Wall clock time and date at job start Tue Mar 9 2021 13:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47215 * 2 1 4 4 C 1.50708 * 109.47264 * 239.99961 * 2 1 3 5 5 C 1.37987 * 120.32262 * 119.99999 * 4 2 1 6 6 N 1.32007 * 120.89693 * 180.02562 * 5 4 2 7 7 C 1.32346 * 121.64823 * 359.97438 * 6 5 4 8 8 N 1.39136 * 119.71624 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00603 * 359.97438 * 8 7 6 10 10 H 1.09003 * 109.46838 * 35.00374 * 9 8 7 11 11 C 1.52995 * 109.47575 * 154.99912 * 9 8 7 12 12 C 1.52995 * 109.47505 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46954 * 299.99927 * 12 11 9 14 14 H 1.09003 * 109.47348 * 300.00265 * 13 12 11 15 15 N 1.46502 * 109.47400 * 179.97438 * 13 12 11 16 16 C 1.46446 * 126.08568 * 300.00512 * 15 13 12 17 17 C 1.53195 * 113.70536 * 178.24160 * 16 15 13 18 18 C 1.55564 * 106.24272 * 27.54977 * 17 16 15 19 19 S 1.67290 * 126.08255 * 119.68614 * 15 13 12 20 20 O 1.42102 * 105.41124 * 275.00155 * 19 15 13 21 21 O 1.42100 * 105.40590 * 45.26364 * 19 15 13 22 22 C 1.52996 * 109.47068 * 60.00112 * 13 12 11 23 23 C 1.53001 * 109.47177 * 275.00475 * 9 8 7 24 24 C 1.39337 * 120.56141 * 359.97438 * 7 6 5 25 25 F 1.35105 * 120.47086 * 179.97438 * 24 7 6 26 26 C 1.38445 * 119.05894 * 0.02562 * 24 7 6 27 27 H 0.96696 * 114.00272 * 299.99936 * 1 2 3 28 28 H 1.09002 * 109.47529 * 119.99813 * 2 1 3 29 29 H 1.48497 * 110.00652 * 178.68360 * 3 2 1 30 30 H 1.48506 * 109.99830 * 300.00327 * 3 2 1 31 31 H 1.07999 * 119.55362 * 0.02562 * 5 4 2 32 32 H 0.97004 * 119.99750 * 179.97438 * 8 7 6 33 33 H 1.09006 * 109.47239 * 300.00674 * 11 9 8 34 34 H 1.08997 * 109.46981 * 60.00028 * 11 9 8 35 35 H 1.08997 * 109.47415 * 59.99759 * 12 11 9 36 36 H 1.09000 * 109.47438 * 180.02562 * 12 11 9 37 37 H 1.08993 * 108.64526 * 299.35617 * 16 15 13 38 38 H 1.08998 * 108.64476 * 57.30993 * 16 15 13 39 39 H 1.09000 * 110.10257 * 146.74185 * 17 16 15 40 40 H 1.09001 * 110.10503 * 268.35699 * 17 16 15 41 41 H 1.08995 * 111.36740 * 80.61221 * 18 17 16 42 42 H 1.08994 * 111.36845 * 205.40803 * 18 17 16 43 43 H 1.09002 * 109.47643 * 60.00019 * 22 13 12 44 44 H 1.09002 * 109.47351 * 180.02562 * 22 13 12 45 45 H 1.08996 * 109.46982 * 299.98837 * 23 9 8 46 46 H 1.08992 * 109.47358 * 60.00092 * 23 9 8 47 47 H 1.08004 * 120.76038 * 179.72936 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7251 -0.0463 -2.1432 6 7 3.1709 -0.6573 -3.2250 7 6 2.8784 -1.9230 -3.4780 8 7 3.3704 -2.5276 -4.6305 9 6 4.2080 -1.7634 -5.5582 10 1 4.8314 -1.0679 -4.9962 11 6 5.0998 -2.7228 -6.3488 12 6 5.9750 -1.9247 -7.3172 13 6 5.0835 -1.1430 -8.2843 14 1 4.4602 -1.8383 -8.8466 15 7 5.9215 -0.3783 -9.2112 16 6 6.8930 0.6543 -8.8443 17 6 7.6468 1.2437 -10.0407 18 6 6.6994 1.0990 -11.2661 19 16 5.9442 -0.5344 -10.8767 20 8 6.8433 -1.6019 -11.1437 21 8 4.5796 -0.5826 -11.2700 22 6 4.1919 -0.1836 -7.4937 23 6 3.3162 -0.9821 -6.5252 24 6 2.0827 -2.6555 -2.5994 25 9 1.7847 -3.9473 -2.8598 26 6 1.6008 -2.0405 -1.4565 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5138 0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 2.9851 0.9876 -1.9701 32 1 3.1588 -3.4552 -4.8197 33 1 5.7351 -3.2795 -5.6599 34 1 4.4765 -3.4184 -6.9108 35 1 6.5982 -1.2294 -6.7549 36 1 6.6100 -2.6083 -7.8808 37 1 6.3681 1.4603 -8.3317 38 1 7.6196 0.2207 -8.1572 39 1 7.8697 2.2956 -9.8618 40 1 8.5691 0.6889 -10.2128 41 1 5.9514 1.8916 -11.2855 42 1 7.2605 1.0628 -12.1998 43 1 4.8151 0.5118 -6.9314 44 1 3.5564 0.3730 -8.1826 45 1 2.6930 -1.6776 -7.0872 46 1 2.6810 -0.2985 -5.9619 47 1 0.9782 -2.5811 -0.7590 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16729366_17656566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:30 Heat of formation + Delta-G solvation = -89.630705 kcal Electronic energy + Delta-G solvation = -32399.647021 eV Core-core repulsion = 27818.893171 eV Total energy + Delta-G solvation = -4580.753850 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.135 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -49.85051 -41.47851 -40.29550 -38.42464 -38.06476 -37.66241 -36.88756 -36.02306 -33.73258 -33.13390 -31.91604 -31.51553 -29.17889 -27.49695 -26.32975 -25.06046 -23.84492 -23.70529 -22.90117 -22.41648 -20.88606 -19.92585 -19.24504 -18.61253 -18.39795 -18.27569 -17.97341 -17.92320 -16.97192 -16.86098 -16.79301 -16.39143 -16.07683 -15.76824 -15.51162 -15.45907 -15.23438 -15.03933 -14.79168 -14.67030 -14.55181 -14.37671 -14.21122 -14.00116 -13.89222 -13.63281 -13.48999 -13.28512 -13.09539 -12.96841 -12.85514 -12.70098 -12.55734 -12.39550 -12.28528 -12.13732 -12.05724 -11.77692 -11.58853 -11.34726 -11.15222 -10.74504 -10.65874 -10.33653 -9.97410 -8.75214 -5.05564 -0.84326 -0.07957 0.13757 1.19819 1.37658 1.57342 1.88338 1.94651 2.52845 2.54056 2.70501 3.05582 3.12583 3.18777 3.32387 3.39720 3.52739 3.60503 3.64206 3.69429 3.82232 3.83885 3.93789 4.02469 4.07591 4.13201 4.20477 4.25569 4.27898 4.36332 4.37897 4.38868 4.45830 4.51030 4.62569 4.64079 4.65968 4.69286 4.72647 4.94394 4.98007 5.01860 5.03663 5.11609 5.25072 5.30443 5.42783 5.55059 5.95881 6.17803 6.55776 6.94783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.059 4.059 3 Si 0.682 3.318 4 C -0.164 4.164 5 C 0.141 3.859 6 N -0.510 5.510 7 C 0.392 3.608 8 N -0.713 5.713 9 C 0.155 3.845 10 H 0.093 0.907 11 C -0.128 4.128 12 C -0.126 4.126 13 C 0.188 3.812 14 H 0.092 0.908 15 N -0.984 5.984 16 C 0.078 3.922 17 C -0.125 4.125 18 C -0.590 4.590 19 S 2.560 3.440 20 O -0.949 6.949 21 O -0.956 6.956 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.019 4.019 25 F -0.132 7.132 26 C -0.034 4.034 27 H 0.384 0.616 28 H 0.076 0.924 29 H -0.251 1.251 30 H -0.247 1.247 31 H 0.153 0.847 32 H 0.412 0.588 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 5.123 5.129 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.170 4.170 3 Si 0.582 3.418 4 C -0.170 4.170 5 C -0.016 4.016 6 N -0.227 5.227 7 C 0.153 3.847 8 N -0.345 5.345 9 C 0.051 3.949 10 H 0.111 0.889 11 C -0.166 4.166 12 C -0.166 4.166 13 C 0.083 3.917 14 H 0.109 0.891 15 N -0.824 5.824 16 C -0.048 4.048 17 C -0.164 4.164 18 C -0.721 4.721 19 S 2.657 3.343 20 O -0.938 6.938 21 O -0.945 6.945 22 C -0.164 4.164 23 C -0.168 4.168 24 C -0.045 4.045 25 F -0.111 7.111 26 C -0.061 4.061 27 H 0.231 0.769 28 H 0.094 0.906 29 H -0.176 1.176 30 H -0.172 1.172 31 H 0.170 0.830 32 H 0.249 0.751 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.944 5.069 2.862 6.523 hybrid contribution -0.360 -0.916 0.553 1.128 sum 2.584 4.153 3.415 5.966 Atomic orbital electron populations 1.86491 1.17205 1.81849 1.49794 1.24466 0.85736 1.10195 0.96634 0.95102 0.80839 0.77992 0.87832 1.19927 1.03766 0.94432 0.98835 1.22115 0.92838 0.98558 0.88044 1.67275 1.26509 1.07578 1.21317 1.18402 0.90145 0.88988 0.87152 1.44663 1.54839 1.14580 1.20467 1.21030 0.91106 0.93316 0.89476 0.88873 1.21811 0.98429 0.98126 0.98283 1.21869 0.98206 0.99397 0.97087 1.20667 0.89759 0.91540 0.89695 0.89050 1.57183 1.51024 1.49598 1.24601 1.21530 0.92632 0.91915 0.98771 1.22416 0.98248 1.05351 0.90367 1.30772 1.12017 1.22649 1.06641 1.06814 0.75315 0.77719 0.74458 1.93666 1.66696 1.49977 1.83464 1.93618 1.32952 1.86764 1.81192 1.21864 0.98220 0.98287 0.98065 1.21948 0.98334 0.99520 0.97027 1.17984 1.06761 0.80998 0.98755 1.91496 1.92164 1.33488 1.93954 1.21253 0.95818 0.94176 0.94818 0.76851 0.90593 1.17607 1.17157 0.82992 0.75057 0.90554 0.90938 0.90803 0.90323 0.90607 0.90141 0.87053 0.88552 0.83955 0.84180 0.90979 0.90690 0.91493 0.90783 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.35 12.75 -35.23 -0.45 -0.10 16 2 C -0.06 0.06 2.83 36.01 0.10 0.16 16 3 Si 0.68 -1.44 29.82 -169.99 -5.07 -6.51 16 4 C -0.16 -0.28 5.43 -104.46 -0.57 -0.85 16 5 C 0.14 0.34 9.84 -17.57 -0.17 0.17 16 6 N -0.51 -1.62 9.20 -12.37 -0.11 -1.73 16 7 C 0.39 1.05 7.47 -154.86 -1.16 -0.11 16 8 N -0.71 -0.51 5.22 -53.85 -0.28 -0.79 16 9 C 0.16 -0.04 2.47 -67.93 -0.17 -0.21 16 10 H 0.09 0.07 7.54 -51.93 -0.39 -0.32 16 11 C -0.13 0.19 5.39 -26.74 -0.14 0.05 16 12 C -0.13 0.16 5.24 -26.73 -0.14 0.02 16 13 C 0.19 -0.07 2.86 -67.93 -0.19 -0.26 16 14 H 0.09 0.03 8.10 -51.93 -0.42 -0.39 16 15 N -0.98 0.64 3.13 -107.23 -0.34 0.31 16 16 C 0.08 -0.25 6.19 -3.97 -0.02 -0.27 16 17 C -0.12 0.52 6.61 -25.27 -0.17 0.36 16 18 C -0.59 1.92 7.67 38.52 0.30 2.21 16 19 S 2.56 2.20 6.16 -107.50 -0.66 1.54 16 20 O -0.95 -4.11 18.14 -57.37 -1.04 -5.16 16 21 O -0.96 -4.34 18.04 -57.37 -1.03 -5.37 16 22 C -0.12 0.08 5.25 -26.71 -0.14 -0.06 16 23 C -0.13 -0.01 5.51 -26.70 -0.15 -0.15 16 24 C -0.02 -0.05 7.35 -39.10 -0.29 -0.34 16 25 F -0.13 -0.39 16.65 2.25 0.04 -0.35 16 26 C -0.03 -0.07 9.75 -39.26 -0.38 -0.45 16 27 H 0.38 -2.17 8.74 45.56 0.40 -1.77 16 28 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 29 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 30 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 31 H 0.15 0.19 4.88 -52.49 -0.26 -0.06 16 32 H 0.41 -0.17 8.07 -40.82 -0.33 -0.50 16 33 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.07 -0.14 7.59 -51.93 -0.39 -0.53 16 36 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.08 -0.31 7.73 -51.93 -0.40 -0.71 16 38 H 0.08 -0.30 7.60 -51.93 -0.39 -0.69 16 39 H 0.11 -0.64 8.14 -51.93 -0.42 -1.07 16 40 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 41 H 0.14 -0.62 8.14 -51.93 -0.42 -1.04 16 42 H 0.14 -0.64 8.14 -51.93 -0.42 -1.06 16 43 H 0.07 -0.09 7.68 -51.93 -0.40 -0.49 16 44 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 45 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 47 H 0.15 0.09 8.06 -52.48 -0.42 -0.33 16 LS Contribution 388.57 15.07 5.86 5.86 Total: 0.00 -11.43 388.57 -13.24 -24.67 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: -6.85 Total: -12.62 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -3.29 Total: 0.27 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -0.73 Total: -2.22 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -2.53 Total: -10.63 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.07 Total: -6.51 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -0.66 Total: 1.54 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -11.43 -13.24 -24.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16729366_17656566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.965 kcal (2) G-P(sol) polarization free energy of solvation -11.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds