Wall clock time and date at job start Tue Mar 9 2021 13:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33331 * 125.94812 * 2 1 4 4 C 1.50693 * 122.71332 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.47439 * 330.00312 * 4 3 2 6 6 Si 1.86302 * 109.47313 * 210.00294 * 4 3 2 7 7 N 1.32122 * 114.57581 * 180.02562 * 3 2 1 8 8 C 1.29686 * 116.86538 * 359.97438 * 7 3 2 9 9 N 1.38619 * 124.94740 * 179.97438 * 8 7 3 10 10 C 1.46494 * 119.99711 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47132 * 180.02562 * 10 9 8 12 12 H 1.09005 * 112.84487 * 43.80615 * 11 10 9 13 13 C 1.53778 * 113.62052 * 174.99849 * 11 10 9 14 14 C 1.53777 * 87.08387 * 139.98141 * 13 11 10 15 15 H 1.08997 * 113.61553 * 219.94191 * 14 13 11 16 16 N 1.46504 * 113.61081 * 89.11922 * 14 13 11 17 17 C 1.36874 * 126.39529 * 120.00228 * 16 14 13 18 18 C 1.34675 * 106.81768 * 179.97438 * 17 16 14 19 19 N 1.34128 * 108.01655 * 359.97438 * 18 17 16 20 20 C 1.30499 * 109.26095 * 0.02562 * 19 18 17 21 21 C 1.53781 * 87.08156 * 334.57035 * 14 13 11 22 22 S 1.70967 * 110.10364 * 0.24846 * 8 7 3 23 23 H 1.09003 * 109.46889 * 89.99916 * 1 2 3 24 24 H 1.08993 * 109.47053 * 210.00224 * 1 2 3 25 25 H 1.09005 * 109.47008 * 329.99825 * 1 2 3 26 26 H 1.08998 * 109.47157 * 90.00386 * 4 3 2 27 27 H 0.96698 * 113.99469 * 300.00447 * 5 4 3 28 28 H 1.48496 * 109.99786 * 58.68268 * 6 4 3 29 29 H 1.48496 * 110.00001 * 180.02562 * 6 4 3 30 30 H 0.96994 * 119.99561 * 0.02562 * 9 8 7 31 31 H 1.08999 * 109.47420 * 60.00451 * 10 9 8 32 32 H 1.09004 * 109.47479 * 300.00154 * 10 9 8 33 33 H 1.09006 * 113.61083 * 25.43401 * 13 11 10 34 34 H 1.09003 * 113.69056 * 254.55090 * 13 11 10 35 35 H 1.07999 * 126.59384 * 359.97438 * 17 16 14 36 36 H 1.08002 * 125.98988 * 179.73289 * 18 17 16 37 37 H 1.08000 * 125.64975 * 180.02562 * 20 19 18 38 38 H 1.08999 * 113.61514 * 139.97842 * 21 14 13 39 39 H 1.09003 * 113.61584 * 270.88198 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4810 2.5024 -0.6726 6 14 2.9319 3.6152 -0.8779 7 7 3.5851 0.8189 -0.0005 8 6 3.9315 -0.4309 -0.0005 9 7 5.2385 -0.8926 -0.0015 10 6 5.5066 -2.3328 -0.0019 11 6 7.0181 -2.5702 -0.0024 12 1 7.5489 -1.9199 0.6930 13 6 7.4089 -4.0525 0.1201 14 6 8.5128 -3.7654 -0.9113 15 1 8.6436 -4.5617 -1.6440 16 7 9.7769 -3.3302 -0.3122 17 6 10.9884 -3.9565 -0.4274 18 6 11.8742 -3.2239 0.2743 19 7 11.2212 -2.1784 0.8031 20 6 9.9645 -2.2356 0.4563 21 6 7.6358 -2.6048 -1.4102 22 16 2.5413 -1.4260 -0.0066 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6097 2.8212 1.0283 27 1 0.5229 2.2127 -1.5942 28 1 3.1447 3.1465 -2.2708 29 1 2.4029 5.0027 -0.8836 30 1 5.9755 -0.2620 -0.0019 31 1 5.0673 -2.7839 -0.8916 32 1 5.0685 -2.7842 0.8884 33 1 6.6417 -4.7375 -0.2408 34 1 7.7907 -4.3249 1.1040 35 1 11.1945 -4.8639 -0.9758 36 1 12.9251 -3.4423 0.3938 37 1 9.2012 -1.5249 0.7367 38 1 8.2008 -1.7072 -1.6613 39 1 6.9306 -2.8941 -2.1894 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_16945876_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:00 Heat of formation + Delta-G solvation = 121.632197 kcal Electronic energy + Delta-G solvation = -22266.014348 eV Core-core repulsion = 18918.663091 eV Total energy + Delta-G solvation = -3347.351257 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.21263 -41.07752 -40.16601 -38.07319 -36.54634 -33.55242 -32.64452 -30.33666 -29.81176 -28.26339 -26.84277 -25.66720 -24.75005 -24.03246 -22.41172 -21.85698 -21.01423 -20.40123 -19.13499 -18.08251 -17.78368 -17.33764 -16.79721 -16.54086 -16.33198 -15.93098 -15.73930 -15.67640 -15.24715 -14.88994 -14.63417 -14.54483 -14.30291 -13.87573 -13.78903 -13.58018 -13.46233 -13.38736 -13.13449 -12.80301 -12.47162 -12.07998 -11.93407 -11.68421 -11.66683 -11.03771 -10.91665 -10.64800 -10.51860 -10.50599 -10.02308 -9.47918 -8.61911 -4.79377 -0.01344 0.16374 0.74049 1.09158 1.29328 1.65699 1.80655 1.82638 1.94760 1.99973 2.19910 3.22020 3.27621 3.37341 3.53364 3.57376 3.66466 3.72131 3.97396 4.14815 4.21243 4.21713 4.33235 4.44912 4.54566 4.56299 4.61136 4.66840 4.70231 4.78540 4.80388 4.87604 4.90530 4.94910 5.08675 5.23699 5.30410 5.35048 5.63308 5.81077 6.28634 6.30035 6.43405 6.93749 7.13258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.259 4.259 3 C 0.058 3.942 4 C -0.041 4.041 5 O -0.532 6.532 6 Si 0.779 3.221 7 N -0.561 5.561 8 C 0.311 3.689 9 N -0.686 5.686 10 C 0.132 3.868 11 C -0.120 4.120 12 H 0.102 0.898 13 C -0.125 4.125 14 C 0.097 3.903 15 H 0.133 0.867 16 N -0.439 5.439 17 C -0.046 4.046 18 C -0.065 4.065 19 N -0.542 5.542 20 C 0.172 3.828 21 C -0.132 4.132 22 S 0.120 5.880 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.384 0.616 28 H -0.305 1.305 29 H -0.293 1.293 30 H 0.417 0.583 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.174 0.826 37 H 0.220 0.780 38 H 0.072 0.928 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 -6.822 -2.147 7.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.382 4.382 3 C -0.073 4.073 4 C -0.153 4.153 5 O -0.339 6.339 6 Si 0.685 3.315 7 N -0.290 5.290 8 C -0.061 4.061 9 N -0.327 5.327 10 C 0.009 3.991 11 C -0.139 4.139 12 H 0.120 0.880 13 C -0.163 4.163 14 C -0.006 4.006 15 H 0.150 0.850 16 N -0.121 5.121 17 C -0.179 4.179 18 C -0.211 4.211 19 N -0.261 5.261 20 C -0.110 4.110 21 C -0.170 4.170 22 S 0.369 5.631 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.103 0.897 26 H 0.149 0.851 27 H 0.234 0.766 28 H -0.232 1.232 29 H -0.221 1.221 30 H 0.255 0.745 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.192 0.808 37 H 0.236 0.764 38 H 0.091 0.909 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.909 -6.430 -1.818 6.744 hybrid contribution -0.805 0.107 -1.055 1.331 sum -1.713 -6.323 -2.873 7.153 Atomic orbital electron populations 1.20196 0.85787 1.03151 1.03036 1.25339 1.02077 0.93254 1.17532 1.20200 0.87081 0.97489 1.02506 1.24454 0.91720 0.95146 1.04012 1.86587 1.28485 1.89160 1.29689 0.92902 0.85478 0.73866 0.79282 1.65725 1.17205 1.17353 1.28684 1.23532 0.92860 0.91405 0.98265 1.44068 1.00989 1.08079 1.79560 1.21680 0.96106 0.78310 1.03028 1.22917 0.93902 0.98630 0.98435 0.88038 1.23368 0.97384 0.95996 0.99565 1.22584 0.80868 0.99875 0.97305 0.84965 1.45462 1.08697 1.20183 1.37794 1.23183 0.84656 1.02762 1.07297 1.22665 1.01155 0.94556 1.02757 1.70273 1.05435 1.24658 1.25759 1.25355 0.95539 0.92834 0.97241 1.23501 0.98309 0.97845 0.97357 1.83780 0.95811 1.09630 1.73865 0.90563 0.91625 0.89654 0.85107 0.76626 1.23196 1.22112 0.74466 0.89923 0.90687 0.85373 0.90938 0.78095 0.80844 0.76391 0.90910 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.95 71.24 0.64 0.66 16 2 C -0.26 -0.67 6.50 24.58 0.16 -0.51 16 3 C 0.06 0.24 5.92 41.40 0.25 0.48 16 4 C -0.04 -0.10 2.82 71.23 0.20 0.10 16 5 O -0.53 -1.14 9.90 -148.98 -1.47 -2.62 16 6 Si 0.78 2.62 32.08 68.60 2.20 4.82 16 7 N -0.56 -2.47 8.95 -189.86 -1.70 -4.17 16 8 C 0.31 0.24 8.24 179.32 1.48 1.72 16 9 N -0.69 3.55 5.71 -351.00 -2.01 1.55 16 10 C 0.13 -1.35 5.37 86.38 0.46 -0.89 16 11 C -0.12 1.42 3.25 -10.27 -0.03 1.38 16 12 H 0.10 -1.09 5.64 -2.38 -0.01 -1.10 16 13 C -0.12 1.51 7.35 31.12 0.23 1.74 16 14 C 0.10 -0.96 4.88 45.52 0.22 -0.74 16 15 H 0.13 -1.71 8.14 -2.39 -0.02 -1.73 16 16 N -0.44 1.18 2.94 -503.81 -1.48 -0.30 16 17 C -0.05 0.03 11.58 83.09 0.96 0.99 16 18 C -0.06 -0.34 11.87 83.52 0.99 0.66 16 19 N -0.54 -4.90 11.25 -200.30 -2.25 -7.15 16 20 C 0.17 0.28 11.19 180.26 2.02 2.29 16 21 C -0.13 1.53 7.05 31.12 0.22 1.75 16 22 S 0.12 -0.07 22.32 -56.49 -1.26 -1.33 16 23 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.08 0.10 6.61 -2.38 -0.02 0.08 16 26 H 0.13 0.11 7.96 -2.39 -0.02 0.09 16 27 H 0.38 -0.93 8.68 -74.06 -0.64 -1.57 16 28 H -0.30 -2.87 7.11 99.48 0.71 -2.16 16 29 H -0.29 -2.51 7.11 99.48 0.71 -1.80 16 30 H 0.42 -2.63 8.60 -92.71 -0.80 -3.42 16 31 H 0.08 -0.97 7.84 -2.39 -0.02 -0.99 16 32 H 0.07 -0.75 8.14 -2.38 -0.02 -0.77 16 33 H 0.13 -2.04 8.10 -2.38 -0.02 -2.06 16 34 H 0.07 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.20 -1.47 8.06 -2.91 -0.02 -1.49 16 36 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 37 H 0.22 -0.92 5.86 -2.91 -0.02 -0.93 16 38 H 0.07 -0.61 8.02 -2.39 -0.02 -0.63 16 39 H 0.12 -1.70 7.90 -2.39 -0.02 -1.72 16 Total: 0.00 -19.87 334.37 -0.49 -20.37 By element: Atomic # 1 Polarization: -20.48 SS G_CDS: -0.31 Total: -20.80 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 7.79 Total: 9.63 kcal Atomic # 7 Polarization: -2.64 SS G_CDS: -7.44 Total: -10.08 kcal Atomic # 8 Polarization: -1.14 SS G_CDS: -1.47 Total: -2.62 kcal Atomic # 14 Polarization: 2.62 SS G_CDS: 2.20 Total: 4.82 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.26 Total: -1.33 kcal Total: -19.87 -0.49 -20.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_16945876_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.999 kcal (2) G-P(sol) polarization free energy of solvation -19.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds