Wall clock time and date at job start Tue Mar 9 2021 13:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33330 * 125.94981 * 2 1 4 4 C 1.50702 * 122.71080 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46987 * 44.62494 * 4 3 2 6 6 Si 1.86294 * 109.47141 * 164.62674 * 4 3 2 7 7 N 1.32118 * 114.58260 * 180.02562 * 3 2 1 8 8 C 1.29687 * 116.86122 * 359.97438 * 7 3 2 9 9 N 1.38619 * 124.94724 * 179.97438 * 8 7 3 10 10 C 1.47539 * 111.00167 * 161.90429 * 9 8 7 11 11 C 1.53559 * 87.99084 * 221.57536 * 10 9 8 12 12 C 1.47163 * 110.99956 * 66.01829 * 9 8 7 13 13 C 1.52842 * 113.46978 * 253.32388 * 12 9 8 14 14 C 1.53115 * 109.22810 * 187.26419 * 13 12 9 15 15 C 1.52965 * 109.44673 * 302.00624 * 14 13 12 16 16 C 1.52999 * 109.43703 * 181.69161 * 15 14 13 17 17 C 1.52965 * 109.68486 * 61.62432 * 15 14 13 18 18 C 1.52842 * 113.46305 * 23.63949 * 12 9 8 19 19 S 1.70962 * 110.10588 * 0.24467 * 8 7 3 20 20 H 1.08996 * 109.47562 * 84.02213 * 1 2 3 21 21 H 1.09007 * 109.46908 * 204.02535 * 1 2 3 22 22 H 1.09005 * 109.47461 * 324.01870 * 1 2 3 23 23 H 1.08998 * 109.47200 * 284.62580 * 4 3 2 24 24 H 0.96699 * 113.99810 * 59.99993 * 5 4 3 25 25 H 1.48504 * 109.99954 * 180.02562 * 6 4 3 26 26 H 1.48501 * 110.00154 * 301.31645 * 6 4 3 27 27 H 1.09006 * 113.45915 * 336.35407 * 10 9 8 28 28 H 1.08996 * 113.46327 * 106.73147 * 10 9 8 29 29 H 1.08999 * 114.18079 * 272.15495 * 11 10 9 30 30 H 1.08995 * 114.18121 * 139.40586 * 11 10 9 31 31 H 1.09002 * 109.50967 * 67.33417 * 13 12 9 32 32 H 1.09001 * 109.54974 * 307.21717 * 13 12 9 33 33 H 1.08996 * 109.47570 * 182.01411 * 14 13 12 34 34 H 1.08999 * 109.48185 * 61.99940 * 14 13 12 35 35 H 1.09004 * 109.43693 * 301.55683 * 15 14 13 36 36 H 1.09000 * 109.47386 * 59.99938 * 16 15 14 37 37 H 1.09005 * 109.47588 * 179.97438 * 16 15 14 38 38 H 1.08999 * 109.47208 * 299.99847 * 16 15 14 39 39 H 1.09003 * 109.47424 * 58.37389 * 17 15 14 40 40 H 1.09000 * 109.47314 * 178.38292 * 17 15 14 41 41 H 1.08998 * 109.51227 * 292.66636 * 18 12 9 42 42 H 1.09007 * 109.50538 * 52.75872 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.6752 2.5775 0.9474 6 14 3.0930 3.6776 0.4660 7 7 3.5850 0.8189 -0.0005 8 6 3.9314 -0.4308 -0.0005 9 7 5.2385 -0.8924 -0.0015 10 6 5.3014 -2.3029 0.4267 11 6 6.5461 -1.9411 1.2501 12 6 5.9228 -0.5412 1.2531 13 6 6.9486 0.5806 1.0935 14 6 7.7258 0.7432 2.4027 15 6 6.7491 1.0433 3.5409 16 6 7.5295 1.2474 4.8410 17 6 5.7780 -0.1266 3.7085 18 6 4.9670 -0.3043 2.4220 19 16 2.5413 -1.4260 -0.0065 20 1 -0.3634 0.1070 -1.0220 21 1 -0.3633 -0.9387 0.4184 22 1 -0.3634 0.8316 0.6038 23 1 1.3671 2.7273 -0.9936 24 1 0.9365 2.3729 1.8556 25 1 2.5647 5.0655 0.4708 26 1 3.6335 3.3359 1.8063 27 1 4.4516 -2.6096 1.0366 28 1 5.5061 -2.9956 -0.3896 29 1 7.4830 -2.0116 0.6975 30 1 6.5855 -2.4144 2.2311 31 1 6.4351 1.5125 0.8568 32 1 7.6397 0.3311 0.2883 33 1 8.4340 1.5660 2.3051 34 1 8.2665 -0.1777 2.6212 35 1 6.1890 1.9492 3.3089 36 1 8.2189 2.0835 4.7235 37 1 6.8340 1.4618 5.6525 38 1 8.0915 0.3429 5.0732 39 1 6.3392 -1.0383 3.9132 40 1 5.1021 0.0782 4.5388 41 1 4.3790 0.5942 2.2352 42 1 4.3003 -1.1605 2.5262 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17514092_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:10 Heat of formation + Delta-G solvation = 45.325872 kcal Electronic energy + Delta-G solvation = -23400.370522 eV Core-core repulsion = 20281.476858 eV Total energy + Delta-G solvation = -3118.893664 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.93951 -40.77624 -38.26932 -37.58870 -33.65246 -32.20613 -31.91917 -30.79105 -28.68160 -26.95102 -25.71371 -24.40060 -23.98614 -23.38583 -21.42612 -20.38846 -19.69074 -18.88998 -18.05269 -17.60337 -17.12014 -16.56272 -15.98232 -15.73331 -15.33467 -15.28107 -15.16731 -14.77244 -14.40542 -14.10695 -14.07215 -13.74881 -13.58607 -13.44692 -13.32552 -13.15815 -12.95224 -12.87635 -12.77886 -12.43893 -12.25702 -12.09386 -11.84767 -11.65050 -11.60311 -11.36266 -11.08993 -10.90812 -10.55352 -10.46011 -10.11109 -9.18496 -4.68137 -0.30592 0.13980 0.62442 1.35286 1.70056 1.84033 2.05158 2.33673 3.14032 3.18847 3.32547 3.46824 3.70827 3.73279 3.81199 3.94106 3.95937 4.04333 4.18572 4.20984 4.31616 4.34283 4.45152 4.49011 4.52753 4.54273 4.63853 4.65315 4.68177 4.75840 4.85258 4.87967 4.89224 4.95391 4.98949 5.01001 5.08827 5.18440 5.21067 5.23986 5.30018 5.34799 5.51093 5.75312 6.27716 6.75577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.202 4.202 3 C 0.037 3.963 4 C -0.041 4.041 5 O -0.525 6.525 6 Si 0.719 3.281 7 N -0.472 5.472 8 C 0.207 3.793 9 N -0.383 5.383 10 C -0.007 4.007 11 C -0.132 4.132 12 C 0.083 3.917 13 C -0.096 4.096 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.148 4.148 17 C -0.106 4.106 18 C -0.126 4.126 19 S 0.102 5.898 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.101 0.899 23 H 0.123 0.877 24 H 0.376 0.624 25 H -0.262 1.262 26 H -0.264 1.264 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -2.893 1.557 3.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.324 4.324 3 C -0.094 4.094 4 C -0.153 4.153 5 O -0.331 6.331 6 Si 0.620 3.380 7 N -0.192 5.192 8 C -0.162 4.162 9 N -0.102 5.102 10 C -0.136 4.136 11 C -0.170 4.170 12 C -0.007 4.007 13 C -0.134 4.134 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.205 4.205 17 C -0.144 4.144 18 C -0.165 4.165 19 S 0.356 5.644 20 H 0.093 0.907 21 H 0.083 0.917 22 H 0.119 0.881 23 H 0.141 0.859 24 H 0.224 0.776 25 H -0.188 1.188 26 H -0.188 1.188 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.121 -2.605 0.898 3.477 hybrid contribution -1.397 -0.029 1.208 1.847 sum 0.724 -2.634 2.106 3.449 Atomic orbital electron populations 1.20439 0.86340 1.03849 1.03637 1.25490 1.01683 0.93441 1.11805 1.20315 0.87069 0.97503 1.04524 1.24500 0.98388 0.95440 0.97016 1.86561 1.34796 1.91345 1.20370 0.93498 0.81900 0.75738 0.86864 1.65824 1.16495 1.17299 1.19549 1.25724 0.95813 0.91889 1.02736 1.65913 1.05415 1.06555 1.32345 1.24127 0.99536 0.89802 1.00178 1.23284 0.97804 0.94789 1.01116 1.22592 0.94310 0.96957 0.86835 1.21399 0.96438 0.97791 0.97806 1.21579 0.97544 1.02070 0.93698 1.21141 0.96371 0.98399 0.95369 1.21832 1.00106 1.01808 0.96795 1.21521 0.97785 0.98900 0.96229 1.21883 0.97517 1.02644 0.94430 1.84157 0.98273 1.11536 1.70459 0.90681 0.91670 0.88050 0.85885 0.77642 1.18779 1.18795 0.89879 0.87747 0.87756 0.89252 0.90767 0.90700 0.91307 0.91651 0.91256 0.92499 0.92771 0.92571 0.91475 0.91668 0.90403 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 9.97 36.00 0.36 0.35 16 2 C -0.20 -0.32 6.49 -36.02 -0.23 -0.55 16 3 C 0.04 0.08 6.00 -84.18 -0.50 -0.43 16 4 C -0.04 -0.05 2.73 36.01 0.10 0.05 16 5 O -0.53 -0.49 10.24 -35.23 -0.36 -0.85 16 6 Si 0.72 1.04 31.88 -169.99 -5.42 -4.37 16 7 N -0.47 -1.36 7.56 -11.36 -0.09 -1.44 16 8 C 0.21 0.44 5.06 -87.67 -0.44 0.00 16 9 N -0.38 -0.47 6.31 -171.12 -1.08 -1.55 16 10 C -0.01 0.01 6.79 -7.96 -0.05 -0.05 16 11 C -0.13 0.25 7.13 -26.32 -0.19 0.06 16 12 C 0.08 -0.01 0.72 -136.27 -0.10 -0.11 16 13 C -0.10 -0.01 5.39 -26.75 -0.14 -0.15 16 14 C -0.11 0.11 5.12 -26.69 -0.14 -0.03 16 15 C -0.09 0.05 2.67 -90.66 -0.24 -0.20 16 16 C -0.15 0.14 9.19 37.16 0.34 0.48 16 17 C -0.11 0.08 5.11 -26.69 -0.14 -0.06 16 18 C -0.13 -0.02 3.84 -26.75 -0.10 -0.12 16 19 S 0.10 0.11 21.04 -107.50 -2.26 -2.16 16 20 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 21 H 0.06 -0.05 8.14 -51.92 -0.42 -0.47 16 22 H 0.10 0.01 5.70 -51.93 -0.30 -0.29 16 23 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 24 H 0.38 -0.53 8.70 45.56 0.40 -0.14 16 25 H -0.26 -0.99 7.11 56.52 0.40 -0.58 16 26 H -0.26 -0.98 7.11 56.52 0.40 -0.57 16 27 H 0.08 -0.12 5.83 -51.93 -0.30 -0.42 16 28 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.10 -0.24 8.10 -51.93 -0.42 -0.66 16 30 H 0.09 -0.25 7.35 -51.93 -0.38 -0.64 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.00 8.12 -51.93 -0.42 -0.42 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.06 -0.10 7.94 -51.93 -0.41 -0.51 16 35 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.07 -0.10 7.35 -51.93 -0.38 -0.48 16 40 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.08 0.18 6.80 -51.93 -0.35 -0.18 16 42 H 0.06 0.00 6.92 -51.93 -0.36 -0.36 16 LS Contribution 329.64 15.07 4.97 4.97 Total: 0.00 -3.84 329.64 -12.50 -16.33 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: -6.77 Total: -10.18 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.48 Total: -0.75 kcal Atomic # 7 Polarization: -1.83 SS G_CDS: -1.17 Total: -2.99 kcal Atomic # 8 Polarization: -0.49 SS G_CDS: -0.36 Total: -0.85 kcal Atomic # 14 Polarization: 1.04 SS G_CDS: -5.42 Total: -4.37 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.26 Total: -2.16 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -3.84 -12.50 -16.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17514092_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.661 kcal (2) G-P(sol) polarization free energy of solvation -3.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds