0.03 0.13 16 6 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 7 C -0.10 0.20 4.49 30.60 0.14 0.34 16 8 C -0.12 0.57 5.39 30.59 0.16 0.73 16 9 C 0.16 -0.24 2.45 44.99 0.11 -0.13 16 10 H 0.08 0.14 7.50 -2.39 -0.02 0.12 16 11 N -0.69 -0.66 5.22 -330.43 -1.73 -2.39 16 12 C 0.55 3.34 8.40 261.48 2.20 5.53 16 13 N -0.57 -3.33 9.20 -197.98 -1.82 -5.15 16 14 C 0.19 0.49 9.92 84.72 0.84 1.33 16 15 C -0.25 -0.44 5.43 -19.69 -0.11 -0.54 16 16 C -0.06 0.17 2.84 71.24 0.20 0.37 16 17 O -0.56 0.17 12.76 -148.98 -1.90 -1.73 16 18 Si 0.75 -2.87 29.87 68.60 2.05 -0.82 16 19 C 0.21 0.79 10.92 84.71 0.93 1.72 16 20 N -0.59 -4.07 10.46 -197.99 -2.07 -6.14 16 21 C -0.12 0.22 5.51 30.61 0.17 0.39 16 22 C -0.10 0.24 5.14 30.61 0.16 0.40 16 23 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 24 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 25 H 0.06 0.00 8.13 -2.39 -0.02 -0.02 16 26 H 0.06 0.05 8.10 -2.39 -0.02 0.03 16 27 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 28 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.42 -0.70 8.72 -92.71 -0.81 -1.51 16 31 H 0.18 -0.47 5.04 -2.91 -0.01 -0.49 16 32 H 0.10 -0.77 7.96 -2.39 -0.02 -0.79 16 33 H 0.40 -3.28 8.74 -74.05 -0.65 -3.93 16 34 H -0.30 -1.11 7.11 99.48 0.71 -0.40 16 35 H -0.28 -0.07 7.11 99.48 0.71 0.63 16 36 H 0.18 -0.08 8.06 -2.91 -0.02 -0.11 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.08 -0.23 8.11 -2.39 -0.02 -0.25 16 Total: 0.00 -19.57 332.46 0.47 -19.10 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: -0.35 Total: -9.85 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.48 Total: 13.85 kcal Atomic # 7 Polarization: -8.05 SS G_CDS: -5.62 Total: -13.67 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -2.09 Total: -8.60 kcal Atomic # 14 Polarization: -2.87 SS G_CDS: 2.05 Total: -0.82 kcal Total: -19.57 0.47 -19.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_14475162_12175864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.100 kcal (2) G-P(sol) polarization free energy of solvation -19.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds