Wall clock time and date at job start Tue Mar 9 2021 13:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33331 * 125.94812 * 2 1 4 4 C 1.50693 * 122.71332 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.47439 * 330.00312 * 4 3 2 6 6 Si 1.86302 * 109.47313 * 210.00294 * 4 3 2 7 7 N 1.32122 * 114.57581 * 180.02562 * 3 2 1 8 8 C 1.29686 * 116.86538 * 359.97438 * 7 3 2 9 9 N 1.38619 * 124.94740 * 179.97438 * 8 7 3 10 10 C 1.46494 * 119.99711 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47132 * 180.02562 * 10 9 8 12 12 H 1.09005 * 112.84487 * 43.80615 * 11 10 9 13 13 C 1.53778 * 113.62052 * 174.99849 * 11 10 9 14 14 C 1.53777 * 87.08387 * 139.98141 * 13 11 10 15 15 H 1.08997 * 113.61553 * 219.94191 * 14 13 11 16 16 N 1.46504 * 113.61081 * 89.11922 * 14 13 11 17 17 C 1.36874 * 126.39529 * 120.00228 * 16 14 13 18 18 C 1.34675 * 106.81768 * 179.97438 * 17 16 14 19 19 N 1.34128 * 108.01655 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.26095 * 0.02562 * 19 18 17 21 21 C 1.53781 * 87.08156 * 334.57035 * 14 13 11 22 22 S 1.70967 * 110.10364 * 0.24846 * 8 7 3 23 23 H 1.09003 * 109.46889 * 89.99916 * 1 2 3 24 24 H 1.08993 * 109.47053 * 210.00224 * 1 2 3 25 25 H 1.09005 * 109.47008 * 329.99825 * 1 2 3 26 26 H 1.08998 * 109.47157 * 90.00386 * 4 3 2 27 27 H 0.96698 * 113.99469 * 300.00447 * 5 4 3 28 28 H 1.48496 * 109.99786 * 58.68268 * 6 4 3 29 29 H 1.48496 * 110.00001 * 180.02562 * 6 4 3 30 30 H 0.96994 * 119.99561 * 0.02562 * 9 8 7 31 31 H 1.08999 * 109.47420 * 60.00451 * 10 9 8 32 32 H 1.09004 * 109.47479 * 300.00154 * 10 9 8 33 33 H 1.09006 * 113.61083 * 25.43401 * 13 11 10 34 34 H 1.09003 * 113.69056 * 254.55090 * 13 11 10 35 35 H 1.07999 * 126.59384 * 359.97438 * 17 16 14 36 36 H 1.08002 * 125.98988 * 179.73289 * 18 17 16 37 37 H 1.08000 * 125.64975 * 180.02562 * 20 19 18 38 38 H 1.08999 * 113.61514 * 139.97842 * 21 14 13 39 39 H 1.09003 * 113.61584 * 270.88198 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4810 2.5024 -0.6726 6 14 2.9319 3.6152 -0.8779 7 7 3.5851 0.8189 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3328 -0.0019 11 6 7.0181 -2.5702 -0.0024 12 1 7.5489 -1.9199 0.6930 13 6 7.4089 -4.0525 0.1201 14 6 8.5128 -3.7654 -0.9113 15 1 8.6436 -4.5617 -1.6440 16 7 9.7769 -3.3302 -0.3122 17 6 10.9884 -3.9565 -0.4274 18 6 11.8742 -3.2239 0.2743 19 7 11.2212 -2.1784 0.8031 20 6 9.9645 -2.2356 0.4563 21 6 7.6358 -2.6048 -1.4102 22 16 2.5413 -1.4260 -0.0066 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6097 2.8212 1.0283 27 1 0.5229 2.2127 -1.5942 28 1 3.1447 3.1465 -2.2708 29 1 2.4029 5.0027 -0.8836 30 1 5.9755 -0.2620 -0.0019 31 1 5.0673 -2.7839 -0.8916 32 1 5.0685 -2.7842 0.8884 33 1 6.6417 -4.7375 -0.2408 34 1 7.7907 -4.3249 1.1040 35 1 11.1945 -4.8639 -0.9758 36 1 12.9251 -3.4423 0.3938 37 1 9.2012 -1.5249 0.7367 38 1 8.2008 -1.7072 -1.6613 39 1 6.9306 -2.8941 -2.1894 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_16945876_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:01 Heat of formation + Delta-G solvation = 117.805998 kcal Electronic energy + Delta-G solvation = -22266.180264 eV Core-core repulsion = 18918.663091 eV Total energy + Delta-G solvation = -3347.517174 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.30104 -41.07830 -40.42584 -38.07749 -36.65200 -33.61953 -32.67888 -30.36545 -29.88207 -28.38855 -27.24390 -25.67978 -24.90399 -24.11716 -22.50006 -21.94820 -21.17309 -20.48080 -19.16741 -18.08804 -17.98988 -17.44771 -16.86766 -16.73019 -16.44747 -16.11242 -15.81350 -15.67150 -15.33954 -14.94307 -14.80791 -14.65119 -14.16437 -13.96502 -13.87153 -13.77102 -13.72431 -13.44055 -13.29351 -12.78062 -12.46377 -12.28088 -12.01405 -11.99083 -11.79781 -11.13438 -10.89902 -10.62216 -10.58577 -10.47711 -10.02119 -9.48549 -8.67360 -4.67079 0.00066 0.14366 0.75752 1.03243 1.38094 1.62410 1.77872 1.82525 1.94947 2.11014 2.25535 2.86877 2.98499 3.19980 3.27434 3.30952 3.51716 3.56137 3.79450 3.85931 3.91557 4.10752 4.15810 4.22687 4.26021 4.31455 4.33493 4.48924 4.51961 4.55326 4.57604 4.73817 4.74816 4.85054 4.88325 5.07883 5.26874 5.27858 5.48362 5.78580 6.17667 6.18728 6.36488 6.92427 7.13355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.241 4.241 3 C 0.070 3.930 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.538 5.538 8 C 0.319 3.681 9 N -0.694 5.694 10 C 0.133 3.867 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.134 4.134 14 C 0.105 3.895 15 H 0.116 0.884 16 N -0.443 5.443 17 C -0.053 4.053 18 C -0.029 4.029 19 N -0.492 5.492 20 C 0.177 3.823 21 C -0.139 4.139 22 S 0.098 5.902 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.375 0.625 28 H -0.268 1.268 29 H -0.260 1.260 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.175 0.825 36 H 0.171 0.829 37 H 0.201 0.799 38 H 0.084 0.916 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.653 -5.320 -1.716 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.364 4.364 3 C -0.061 4.061 4 C -0.155 4.155 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.265 5.265 8 C -0.052 4.052 9 N -0.335 5.335 10 C 0.009 3.991 11 C -0.146 4.146 12 H 0.124 0.876 13 C -0.172 4.172 14 C 0.001 3.999 15 H 0.134 0.866 16 N -0.127 5.127 17 C -0.185 4.185 18 C -0.176 4.176 19 N -0.209 5.209 20 C -0.104 4.104 21 C -0.177 4.177 22 S 0.347 5.653 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.142 0.858 27 H 0.223 0.777 28 H -0.193 1.193 29 H -0.186 1.186 30 H 0.252 0.748 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.192 0.808 36 H 0.188 0.812 37 H 0.218 0.782 38 H 0.102 0.898 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.211 -4.898 -1.391 5.097 hybrid contribution -1.032 -0.319 -1.137 1.568 sum -1.243 -5.218 -2.528 5.930 Atomic orbital electron populations 1.20213 0.86468 1.03271 1.02583 1.25106 1.01315 0.92664 1.17314 1.20097 0.86822 0.97127 1.02026 1.24463 0.91947 0.95363 1.03710 1.86609 1.28515 1.89123 1.28872 0.93614 0.86215 0.76445 0.81571 1.65727 1.17016 1.16429 1.27291 1.23252 0.91744 0.91460 0.98754 1.43870 1.01842 1.07046 1.80744 1.21538 0.95552 0.79601 1.02455 1.22993 0.94593 0.98493 0.98518 0.87643 1.23374 0.97529 0.95859 1.00485 1.22289 0.81912 0.99037 0.96645 0.86644 1.45279 1.07873 1.20954 1.38584 1.22777 0.84827 1.02542 1.08379 1.22387 1.00239 0.93834 1.01176 1.70351 1.03659 1.23089 1.23841 1.25017 0.95947 0.92097 0.97372 1.23509 0.98497 0.98664 0.97025 1.83963 0.96648 1.10673 1.74053 0.91323 0.92131 0.88952 0.85765 0.77666 1.19274 1.18597 0.74805 0.90973 0.90905 0.87417 0.89689 0.80795 0.81189 0.78241 0.89780 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.00 8.95 36.01 0.32 0.32 16 2 C -0.24 -0.33 6.50 -36.02 -0.23 -0.57 16 3 C 0.07 0.14 5.92 -84.18 -0.50 -0.36 16 4 C -0.04 -0.04 2.82 36.00 0.10 0.06 16 5 O -0.53 -0.48 9.90 -35.23 -0.35 -0.83 16 6 Si 0.72 0.83 32.08 -169.99 -5.45 -4.63 16 7 N -0.54 -1.15 8.95 -11.36 -0.10 -1.26 16 8 C 0.32 0.20 8.24 -87.67 -0.72 -0.52 16 9 N -0.69 1.53 5.71 -62.30 -0.36 1.17 16 10 C 0.13 -0.58 5.37 -4.04 -0.02 -0.60 16 11 C -0.13 0.67 3.25 -89.81 -0.29 0.38 16 12 H 0.11 -0.53 5.64 -51.93 -0.29 -0.82 16 13 C -0.13 0.70 7.35 -25.92 -0.19 0.51 16 14 C 0.11 -0.44 4.88 -67.12 -0.33 -0.77 16 15 H 0.12 -0.61 8.14 -51.93 -0.42 -1.03 16 16 N -0.44 0.49 2.94 -110.59 -0.33 0.17 16 17 C -0.05 0.01 11.58 -16.56 -0.19 -0.18 16 18 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 19 N -0.49 -1.86 11.25 -14.66 -0.16 -2.03 16 20 C 0.18 0.10 11.19 -90.37 -1.01 -0.91 16 21 C -0.14 0.70 7.05 -25.92 -0.18 0.52 16 22 S 0.10 0.01 22.32 -107.50 -2.40 -2.39 16 23 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.09 0.05 6.61 -51.93 -0.34 -0.29 16 26 H 0.12 0.04 7.96 -51.93 -0.41 -0.38 16 27 H 0.38 -0.53 8.68 45.56 0.40 -0.13 16 28 H -0.27 -1.03 7.11 56.52 0.40 -0.63 16 29 H -0.26 -0.91 7.11 56.52 0.40 -0.50 16 30 H 0.41 -1.21 8.60 -40.82 -0.35 -1.56 16 31 H 0.07 -0.34 7.84 -51.93 -0.41 -0.75 16 32 H 0.07 -0.30 8.14 -51.93 -0.42 -0.73 16 33 H 0.11 -0.71 8.10 -51.93 -0.42 -1.13 16 34 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 35 H 0.17 -0.52 8.06 -52.49 -0.42 -0.94 16 36 H 0.17 0.03 8.06 -52.49 -0.42 -0.39 16 37 H 0.20 -0.45 5.86 -52.49 -0.31 -0.76 16 38 H 0.08 -0.32 8.02 -51.93 -0.42 -0.74 16 39 H 0.11 -0.62 7.90 -51.93 -0.41 -1.03 16 LS Contribution 334.37 15.07 5.04 5.04 Total: 0.00 -7.97 334.37 -12.70 -20.66 By element: Atomic # 1 Polarization: -8.38 SS G_CDS: -5.12 Total: -13.50 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.46 Total: -2.41 kcal Atomic # 7 Polarization: -1.00 SS G_CDS: -0.95 Total: -1.95 kcal Atomic # 8 Polarization: -0.48 SS G_CDS: -0.35 Total: -0.83 kcal Atomic # 14 Polarization: 0.83 SS G_CDS: -5.45 Total: -4.63 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.40 Total: -2.39 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -7.97 -12.70 -20.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.467 kcal (2) G-P(sol) polarization free energy of solvation -7.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds