Wall clock time and date at job start Tue Mar 9 2021 13:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33325 * 125.95469 * 2 1 4 4 C 1.50701 * 122.70917 * 0.02562 * 3 2 1 5 5 O 1.42903 * 109.46878 * 329.73372 * 4 3 2 6 6 Si 1.86303 * 109.47233 * 209.73602 * 4 3 2 7 7 N 1.32122 * 114.57955 * 179.75825 * 3 2 1 8 8 C 1.29684 * 116.86923 * 0.24606 * 7 3 2 9 9 N 1.38610 * 124.95158 * 180.02562 * 8 7 3 10 10 C 1.46494 * 119.99983 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47438 * 324.99708 * 10 9 8 12 12 C 1.52996 * 109.47295 * 85.00014 * 10 9 8 13 13 C 1.53001 * 109.47352 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47024 * 300.00173 * 13 12 10 15 15 H 1.09002 * 109.47151 * 299.99751 * 14 13 12 16 16 N 1.46501 * 109.47286 * 179.97438 * 14 13 12 17 17 C 1.46453 * 126.08445 * 300.00100 * 16 14 13 18 18 C 1.53190 * 113.70572 * 178.24428 * 17 16 14 19 19 C 1.55558 * 106.24271 * 27.54889 * 18 17 16 20 20 S 1.67290 * 126.08522 * 119.68745 * 16 14 13 21 21 O 1.42101 * 105.40368 * 274.99937 * 20 16 14 22 22 O 1.42102 * 105.40602 * 45.25554 * 20 16 14 23 23 C 1.53006 * 109.47148 * 59.99766 * 14 13 12 24 24 C 1.52998 * 109.46999 * 299.99972 * 23 14 13 25 25 S 1.70965 * 110.09953 * 0.02562 * 8 7 3 26 26 H 1.08998 * 109.47008 * 89.99700 * 1 2 3 27 27 H 1.09002 * 109.46897 * 210.00252 * 1 2 3 28 28 H 1.09006 * 109.46606 * 329.99841 * 1 2 3 29 29 H 1.09002 * 109.47060 * 89.73502 * 4 3 2 30 30 H 0.96700 * 114.00234 * 299.99722 * 5 4 3 31 31 H 1.48502 * 109.99951 * 180.02562 * 6 4 3 32 32 H 1.48507 * 109.99767 * 301.31682 * 6 4 3 33 33 H 0.97003 * 119.99866 * 0.02562 * 9 8 7 34 34 H 1.09002 * 109.47177 * 300.00080 * 12 10 9 35 35 H 1.09002 * 109.47054 * 60.00052 * 12 10 9 36 36 H 1.08995 * 109.47335 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.47364 * 59.99704 * 13 12 10 38 38 H 1.08999 * 108.64262 * 299.35913 * 17 16 14 39 39 H 1.09001 * 108.64461 * 57.30635 * 17 16 14 40 40 H 1.09007 * 110.09988 * 146.74254 * 18 17 16 41 41 H 1.08998 * 110.10046 * 268.28880 * 18 17 16 42 42 H 1.09002 * 111.37072 * 80.61398 * 19 18 17 43 43 H 1.08998 * 111.37227 * 205.35427 * 19 18 17 44 44 H 1.09000 * 109.46615 * 179.97438 * 23 14 13 45 45 H 1.08996 * 109.46715 * 60.00547 * 23 14 13 46 46 H 1.09002 * 109.47179 * 299.99941 * 24 23 14 47 47 H 1.09005 * 109.46982 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0792 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4840 2.5034 -0.6780 6 14 2.9359 3.6166 -0.8708 7 7 3.5851 0.8187 0.0051 8 6 3.9315 -0.4310 0.0044 9 7 5.2384 -0.8928 0.0097 10 6 5.5065 -2.3330 0.0088 11 1 4.7427 -2.8451 0.5941 12 6 5.4827 -2.8553 -1.4290 13 6 5.7633 -4.3594 -1.4300 14 6 7.1393 -4.6219 -0.8146 15 1 7.9029 -4.1095 -1.4000 16 7 7.4078 -6.0621 -0.8149 17 6 6.6098 -7.0884 -0.1406 18 6 7.1248 -8.5139 -0.3632 19 6 8.6545 -8.3893 -0.6165 20 16 8.6763 -6.8277 -1.5917 21 8 8.2307 -7.0385 -2.9245 22 8 9.8262 -6.0469 -1.2966 23 6 7.1631 -4.0995 0.6233 24 6 6.8825 -2.5954 0.6242 25 16 2.5413 -1.4261 -0.0040 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6053 2.8194 1.0284 30 1 0.5299 2.2154 -1.6000 31 1 2.4069 5.0042 -0.8765 32 1 4.2570 3.5799 -0.1935 33 1 5.9756 -0.2622 0.0147 34 1 4.5026 -2.6679 -1.8675 35 1 6.2466 -2.3433 -2.0143 36 1 5.7469 -4.7314 -2.4543 37 1 4.9999 -4.8718 -0.8446 38 1 6.6084 -6.8814 0.9295 39 1 5.5849 -7.0295 -0.5070 40 1 6.9401 -9.1215 0.5228 41 1 6.6355 -8.9579 -1.2301 42 1 9.2048 -8.2851 0.3186 43 1 9.0297 -9.2280 -1.2030 44 1 8.1432 -4.2869 1.0618 45 1 6.3996 -4.6119 1.2086 46 1 7.6460 -2.0831 0.0388 47 1 6.8990 -2.2234 1.6486 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16729366_15704122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:25 Heat of formation + Delta-G solvation = -43.834442 kcal Electronic energy + Delta-G solvation = -30384.027279 eV Core-core repulsion = 26208.327907 eV Total energy + Delta-G solvation = -4175.699372 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.117 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -41.09038 -40.49130 -38.51052 -38.08617 -37.57522 -36.93212 -35.96965 -33.62370 -32.40367 -32.07890 -29.85475 -28.63573 -27.44432 -25.57652 -24.60992 -23.95046 -23.64342 -22.91721 -21.27129 -20.26815 -19.98082 -19.09945 -18.47468 -18.01337 -17.89551 -17.30354 -16.98431 -16.86734 -16.54656 -16.15833 -15.91060 -15.62302 -15.55124 -15.40449 -15.08001 -14.83937 -14.68603 -14.33310 -14.12482 -14.06753 -13.77964 -13.72865 -13.60158 -13.45649 -13.28967 -13.14179 -13.01630 -12.94832 -12.77110 -12.62489 -12.56816 -12.40298 -12.25139 -12.20106 -11.82864 -11.76173 -11.67429 -11.46643 -10.97524 -10.52168 -10.27047 -10.05993 -9.94997 -8.59531 -4.81817 -0.89456 0.06817 0.21326 0.82916 1.31595 1.42333 1.85517 1.93543 1.98146 2.28234 2.49102 2.65018 3.07738 3.32746 3.34045 3.39831 3.46031 3.57809 3.64407 3.66624 3.79855 3.90473 3.97382 4.04849 4.12224 4.20390 4.21292 4.24691 4.30979 4.33891 4.38099 4.53204 4.55012 4.56107 4.57216 4.61490 4.77257 4.80231 4.86738 4.89040 4.91956 4.96393 5.10524 5.14903 5.20622 5.34385 5.46396 5.61966 6.28318 6.53392 7.00493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.240 4.240 3 C 0.067 3.933 4 C -0.034 4.034 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.546 5.546 8 C 0.322 3.678 9 N -0.691 5.691 10 C 0.150 3.850 11 H 0.083 0.917 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.187 3.813 15 H 0.093 0.907 16 N -0.984 5.984 17 C 0.078 3.922 18 C -0.125 4.125 19 C -0.590 4.590 20 S 2.560 3.440 21 O -0.947 6.947 22 O -0.956 6.956 23 C -0.125 4.125 24 C -0.124 4.124 25 S 0.096 5.904 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.379 0.621 31 H -0.262 1.262 32 H -0.252 1.252 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 -5.800 1.286 6.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.362 4.362 3 C -0.063 4.063 4 C -0.147 4.147 5 O -0.341 6.341 6 Si 0.617 3.383 7 N -0.272 5.272 8 C -0.049 4.049 9 N -0.331 5.331 10 C 0.045 3.955 11 H 0.101 0.899 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.083 3.917 15 H 0.111 0.889 16 N -0.824 5.824 17 C -0.049 4.049 18 C -0.164 4.164 19 C -0.721 4.721 20 S 2.657 3.343 21 O -0.937 6.937 22 O -0.945 6.945 23 C -0.165 4.165 24 C -0.163 4.163 25 S 0.345 5.655 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.226 0.774 31 H -0.188 1.188 32 H -0.176 1.176 33 H 0.251 0.749 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.178 -5.334 1.149 5.459 hybrid contribution -0.369 0.150 1.181 1.247 sum -0.546 -5.184 2.331 5.710 Atomic orbital electron populations 1.20206 0.86430 1.03085 1.02720 1.25136 1.01296 0.92726 1.17083 1.20127 0.86771 0.97127 1.02270 1.24511 0.92532 0.95590 1.02053 1.86503 1.28946 1.89717 1.28898 0.94072 0.77598 0.76421 0.90238 1.65975 1.17246 1.16670 1.27346 1.23277 0.91817 0.91425 0.98425 1.44057 1.01820 1.06951 1.80288 1.21220 0.98502 0.78885 0.96873 0.89868 1.22068 1.03490 0.95604 0.96480 1.21915 0.96869 0.95493 1.02583 1.20662 0.97654 0.76636 0.96770 0.88871 1.57189 1.44429 1.11952 1.68865 1.21540 0.97685 0.86108 0.99528 1.22414 0.91190 0.96360 1.06453 1.30776 1.03981 1.21358 1.15967 1.06818 0.74117 0.77811 0.75539 1.93670 1.80756 1.85624 1.33624 1.93618 1.49228 1.66564 1.85101 1.21862 1.03506 0.94381 0.96756 1.21761 0.95426 0.96868 1.02222 1.83950 0.96628 1.10673 1.74229 0.91045 0.92331 0.89092 0.86313 0.77351 1.18808 1.17648 0.74942 0.90671 0.90572 0.90203 0.90833 0.90621 0.90079 0.87038 0.88513 0.83955 0.84154 0.90074 0.90827 0.90369 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.01 8.95 36.01 0.32 0.33 16 2 C -0.24 -0.35 6.50 -36.02 -0.23 -0.58 16 3 C 0.07 0.15 5.92 -84.18 -0.50 -0.34 16 4 C -0.03 -0.04 2.82 36.01 0.10 0.06 16 5 O -0.54 -0.07 9.91 -35.23 -0.35 -0.42 16 6 Si 0.72 0.87 32.08 -169.99 -5.45 -4.59 16 7 N -0.55 -1.73 8.95 -11.36 -0.10 -1.83 16 8 C 0.32 0.48 8.22 -87.68 -0.72 -0.24 16 9 N -0.69 0.53 5.23 -55.79 -0.29 0.24 16 10 C 0.15 -0.38 2.40 -67.93 -0.16 -0.55 16 11 H 0.08 -0.20 7.26 -51.93 -0.38 -0.58 16 12 C -0.14 0.34 5.51 -26.73 -0.15 0.19 16 13 C -0.13 0.34 5.24 -26.73 -0.14 0.20 16 14 C 0.19 -0.39 2.86 -67.93 -0.19 -0.58 16 15 H 0.09 -0.13 8.10 -51.93 -0.42 -0.55 16 16 N -0.98 2.02 3.13 -107.22 -0.34 1.69 16 17 C 0.08 -0.35 6.19 -3.97 -0.02 -0.37 16 18 C -0.12 0.65 6.61 -25.27 -0.17 0.48 16 19 C -0.59 2.48 7.67 38.52 0.30 2.77 16 20 S 2.56 -0.59 6.17 -107.50 -0.66 -1.26 16 21 O -0.95 -3.24 18.14 -57.37 -1.04 -4.28 16 22 O -0.96 -3.22 18.04 -57.37 -1.03 -4.26 16 23 C -0.13 0.41 5.25 -26.73 -0.14 0.27 16 24 C -0.12 0.41 5.39 -26.73 -0.14 0.27 16 25 S 0.10 0.05 21.68 -107.50 -2.33 -2.28 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.09 0.05 6.63 -51.93 -0.34 -0.29 16 29 H 0.12 0.20 7.96 -51.93 -0.41 -0.21 16 30 H 0.38 -1.22 8.68 45.56 0.40 -0.83 16 31 H -0.26 -0.95 7.11 56.52 0.40 -0.55 16 32 H -0.25 -1.18 7.11 56.52 0.40 -0.78 16 33 H 0.41 -0.51 8.73 -40.82 -0.36 -0.87 16 34 H 0.07 -0.13 8.04 -51.93 -0.42 -0.55 16 35 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 36 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.07 -0.25 7.59 -51.93 -0.39 -0.64 16 38 H 0.08 -0.42 7.73 -51.93 -0.40 -0.82 16 39 H 0.08 -0.40 7.60 -51.93 -0.39 -0.80 16 40 H 0.11 -0.75 8.14 -51.92 -0.42 -1.17 16 41 H 0.10 -0.51 8.14 -51.93 -0.42 -0.94 16 42 H 0.14 -0.76 8.14 -51.93 -0.42 -1.18 16 43 H 0.14 -0.75 8.14 -51.93 -0.42 -1.17 16 44 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 45 H 0.07 -0.29 7.68 -51.93 -0.40 -0.69 16 46 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 47 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 392.63 15.07 5.92 5.92 Total: 0.00 -11.03 392.63 -14.91 -25.94 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -7.37 Total: -16.77 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.85 Total: 1.91 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -0.73 Total: 0.09 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -2.42 Total: -8.96 kcal Atomic # 14 Polarization: 0.87 SS G_CDS: -5.45 Total: -4.59 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.99 Total: -3.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -11.03 -14.91 -25.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16729366_15704122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.899 kcal (2) G-P(sol) polarization free energy of solvation -11.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds