Wall clock time and date at job start Tue Mar 9 2021 13:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33330 * 125.94981 * 2 1 4 4 C 1.50702 * 122.71080 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46987 * 44.62494 * 4 3 2 6 6 Si 1.86294 * 109.47141 * 164.62674 * 4 3 2 7 7 N 1.32118 * 114.58260 * 180.02562 * 3 2 1 8 8 C 1.29687 * 116.86122 * 359.97438 * 7 3 2 9 9 N 1.38619 * 124.94724 * 179.97438 * 8 7 3 10 10 C 1.47539 * 111.00167 * 161.90429 * 9 8 7 11 11 C 1.53559 * 87.99084 * 221.57536 * 10 9 8 12 12 C 1.47163 * 110.99956 * 66.01829 * 9 8 7 13 13 C 1.52842 * 113.46978 * 253.32388 * 12 9 8 14 14 C 1.53115 * 109.22810 * 187.26419 * 13 12 9 15 15 C 1.52965 * 109.44673 * 302.00624 * 14 13 12 16 16 C 1.52999 * 109.43703 * 181.69161 * 15 14 13 17 17 C 1.52965 * 109.68486 * 61.62432 * 15 14 13 18 18 C 1.52842 * 113.46305 * 23.63949 * 12 9 8 19 19 S 1.70962 * 110.10588 * 0.24467 * 8 7 3 20 20 H 1.08996 * 109.47562 * 84.02213 * 1 2 3 21 21 H 1.09007 * 109.46908 * 204.02535 * 1 2 3 22 22 H 1.09005 * 109.47461 * 324.01870 * 1 2 3 23 23 H 1.08998 * 109.47200 * 284.62580 * 4 3 2 24 24 H 0.96699 * 113.99810 * 59.99993 * 5 4 3 25 25 H 1.48504 * 109.99954 * 180.02562 * 6 4 3 26 26 H 1.48501 * 110.00154 * 301.31645 * 6 4 3 27 27 H 1.09006 * 113.45915 * 336.35407 * 10 9 8 28 28 H 1.08996 * 113.46327 * 106.73147 * 10 9 8 29 29 H 1.08999 * 114.18079 * 272.15495 * 11 10 9 30 30 H 1.08995 * 114.18121 * 139.40586 * 11 10 9 31 31 H 1.09002 * 109.50967 * 67.33417 * 13 12 9 32 32 H 1.09001 * 109.54974 * 307.21717 * 13 12 9 33 33 H 1.08996 * 109.47570 * 182.01411 * 14 13 12 34 34 H 1.08999 * 109.48185 * 61.99940 * 14 13 12 35 35 H 1.09004 * 109.43693 * 301.55683 * 15 14 13 36 36 H 1.09000 * 109.47386 * 59.99938 * 16 15 14 37 37 H 1.09005 * 109.47588 * 179.97438 * 16 15 14 38 38 H 1.08999 * 109.47208 * 299.99847 * 16 15 14 39 39 H 1.09003 * 109.47424 * 58.37389 * 17 15 14 40 40 H 1.09000 * 109.47314 * 178.38292 * 17 15 14 41 41 H 1.08998 * 109.51227 * 292.66636 * 18 12 9 42 42 H 1.09007 * 109.50538 * 52.75872 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.6752 2.5775 0.9474 6 14 3.0930 3.6776 0.4660 7 7 3.5850 0.8189 -0.0005 8 6 3.9314 -0.4308 -0.0005 9 7 5.2385 -0.8924 -0.0015 10 6 5.3014 -2.3029 0.4267 11 6 6.5461 -1.9411 1.2501 12 6 5.9228 -0.5412 1.2531 13 6 6.9486 0.5806 1.0935 14 6 7.7258 0.7432 2.4027 15 6 6.7491 1.0433 3.5409 16 6 7.5295 1.2474 4.8410 17 6 5.7780 -0.1266 3.7085 18 6 4.9670 -0.3043 2.4220 19 16 2.5413 -1.4260 -0.0065 20 1 -0.3634 0.1070 -1.0220 21 1 -0.3633 -0.9387 0.4184 22 1 -0.3634 0.8316 0.6038 23 1 1.3671 2.7273 -0.9936 24 1 0.9365 2.3729 1.8556 25 1 2.5647 5.0655 0.4708 26 1 3.6335 3.3359 1.8063 27 1 4.4516 -2.6096 1.0366 28 1 5.5061 -2.9956 -0.3896 29 1 7.4830 -2.0116 0.6975 30 1 6.5855 -2.4144 2.2311 31 1 6.4351 1.5125 0.8568 32 1 7.6397 0.3311 0.2883 33 1 8.4340 1.5660 2.3051 34 1 8.2665 -0.1777 2.6212 35 1 6.1890 1.9492 3.3089 36 1 8.2189 2.0835 4.7235 37 1 6.8340 1.4618 5.6525 38 1 8.0915 0.3429 5.0732 39 1 6.3392 -1.0383 3.9132 40 1 5.1021 0.0782 4.5388 41 1 4.3790 0.5942 2.2352 42 1 4.3003 -1.1605 2.5262 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17514092_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:09 Heat of formation + Delta-G solvation = 51.999111 kcal Electronic energy + Delta-G solvation = -23400.081148 eV Core-core repulsion = 20281.476858 eV Total energy + Delta-G solvation = -3118.604291 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92510 -40.85702 -38.26674 -37.65666 -33.69231 -32.19594 -31.90778 -30.77567 -28.73372 -26.89571 -25.77119 -24.41026 -23.99149 -23.35147 -21.39936 -20.43903 -19.72238 -18.91845 -18.13587 -17.63116 -17.13000 -16.60106 -16.03002 -15.82454 -15.33225 -15.26383 -15.17976 -14.77586 -14.46316 -14.25494 -14.03705 -13.75616 -13.61733 -13.42930 -13.31142 -13.10921 -12.94744 -12.86655 -12.74736 -12.47666 -12.35585 -12.08480 -11.99624 -11.63547 -11.60129 -11.34087 -11.06931 -10.93950 -10.65998 -10.52483 -10.19166 -9.24919 -4.85913 -0.39475 0.06703 0.53198 1.21411 1.56366 1.63860 1.83943 2.33631 3.14162 3.25052 3.29343 3.48978 3.73054 3.80589 3.81474 3.96107 3.98789 4.09176 4.17350 4.21114 4.33515 4.37401 4.46282 4.48680 4.54679 4.58937 4.66904 4.70579 4.78852 4.80665 4.88458 4.91052 4.92047 4.96473 5.00575 5.08664 5.12617 5.19426 5.20930 5.24680 5.34838 5.38078 5.52679 5.74632 6.28027 6.67370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.211 4.211 3 C 0.026 3.974 4 C -0.035 4.035 5 O -0.530 6.530 6 Si 0.766 3.234 7 N -0.493 5.493 8 C 0.198 3.802 9 N -0.400 5.400 10 C -0.009 4.009 11 C -0.120 4.120 12 C 0.080 3.920 13 C -0.094 4.094 14 C -0.105 4.105 15 C -0.093 4.093 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.119 4.119 19 S 0.123 5.877 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.101 0.899 23 H 0.133 0.867 24 H 0.385 0.615 25 H -0.292 1.292 26 H -0.299 1.299 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 -4.407 1.680 5.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.333 4.333 3 C -0.105 4.105 4 C -0.148 4.148 5 O -0.337 6.337 6 Si 0.672 3.328 7 N -0.213 5.213 8 C -0.170 4.170 9 N -0.121 5.121 10 C -0.137 4.137 11 C -0.158 4.158 12 C -0.010 4.010 13 C -0.133 4.133 14 C -0.143 4.143 15 C -0.112 4.112 16 C -0.203 4.203 17 C -0.141 4.141 18 C -0.158 4.158 19 S 0.377 5.623 20 H 0.096 0.904 21 H 0.092 0.908 22 H 0.119 0.881 23 H 0.150 0.850 24 H 0.234 0.766 25 H -0.220 1.220 26 H -0.225 1.225 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.452 -4.129 1.016 4.908 hybrid contribution -1.485 0.464 1.204 1.967 sum 0.967 -3.664 2.220 4.392 Atomic orbital electron populations 1.20461 0.85338 1.04311 1.03885 1.25733 1.02478 0.93621 1.11468 1.20411 0.87071 0.97955 1.05079 1.24425 0.97986 0.94852 0.97513 1.86537 1.34754 1.91311 1.21084 0.92878 0.81090 0.73708 0.85119 1.65814 1.17001 1.18103 1.20340 1.25938 0.96564 0.91985 1.02540 1.65945 1.05106 1.07984 1.33016 1.24227 1.00058 0.88762 1.00685 1.23296 0.97663 0.92921 1.01889 1.22637 0.94149 0.97942 0.86228 1.21368 0.96499 0.96962 0.98429 1.21544 0.97238 1.02734 0.92820 1.21108 0.96469 0.97678 0.95948 1.21809 0.99985 1.02231 0.96262 1.21511 0.97651 0.99342 0.95604 1.21789 0.97504 1.01451 0.95084 1.83983 0.97443 1.10825 1.70091 0.90350 0.90768 0.88114 0.84950 0.76577 1.22018 1.22541 0.89543 0.86841 0.86952 0.87691 0.93070 0.90556 0.91318 0.90229 0.93457 0.92602 0.93062 0.91603 0.89887 0.91998 0.92980 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.01 9.97 71.24 0.71 0.72 16 2 C -0.21 -0.71 6.49 24.57 0.16 -0.55 16 3 C 0.03 0.13 6.00 41.41 0.25 0.38 16 4 C -0.03 -0.11 2.73 71.24 0.19 0.09 16 5 O -0.53 -1.31 10.24 -148.98 -1.53 -2.84 16 6 Si 0.77 3.78 31.88 68.60 2.19 5.97 16 7 N -0.49 -3.45 7.56 -189.85 -1.44 -4.89 16 8 C 0.20 0.97 5.06 179.32 0.91 1.88 16 9 N -0.40 -1.06 6.31 -695.31 -4.39 -5.45 16 10 C -0.01 0.03 6.79 83.27 0.57 0.59 16 11 C -0.12 0.61 7.13 30.86 0.22 0.83 16 12 C 0.08 -0.01 0.72 0.36 0.00 -0.01 16 13 C -0.09 -0.09 5.39 30.58 0.16 0.08 16 14 C -0.11 0.19 5.12 30.62 0.16 0.35 16 15 C -0.09 0.02 2.67 -10.82 -0.03 0.00 16 16 C -0.15 0.26 9.19 71.98 0.66 0.92 16 17 C -0.10 0.15 5.11 30.62 0.16 0.30 16 18 C -0.12 -0.11 3.84 30.58 0.12 0.01 16 19 S 0.12 0.25 21.04 -56.49 -1.19 -0.94 16 20 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 21 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 22 H 0.10 0.01 5.70 -2.38 -0.01 -0.01 16 23 H 0.13 0.15 7.96 -2.39 -0.02 0.13 16 24 H 0.39 -0.74 8.70 -74.06 -0.64 -1.38 16 25 H -0.29 -2.86 7.11 99.48 0.71 -2.15 16 26 H -0.30 -3.18 7.11 99.48 0.71 -2.47 16 27 H 0.09 -0.33 5.83 -2.38 -0.01 -0.34 16 28 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 30 H 0.10 -0.84 7.35 -2.39 -0.02 -0.85 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.08 0.03 8.12 -2.39 -0.02 0.01 16 33 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.08 -0.34 7.94 -2.39 -0.02 -0.36 16 35 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.05 -0.06 8.14 -2.38 -0.02 -0.08 16 38 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.08 -0.36 7.35 -2.39 -0.02 -0.38 16 40 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.05 0.34 6.80 -2.39 -0.02 0.32 16 42 H 0.06 0.01 6.92 -2.38 -0.02 -0.01 16 Total: 0.00 -10.08 329.64 -1.71 -11.79 By element: Atomic # 1 Polarization: -9.62 SS G_CDS: 0.40 Total: -9.22 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.23 Total: 5.57 kcal Atomic # 7 Polarization: -4.51 SS G_CDS: -5.82 Total: -10.33 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -1.53 Total: -2.84 kcal Atomic # 14 Polarization: 3.78 SS G_CDS: 2.19 Total: 5.97 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.19 Total: -0.94 kcal Total: -10.08 -1.71 -11.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17514092_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.789 kcal (2) G-P(sol) polarization free energy of solvation -10.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds