Wall clock time and date at job start Tue Mar 9 2021 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52970 * 109.43685 * 2 1 4 4 C 1.53125 * 109.44196 * 178.30729 * 3 2 1 5 5 C 1.52838 * 109.21904 * 58.00519 * 4 3 2 6 6 C 1.53222 * 113.46844 * 172.70626 * 5 4 3 7 7 C 1.53561 * 83.49598 * 219.31998 * 6 5 4 8 8 N 1.47181 * 113.40752 * 73.98120 * 5 4 3 9 9 C 1.39140 * 111.00234 * 253.37324 * 8 5 4 10 10 N 1.32344 * 119.71635 * 291.82009 * 9 8 5 11 11 C 1.32007 * 121.64588 * 180.26553 * 10 9 8 12 12 C 1.37982 * 120.89989 * 359.72662 * 11 10 9 13 13 C 1.50707 * 120.32702 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.46993 * 119.97839 * 13 12 11 15 15 Si 1.86297 * 109.46782 * 359.97438 * 13 12 11 16 16 C 1.38902 * 119.34868 * 0.02562 * 12 11 10 17 17 C 1.38445 * 118.48515 * 359.97438 * 16 12 11 18 18 F 1.35095 * 120.47262 * 179.97438 * 17 16 12 19 19 C 1.52835 * 112.69763 * 303.40691 * 5 4 3 20 20 C 1.52968 * 109.43992 * 239.77556 * 2 1 3 21 21 H 1.08999 * 109.47097 * 60.00362 * 1 2 3 22 22 H 1.09007 * 109.46871 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47346 * 300.00097 * 1 2 3 24 24 H 1.09004 * 109.39773 * 119.88467 * 2 1 3 25 25 H 1.09001 * 109.47923 * 58.30963 * 3 2 1 26 26 H 1.09004 * 109.47573 * 298.29522 * 3 2 1 27 27 H 1.08993 * 109.51206 * 298.07797 * 4 3 2 28 28 H 1.09007 * 109.55130 * 177.95103 * 4 3 2 29 29 H 1.08992 * 114.18110 * 332.94470 * 6 5 4 30 30 H 1.08997 * 114.18060 * 105.50039 * 6 5 4 31 31 H 1.09005 * 113.46901 * 271.00552 * 7 6 5 32 32 H 1.08998 * 113.46878 * 140.56277 * 7 6 5 33 33 H 1.08003 * 119.55168 * 179.70751 * 11 10 9 34 34 H 1.09000 * 109.47003 * 239.98192 * 13 12 11 35 35 H 0.96696 * 114.00119 * 299.99629 * 14 13 12 36 36 H 1.48505 * 109.99776 * 180.02562 * 15 13 12 37 37 H 1.48506 * 110.00160 * 301.31732 * 15 13 12 38 38 H 1.08001 * 120.75815 * 180.02562 * 16 12 11 39 39 H 1.08991 * 109.51355 * 176.50442 * 19 5 4 40 40 H 1.09003 * 109.51167 * 296.65889 * 19 5 4 41 41 H 1.09009 * 109.47269 * 301.67759 * 20 2 1 42 42 H 1.09001 * 109.47099 * 61.68383 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0390 1.4425 0.0000 4 6 3.5696 1.4429 0.0427 5 6 4.1066 0.6663 -1.1593 6 6 5.6287 0.7539 -1.3118 7 6 5.2982 0.8474 -2.8085 8 7 3.9823 1.3973 -2.4306 9 6 2.9711 0.8577 -3.2194 10 7 3.1185 -0.3505 -3.7390 11 6 2.1860 -0.8971 -4.4969 12 6 1.0127 -0.2251 -4.7720 13 6 -0.0435 -0.8615 -5.6383 14 8 -1.2569 -0.9886 -4.8943 15 14 0.5319 -2.5483 -6.1809 16 6 0.8146 1.0437 -4.2425 17 6 1.8097 1.5918 -3.4513 18 9 1.6593 2.8231 -2.9163 19 6 3.5697 -0.7631 -1.2256 20 6 2.0391 -0.7261 -1.2464 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8920 -0.5123 0.8915 25 1 1.6509 1.9649 0.8744 26 1 1.7005 1.9473 -0.9049 27 1 3.9083 0.9683 0.9636 28 1 3.9354 2.4691 0.0060 29 1 6.0678 1.6598 -0.8941 30 1 6.1592 -0.1538 -1.0243 31 1 5.2377 -0.1231 -3.3011 32 1 5.9261 1.5562 -3.3483 33 1 2.3437 -1.8835 -4.9074 34 1 -0.2185 -0.2380 -6.5151 35 1 -1.1753 -1.5318 -4.0985 36 1 -0.5007 -3.1863 -7.0365 37 1 1.8098 -2.4329 -6.9285 38 1 -0.0954 1.5899 -4.4429 39 1 3.9345 -1.2474 -2.1312 40 1 3.9085 -1.3202 -0.3521 41 1 1.6511 -1.7448 -1.2574 42 1 1.7003 -0.1985 -2.1380 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17514092_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:14 Heat of formation + Delta-G solvation = 24.482725 kcal Electronic energy + Delta-G solvation = -26221.210519 eV Core-core repulsion = 22698.344426 eV Total energy + Delta-G solvation = -3522.866094 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90329 -43.38371 -40.72381 -38.03631 -37.81910 -34.01215 -32.96062 -31.80570 -31.70025 -29.76695 -26.63421 -26.27217 -25.15668 -23.89031 -23.11038 -23.01735 -21.18300 -20.13781 -19.13307 -18.38126 -18.20982 -17.60612 -16.96012 -16.57631 -16.26018 -16.15642 -15.92116 -15.50333 -15.44550 -15.24831 -14.85845 -14.55572 -14.26868 -14.05824 -13.78104 -13.61521 -13.41670 -13.19589 -12.97162 -12.82683 -12.58870 -12.47556 -12.24271 -12.16994 -12.14250 -11.83918 -11.41643 -11.32286 -10.97993 -10.86504 -10.72795 -10.51215 -10.25564 -9.57310 -5.20710 -0.39006 -0.12161 1.07328 1.46541 1.82242 2.24331 2.45508 2.97243 3.11483 3.27412 3.37638 3.39601 3.58373 3.67520 3.71985 3.80626 3.97747 4.02407 4.10901 4.21134 4.23828 4.33799 4.38904 4.44700 4.53208 4.57419 4.60215 4.68586 4.73796 4.76418 4.78386 4.84758 4.87331 4.94463 5.02511 5.08293 5.12734 5.17277 5.21075 5.28447 5.33217 5.40705 5.47207 5.54713 6.09499 6.35991 6.52878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.097 4.097 5 C 0.075 3.925 6 C -0.138 4.138 7 C 0.004 3.996 8 N -0.424 5.424 9 C 0.262 3.738 10 N -0.474 5.474 11 C 0.102 3.898 12 C -0.151 4.151 13 C -0.063 4.063 14 O -0.535 6.535 15 Si 0.688 3.312 16 C -0.081 4.081 17 C 0.076 3.924 18 F -0.114 7.114 19 C -0.132 4.132 20 C -0.125 4.125 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.380 0.620 36 H -0.248 1.248 37 H -0.252 1.252 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -3.706 1.481 4.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.159 4.159 4 C -0.135 4.135 5 C -0.013 4.013 6 C -0.176 4.176 7 C -0.123 4.123 8 N -0.146 5.146 9 C 0.032 3.968 10 N -0.185 5.185 11 C -0.055 4.055 12 C -0.154 4.154 13 C -0.174 4.174 14 O -0.341 6.341 15 Si 0.589 3.411 16 C -0.108 4.108 17 C 0.053 3.947 18 F -0.093 7.093 19 C -0.170 4.170 20 C -0.163 4.163 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.138 0.862 35 H 0.228 0.772 36 H -0.173 1.173 37 H -0.177 1.177 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.320 -3.521 0.489 3.792 hybrid contribution -0.854 0.653 -0.297 1.115 sum 0.466 -2.868 0.193 2.912 Atomic orbital electron populations 1.21817 0.95178 1.01644 1.01775 1.21138 0.95529 0.96198 0.98258 1.21676 0.95324 0.96266 1.02607 1.21449 0.95716 1.00425 0.95933 1.22568 0.95602 0.93335 0.89826 1.23250 0.94859 1.03523 0.95960 1.23883 0.89251 1.01427 0.97780 1.67242 1.00884 1.43368 1.03077 1.20386 0.92613 0.88387 0.95463 1.67890 1.31637 1.09497 1.09471 1.22468 0.89133 0.99631 0.94285 1.21226 0.97615 0.95369 1.01195 1.25010 0.86189 1.09954 0.96278 1.86536 1.30488 1.74963 1.42077 0.94792 0.80044 0.79019 0.87288 1.21508 0.98889 0.95265 0.95120 1.18212 0.95269 0.82677 0.98532 1.91539 1.95545 1.38531 1.83644 1.22056 0.96027 0.94730 1.04201 1.21964 0.95215 1.00649 0.98448 0.93039 0.92625 0.92574 0.91212 0.91805 0.91464 0.90984 0.90810 0.88576 0.89788 0.88144 0.89442 0.81942 0.86240 0.77221 1.17286 1.17705 0.82897 0.88282 0.90684 0.91650 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 9.19 37.15 0.34 0.38 16 2 C -0.09 0.00 2.67 -90.65 -0.24 -0.24 16 3 C -0.12 -0.11 5.20 -26.68 -0.14 -0.25 16 4 C -0.10 -0.05 5.35 -26.75 -0.14 -0.19 16 5 C 0.07 0.03 0.79 -136.28 -0.11 -0.08 16 6 C -0.14 0.09 7.60 -26.33 -0.20 -0.11 16 7 C 0.00 0.00 7.32 -7.96 -0.06 -0.06 16 8 N -0.42 -0.80 6.05 -168.85 -1.02 -1.82 16 9 C 0.26 0.48 3.67 -154.86 -0.57 -0.09 16 10 N -0.47 -0.31 5.08 -12.37 -0.06 -0.38 16 11 C 0.10 -0.09 9.18 -17.57 -0.16 -0.25 16 12 C -0.15 0.15 5.22 -104.47 -0.55 -0.40 16 13 C -0.06 0.11 2.84 36.01 0.10 0.22 16 14 O -0.54 0.71 12.78 -35.23 -0.45 0.26 16 15 Si 0.69 -1.78 29.82 -169.99 -5.07 -6.85 16 16 C -0.08 -0.03 9.47 -39.26 -0.37 -0.41 16 17 C 0.08 0.16 5.53 -39.10 -0.22 -0.05 16 18 F -0.11 -0.43 15.52 2.25 0.03 -0.39 16 19 C -0.13 0.03 4.45 -26.75 -0.12 -0.09 16 20 C -0.13 0.02 4.39 -26.69 -0.12 -0.10 16 21 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 22 H 0.05 -0.05 8.14 -51.92 -0.42 -0.47 16 23 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 24 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 25 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.07 0.17 5.41 -51.93 -0.28 -0.11 16 27 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 28 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 -0.08 8.11 -51.93 -0.42 -0.50 16 30 H 0.08 -0.14 8.10 -51.93 -0.42 -0.56 16 31 H 0.10 0.05 6.00 -51.93 -0.31 -0.26 16 32 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.16 -0.51 4.88 -52.48 -0.26 -0.77 16 34 H 0.12 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.38 -1.90 8.70 45.56 0.40 -1.50 16 36 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 37 H -0.25 0.09 7.11 56.52 0.40 0.49 16 38 H 0.15 -0.05 8.06 -52.49 -0.42 -0.48 16 39 H 0.10 0.01 5.17 -51.93 -0.27 -0.26 16 40 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 41 H 0.06 -0.05 8.14 -51.92 -0.42 -0.47 16 42 H 0.06 0.03 2.75 -51.93 -0.14 -0.11 16 LS Contribution 312.88 15.07 4.72 4.72 Total: 0.00 -4.50 312.88 -10.36 -14.86 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -5.97 Total: -8.68 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.54 Total: -1.73 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -1.08 Total: -2.19 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: -0.45 Total: 0.26 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.03 Total: -0.39 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: -5.07 Total: -6.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -4.50 -10.36 -14.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17514092_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.345 kcal (2) G-P(sol) polarization free energy of solvation -4.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds