Wall clock time and date at job start Tue Mar 9 2021 13:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86298 * 109.47215 * 2 1 4 4 C 1.50708 * 109.47264 * 239.99961 * 2 1 3 5 5 C 1.37987 * 120.32262 * 119.99999 * 4 2 1 6 6 N 1.32007 * 120.89693 * 180.02562 * 5 4 2 7 7 C 1.32346 * 121.64823 * 359.97438 * 6 5 4 8 8 N 1.39136 * 119.71624 * 180.02562 * 7 6 5 9 9 C 1.46498 * 120.00603 * 359.97438 * 8 7 6 10 10 H 1.09003 * 109.46838 * 35.00374 * 9 8 7 11 11 C 1.52995 * 109.47575 * 154.99912 * 9 8 7 12 12 C 1.52995 * 109.47505 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46954 * 299.99927 * 12 11 9 14 14 H 1.09003 * 109.47348 * 300.00265 * 13 12 11 15 15 N 1.46502 * 109.47400 * 179.97438 * 13 12 11 16 16 C 1.46446 * 126.08568 * 300.00512 * 15 13 12 17 17 C 1.53195 * 113.70536 * 178.24160 * 16 15 13 18 18 C 1.55564 * 106.24272 * 27.54977 * 17 16 15 19 19 S 1.67290 * 126.08255 * 119.68614 * 15 13 12 20 20 O 1.42102 * 105.41124 * 275.00155 * 19 15 13 21 21 O 1.42100 * 105.40590 * 45.26364 * 19 15 13 22 22 C 1.52996 * 109.47068 * 60.00112 * 13 12 11 23 23 C 1.53001 * 109.47177 * 275.00475 * 9 8 7 24 24 C 1.39337 * 120.56141 * 359.97438 * 7 6 5 25 25 F 1.35105 * 120.47086 * 179.97438 * 24 7 6 26 26 C 1.38445 * 119.05894 * 0.02562 * 24 7 6 27 27 H 0.96696 * 114.00272 * 299.99936 * 1 2 3 28 28 H 1.09002 * 109.47529 * 119.99813 * 2 1 3 29 29 H 1.48497 * 110.00652 * 178.68360 * 3 2 1 30 30 H 1.48506 * 109.99830 * 300.00327 * 3 2 1 31 31 H 1.07999 * 119.55362 * 0.02562 * 5 4 2 32 32 H 0.97004 * 119.99750 * 179.97438 * 8 7 6 33 33 H 1.09006 * 109.47239 * 300.00674 * 11 9 8 34 34 H 1.08997 * 109.46981 * 60.00028 * 11 9 8 35 35 H 1.08997 * 109.47415 * 59.99759 * 12 11 9 36 36 H 1.09000 * 109.47438 * 180.02562 * 12 11 9 37 37 H 1.08993 * 108.64526 * 299.35617 * 16 15 13 38 38 H 1.08998 * 108.64476 * 57.30993 * 16 15 13 39 39 H 1.09000 * 110.10257 * 146.74185 * 17 16 15 40 40 H 1.09001 * 110.10503 * 268.35699 * 17 16 15 41 41 H 1.08995 * 111.36740 * 80.61221 * 18 17 16 42 42 H 1.08994 * 111.36845 * 205.40803 * 18 17 16 43 43 H 1.09002 * 109.47643 * 60.00019 * 22 13 12 44 44 H 1.09002 * 109.47351 * 180.02562 * 22 13 12 45 45 H 1.08996 * 109.46982 * 299.98837 * 23 9 8 46 46 H 1.08992 * 109.47358 * 60.00092 * 23 9 8 47 47 H 1.08004 * 120.76038 * 179.72936 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7251 -0.0463 -2.1432 6 7 3.1709 -0.6573 -3.2250 7 6 2.8784 -1.9230 -3.4780 8 7 3.3704 -2.5276 -4.6305 9 6 4.2080 -1.7634 -5.5582 10 1 4.8314 -1.0679 -4.9962 11 6 5.0998 -2.7228 -6.3488 12 6 5.9750 -1.9247 -7.3172 13 6 5.0835 -1.1430 -8.2843 14 1 4.4602 -1.8383 -8.8466 15 7 5.9215 -0.3783 -9.2112 16 6 6.8930 0.6543 -8.8443 17 6 7.6468 1.2437 -10.0407 18 6 6.6994 1.0990 -11.2661 19 16 5.9442 -0.5344 -10.8767 20 8 6.8433 -1.6019 -11.1437 21 8 4.5796 -0.5826 -11.2700 22 6 4.1919 -0.1836 -7.4937 23 6 3.3162 -0.9821 -6.5252 24 6 2.0827 -2.6555 -2.5994 25 9 1.7847 -3.9473 -2.8598 26 6 1.6008 -2.0405 -1.4565 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5138 0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 2.9851 0.9876 -1.9701 32 1 3.1588 -3.4552 -4.8197 33 1 5.7351 -3.2795 -5.6599 34 1 4.4765 -3.4184 -6.9108 35 1 6.5982 -1.2294 -6.7549 36 1 6.6100 -2.6083 -7.8808 37 1 6.3681 1.4603 -8.3317 38 1 7.6196 0.2207 -8.1572 39 1 7.8697 2.2956 -9.8618 40 1 8.5691 0.6889 -10.2128 41 1 5.9514 1.8916 -11.2855 42 1 7.2605 1.0628 -12.1998 43 1 4.8151 0.5118 -6.9314 44 1 3.5564 0.3730 -8.1826 45 1 2.6930 -1.6776 -7.0872 46 1 2.6810 -0.2985 -5.9619 47 1 0.9782 -2.5811 -0.7590 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16729366_17656566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:29 Heat of formation + Delta-G solvation = -93.615475 kcal Electronic energy + Delta-G solvation = -32399.819814 eV Core-core repulsion = 27818.893171 eV Total energy + Delta-G solvation = -4580.926643 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.04993 -41.59439 -40.28637 -38.40653 -38.13635 -37.58563 -37.03438 -35.99787 -33.71176 -33.21895 -31.90516 -31.55014 -29.14799 -27.33282 -26.34592 -25.17215 -23.83267 -23.58189 -22.90325 -22.44196 -20.87836 -19.95864 -19.33708 -18.63800 -18.38973 -18.30702 -18.07106 -17.83425 -17.04217 -16.95435 -16.85001 -16.44553 -16.04614 -15.70769 -15.51706 -15.44607 -15.23475 -15.07765 -14.78695 -14.58322 -14.51739 -14.40071 -14.16917 -13.99102 -13.93335 -13.62741 -13.44089 -13.29343 -13.27186 -13.16067 -12.75481 -12.63297 -12.45346 -12.29019 -12.23944 -12.14715 -12.04576 -11.77354 -11.50421 -11.32251 -11.18260 -10.87178 -10.81131 -10.23743 -9.88094 -8.86466 -4.90935 -0.82792 -0.24399 0.00682 1.32610 1.42207 1.69540 1.86760 1.99731 2.39063 2.56669 2.89869 2.92036 3.09106 3.26717 3.34042 3.53336 3.59207 3.61341 3.64877 3.74040 3.87224 3.93485 3.99215 4.09055 4.10720 4.15722 4.31071 4.31742 4.37234 4.38931 4.40716 4.48225 4.57553 4.60513 4.65319 4.70725 4.87568 4.89092 4.91773 4.96589 5.01320 5.06165 5.07879 5.08688 5.26641 5.27556 5.39217 5.64419 5.87484 6.08287 6.82550 6.94883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.066 4.066 3 Si 0.772 3.228 4 C -0.172 4.172 5 C 0.128 3.872 6 N -0.524 5.524 7 C 0.382 3.618 8 N -0.710 5.710 9 C 0.161 3.839 10 H 0.087 0.913 11 C -0.121 4.121 12 C -0.120 4.120 13 C 0.184 3.816 14 H 0.076 0.924 15 N -0.984 5.984 16 C 0.069 3.931 17 C -0.123 4.123 18 C -0.556 4.556 19 S 2.541 3.459 20 O -0.996 6.996 21 O -1.005 7.005 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.032 4.032 25 F -0.136 7.136 26 C -0.038 4.038 27 H 0.405 0.595 28 H 0.100 0.900 29 H -0.281 1.281 30 H -0.294 1.294 31 H 0.158 0.842 32 H 0.417 0.583 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.978 6.637 6.215 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.177 4.177 3 Si 0.678 3.322 4 C -0.177 4.177 5 C -0.029 4.029 6 N -0.241 5.241 7 C 0.143 3.857 8 N -0.342 5.342 9 C 0.056 3.944 10 H 0.105 0.895 11 C -0.160 4.160 12 C -0.159 4.159 13 C 0.079 3.921 14 H 0.094 0.906 15 N -0.825 5.825 16 C -0.057 4.057 17 C -0.163 4.163 18 C -0.691 4.691 19 S 2.644 3.356 20 O -0.985 6.985 21 O -0.995 6.995 22 C -0.156 4.156 23 C -0.163 4.163 24 C -0.059 4.059 25 F -0.115 7.115 26 C -0.064 4.064 27 H 0.257 0.743 28 H 0.117 0.883 29 H -0.208 1.208 30 H -0.221 1.221 31 H 0.175 0.825 32 H 0.254 0.746 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.158 0.842 40 H 0.119 0.881 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.787 6.529 3.981 8.533 hybrid contribution -0.620 -1.292 0.203 1.447 sum 3.168 5.237 4.184 7.414 Atomic orbital electron populations 1.86437 1.17197 1.82470 1.51524 1.24638 0.85915 1.10948 0.96155 0.94135 0.77666 0.75221 0.85206 1.20271 1.03273 0.94498 0.99650 1.22351 0.93289 0.98969 0.88276 1.67266 1.27099 1.07877 1.21869 1.18544 0.90414 0.89030 0.87707 1.44723 1.54633 1.14811 1.20083 1.20994 0.90875 0.93362 0.89123 0.89542 1.21761 0.98255 0.97853 0.98148 1.21815 0.97988 0.99346 0.96799 1.20651 0.90040 0.91634 0.89752 0.90606 1.57017 1.51481 1.50204 1.23762 1.21800 0.92516 0.91657 0.99705 1.22578 0.97745 1.07005 0.88935 1.30606 1.12227 1.18016 1.08233 1.07074 0.74326 0.79409 0.74815 1.93602 1.67008 1.53684 1.84210 1.93548 1.35712 1.88144 1.82083 1.21775 0.97986 0.98137 0.97657 1.21875 0.98284 0.99198 0.96975 1.18144 1.07374 0.80990 0.99380 1.91478 1.92257 1.33724 1.94051 1.21475 0.95701 0.94447 0.94746 0.74332 0.88275 1.20756 1.22130 0.82518 0.74551 0.89976 0.90716 0.89728 0.90941 0.89209 0.89357 0.84233 0.88079 0.82029 0.82165 0.89917 0.91463 0.91950 0.92360 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.27 12.75 -148.98 -1.90 -0.63 16 2 C -0.07 0.18 2.83 71.24 0.20 0.39 16 3 Si 0.77 -3.47 29.82 68.60 2.05 -1.43 16 4 C -0.17 -0.64 5.43 -19.76 -0.11 -0.74 16 5 C 0.13 0.74 9.84 84.61 0.83 1.57 16 6 N -0.52 -3.97 9.20 -193.04 -1.78 -5.75 16 7 C 0.38 2.51 7.47 133.08 0.99 3.51 16 8 N -0.71 -1.89 5.22 -324.30 -1.69 -3.58 16 9 C 0.16 0.09 2.47 44.99 0.11 0.20 16 10 H 0.09 0.20 7.54 -2.39 -0.02 0.18 16 11 C -0.12 0.27 5.39 30.59 0.16 0.43 16 12 C -0.12 0.22 5.24 30.59 0.16 0.38 16 13 C 0.18 0.11 2.86 44.99 0.13 0.24 16 14 H 0.08 0.25 8.10 -2.39 -0.02 0.23 16 15 N -0.98 0.66 3.13 -493.18 -1.55 -0.88 16 16 C 0.07 -0.52 6.19 86.45 0.53 0.02 16 17 C -0.12 1.32 6.61 31.54 0.21 1.53 16 18 C -0.56 4.54 7.67 72.87 0.56 5.09 16 19 S 2.54 7.67 6.16 -56.49 -0.35 7.32 16 20 O -1.00 -10.70 18.14 -127.81 -2.32 -13.01 16 21 O -1.01 -11.57 18.04 -127.81 -2.31 -13.88 16 22 C -0.12 0.03 5.25 30.61 0.16 0.19 16 23 C -0.12 -0.20 5.51 30.61 0.17 -0.03 16 24 C -0.03 -0.21 7.35 22.58 0.17 -0.05 16 25 F -0.14 -0.94 16.65 44.97 0.75 -0.19 16 26 C -0.04 -0.17 9.75 22.48 0.22 0.05 16 27 H 0.41 -5.18 8.74 -74.06 -0.65 -5.83 16 28 H 0.10 -0.72 7.96 -2.39 -0.02 -0.74 16 29 H -0.28 -0.07 7.11 99.48 0.71 0.63 16 30 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 31 H 0.16 0.56 4.88 -2.91 -0.01 0.55 16 32 H 0.42 0.17 8.07 -92.71 -0.75 -0.58 16 33 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.08 -0.33 7.59 -2.39 -0.02 -0.35 16 36 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.09 -0.89 7.73 -2.39 -0.02 -0.91 16 38 H 0.09 -0.77 7.60 -2.39 -0.02 -0.79 16 39 H 0.14 -2.15 8.14 -2.39 -0.02 -2.17 16 40 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 41 H 0.16 -1.81 8.14 -2.39 -0.02 -1.83 16 42 H 0.16 -1.82 8.14 -2.39 -0.02 -1.84 16 43 H 0.08 -0.20 7.68 -2.39 -0.02 -0.22 16 44 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.16 0.18 8.06 -2.91 -0.02 0.15 16 Total: 0.00 -29.18 388.57 -4.94 -34.12 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.34 Total: -14.87 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 4.50 Total: 12.79 kcal Atomic # 7 Polarization: -5.20 SS G_CDS: -5.02 Total: -10.21 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -6.52 Total: -27.52 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.75 Total: -0.19 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.05 Total: -1.43 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -0.35 Total: 7.32 kcal Total: -29.18 -4.94 -34.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16729366_17656566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.497 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds