Wall clock time and date at job start Tue Mar 9 2021 13:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86304 * 109.47019 * 2 1 4 4 C 1.50698 * 109.47009 * 119.99782 * 2 1 3 5 5 C 1.37992 * 120.32662 * 244.99713 * 4 2 1 6 6 N 1.32002 * 120.89822 * 180.02562 * 5 4 2 7 7 C 1.32335 * 121.65321 * 0.02562 * 6 5 4 8 8 N 1.39138 * 119.72402 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00053 * 0.02562 * 8 7 6 10 10 H 1.08998 * 109.46845 * 325.00419 * 9 8 7 11 11 C 1.53006 * 109.47249 * 84.99571 * 9 8 7 12 12 C 1.52997 * 109.47164 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46978 * 299.99874 * 12 11 9 14 14 H 1.08992 * 109.47056 * 300.00064 * 13 12 11 15 15 C 1.50701 * 109.46958 * 180.02562 * 13 12 11 16 16 N 1.30521 * 126.34592 * 144.69130 * 15 13 12 17 17 N 1.28593 * 109.67203 * 179.82774 * 16 15 13 18 18 C 1.30523 * 109.67317 * 0.44319 * 17 16 15 19 19 N 1.35490 * 107.30631 * 359.73292 * 18 17 16 20 20 C 1.52996 * 109.46891 * 60.00410 * 13 12 11 21 21 C 1.52997 * 109.47473 * 204.99869 * 9 8 7 22 22 C 1.39345 * 120.56012 * 0.25418 * 7 6 5 23 23 F 1.35102 * 120.47393 * 179.71824 * 22 7 6 24 24 C 1.38446 * 119.05697 * 359.49531 * 22 7 6 25 25 H 0.96705 * 114.00000 * 59.99981 * 1 2 3 26 26 H 1.09001 * 109.47593 * 240.00353 * 2 1 3 27 27 H 1.48493 * 110.00270 * 59.99986 * 3 2 1 28 28 H 1.48506 * 109.99901 * 181.31791 * 3 2 1 29 29 H 1.07997 * 119.55005 * 0.05025 * 5 4 2 30 30 H 0.97005 * 120.00574 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 32 32 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 33 33 H 1.09002 * 109.47045 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.47375 * 59.99966 * 12 11 9 35 35 H 1.07997 * 126.34438 * 179.73054 * 18 17 16 36 36 H 0.96997 * 126.97787 * 179.97438 * 19 18 17 37 37 H 1.09004 * 109.47368 * 179.97438 * 20 13 12 38 38 H 1.09001 * 109.47372 * 59.99964 * 20 13 12 39 39 H 1.09002 * 109.47153 * 59.99757 * 21 9 8 40 40 H 1.09001 * 109.46832 * 299.99948 * 21 9 8 41 41 H 1.07997 * 120.76004 * 180.23998 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6381 -0.0200 2.1938 6 7 3.0838 -0.6311 3.2757 7 6 2.8737 -1.9215 3.4807 8 7 3.3621 -2.5250 4.6353 9 6 4.1049 -1.7323 5.6182 10 1 4.6980 -0.9771 5.1024 11 6 3.1213 -1.0466 6.5687 12 6 3.8971 -0.2182 7.5948 13 6 4.8241 -1.1354 8.3949 14 1 4.2312 -1.8905 8.9109 15 6 5.5877 -0.3196 9.4060 16 7 5.9357 -0.7017 10.6045 17 7 6.5784 0.2450 11.1912 18 6 6.6616 1.2775 10.3971 19 7 6.0353 0.9487 9.2415 20 6 5.8077 -1.8210 7.4444 21 6 5.0317 -2.6499 6.4182 22 6 2.1726 -2.6822 2.5473 23 9 1.9641 -4.0007 2.7557 24 6 1.6886 -2.0668 1.4054 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5138 -0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5346 1.7703 -0.0321 29 1 2.8290 1.0346 2.0609 30 1 3.2102 -3.4705 4.7899 31 1 2.5282 -1.8017 7.0845 32 1 2.4611 -0.3928 5.9987 33 1 3.1963 0.2700 8.2722 34 1 4.4900 0.5370 7.0787 35 1 7.1408 2.2193 10.6199 36 1 5.9286 1.5079 8.4562 37 1 6.4685 -2.4742 8.0144 38 1 6.4006 -1.0659 6.9283 39 1 5.7324 -3.1383 5.7411 40 1 4.4385 -3.4050 6.9340 41 1 1.1382 -2.6293 0.6658 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16607478_17656566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:10 Heat of formation + Delta-G solvation = 39.877461 kcal Electronic energy + Delta-G solvation = -26528.878519 eV Core-core repulsion = 22553.949977 eV Total energy + Delta-G solvation = -3974.928542 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.90834 -44.12304 -41.53144 -40.06990 -38.00338 -36.49307 -34.67114 -33.50638 -32.87848 -32.06428 -31.32261 -29.41749 -26.54156 -25.39024 -24.34804 -24.01609 -23.23348 -22.75376 -22.07142 -21.14779 -19.40704 -19.28966 -18.63327 -18.38258 -18.04120 -17.01565 -16.89857 -16.75904 -16.49751 -16.30295 -15.87960 -15.54302 -15.49240 -15.17518 -15.01258 -14.73493 -14.45406 -14.27637 -14.06924 -13.94103 -13.67708 -13.45072 -12.80293 -12.70023 -12.48542 -12.42880 -12.29919 -12.14569 -12.03847 -11.81308 -11.60116 -11.28589 -11.23312 -10.80044 -10.71816 -10.38854 -10.18001 -8.82923 -5.09619 -0.13994 0.07314 0.81420 1.15190 1.53259 1.75921 1.83044 1.86575 1.92711 2.46171 2.98267 3.06626 3.15532 3.27821 3.38516 3.48674 3.59465 3.71350 3.77979 3.79344 3.93764 3.98953 4.05549 4.15603 4.19275 4.20139 4.22618 4.34199 4.39639 4.47635 4.54623 4.61266 4.64404 4.82044 4.83790 4.89651 4.91452 4.92725 5.07089 5.10502 5.16370 5.33871 5.88123 6.03461 6.10626 6.52102 6.87751 7.76148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.059 4.059 3 Si 0.682 3.318 4 C -0.163 4.163 5 C 0.142 3.858 6 N -0.511 5.511 7 C 0.391 3.609 8 N -0.713 5.713 9 C 0.156 3.844 10 H 0.092 0.908 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.004 4.004 14 H 0.110 0.890 15 C 0.187 3.813 16 N -0.291 5.291 17 N -0.296 5.296 18 C 0.154 3.846 19 N -0.581 5.581 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.018 4.018 23 F -0.132 7.132 24 C -0.035 4.035 25 H 0.384 0.616 26 H 0.076 0.924 27 H -0.247 1.247 28 H -0.251 1.251 29 H 0.154 0.846 30 H 0.413 0.587 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.223 0.777 36 H 0.429 0.571 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 4.079 -7.619 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.171 4.171 3 Si 0.583 3.417 4 C -0.168 4.168 5 C -0.015 4.015 6 N -0.228 5.228 7 C 0.153 3.847 8 N -0.346 5.346 9 C 0.051 3.949 10 H 0.110 0.890 11 C -0.166 4.166 12 C -0.152 4.152 13 C -0.025 4.025 14 H 0.128 0.872 15 C -0.082 4.082 16 N -0.132 5.132 17 N -0.135 5.135 18 C -0.135 4.135 19 N -0.194 5.194 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.044 4.044 23 F -0.110 7.110 24 C -0.061 4.061 25 H 0.232 0.768 26 H 0.094 0.906 27 H -0.172 1.172 28 H -0.176 1.176 29 H 0.171 0.829 30 H 0.250 0.750 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.268 0.732 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.643 3.931 -4.460 5.980 hybrid contribution -0.693 -0.347 -1.867 2.022 sum -0.050 3.585 -6.327 7.272 Atomic orbital electron populations 1.86500 1.17172 1.81854 1.49799 1.24468 0.85772 1.10229 0.96603 0.95038 0.80958 0.78020 0.87732 1.19921 1.04639 0.93914 0.98350 1.22149 0.92729 0.98874 0.87770 1.67259 1.25149 1.07465 1.22928 1.18401 0.90527 0.88854 0.86938 1.44641 1.59348 1.12038 1.18526 1.21005 0.92035 0.93553 0.88302 0.89001 1.21923 0.98314 0.99732 0.96666 1.21593 0.98303 0.97754 0.97560 1.19787 0.94858 0.95982 0.91825 0.87206 1.24858 1.01732 0.84717 0.96927 1.74309 1.13057 1.22277 1.03518 1.74307 1.15564 0.97870 1.25774 1.26582 1.00816 1.02539 0.83606 1.44130 1.43913 1.14345 1.16994 1.21519 0.97272 0.99508 0.96084 1.21828 0.98643 0.98270 0.97814 1.17981 1.08513 0.79531 0.98375 1.91499 1.93718 1.30897 1.94934 1.21276 0.95186 0.94320 0.95336 0.76844 0.90602 1.17195 1.17604 0.82931 0.74980 0.91190 0.90716 0.90802 0.91693 0.76112 0.73155 0.90154 0.91477 0.90501 0.90623 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.56 12.82 -35.23 -0.45 0.11 16 2 C -0.06 0.09 2.81 36.00 0.10 0.19 16 3 Si 0.68 -1.73 29.88 -169.99 -5.08 -6.80 16 4 C -0.16 -0.19 5.39 -104.47 -0.56 -0.76 16 5 C 0.14 0.25 9.84 -17.57 -0.17 0.08 16 6 N -0.51 -1.21 9.20 -12.37 -0.11 -1.33 16 7 C 0.39 0.74 7.47 -154.86 -1.16 -0.42 16 8 N -0.71 0.17 5.22 -53.85 -0.28 -0.12 16 9 C 0.16 -0.22 2.47 -67.93 -0.17 -0.39 16 10 H 0.09 -0.03 7.54 -51.93 -0.39 -0.43 16 11 C -0.13 0.19 5.51 -26.73 -0.15 0.05 16 12 C -0.11 0.28 4.97 -26.73 -0.13 0.15 16 13 C 0.00 0.01 2.66 -91.77 -0.24 -0.24 16 14 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 15 C 0.19 0.19 6.99 -154.98 -1.08 -0.89 16 16 N -0.29 -1.49 12.21 32.80 0.40 -1.09 16 17 N -0.30 -1.46 12.21 29.69 0.36 -1.10 16 18 C 0.15 0.02 13.19 -89.95 -1.19 -1.17 16 19 N -0.58 0.85 5.96 -11.36 -0.07 0.78 16 20 C -0.10 0.23 5.19 -26.71 -0.14 0.09 16 21 C -0.13 0.33 5.39 -26.71 -0.14 0.19 16 22 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16 23 F -0.13 -0.30 16.65 2.25 0.04 -0.27 16 24 C -0.03 -0.05 9.82 -39.26 -0.39 -0.43 16 25 H 0.38 -2.30 8.74 45.56 0.40 -1.91 16 26 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 27 H -0.25 -0.10 7.05 56.52 0.40 0.30 16 28 H -0.25 0.05 7.11 56.52 0.40 0.45 16 29 H 0.15 0.10 4.87 -52.49 -0.26 -0.15 16 30 H 0.41 -0.54 8.07 -40.82 -0.33 -0.87 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 34 H 0.06 -0.22 7.52 -51.93 -0.39 -0.61 16 35 H 0.22 -0.94 8.06 -52.49 -0.42 -1.36 16 36 H 0.43 -2.08 8.29 -40.82 -0.34 -2.41 16 37 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 38 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 40 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 41 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 LS Contribution 341.59 15.07 5.15 5.15 Total: 0.00 -10.13 341.59 -10.90 -21.03 By element: Atomic # 1 Polarization: -7.32 SS G_CDS: -5.15 Total: -12.46 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -5.71 Total: -3.89 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: 0.30 Total: -2.86 kcal Atomic # 8 Polarization: 0.56 SS G_CDS: -0.45 Total: 0.11 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: -1.73 SS G_CDS: -5.08 Total: -6.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -10.13 -10.90 -21.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16607478_17656566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.904 kcal (2) G-P(sol) polarization free energy of solvation -10.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds