Wall clock time and date at job start Tue Mar 9 2021 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52970 * 109.43685 * 2 1 4 4 C 1.53125 * 109.44196 * 178.30729 * 3 2 1 5 5 C 1.52838 * 109.21904 * 58.00519 * 4 3 2 6 6 C 1.53222 * 113.46844 * 172.70626 * 5 4 3 7 7 C 1.53561 * 83.49598 * 219.31998 * 6 5 4 8 8 N 1.47181 * 113.40752 * 73.98120 * 5 4 3 9 9 C 1.39140 * 111.00234 * 253.37324 * 8 5 4 10 10 N 1.32344 * 119.71635 * 291.82009 * 9 8 5 11 11 C 1.32007 * 121.64588 * 180.26553 * 10 9 8 12 12 C 1.37982 * 120.89989 * 359.72662 * 11 10 9 13 13 C 1.50707 * 120.32702 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.46993 * 119.97839 * 13 12 11 15 15 Si 1.86297 * 109.46782 * 359.97438 * 13 12 11 16 16 C 1.38902 * 119.34868 * 0.02562 * 12 11 10 17 17 C 1.38445 * 118.48515 * 359.97438 * 16 12 11 18 18 F 1.35095 * 120.47262 * 179.97438 * 17 16 12 19 19 C 1.52835 * 112.69763 * 303.40691 * 5 4 3 20 20 C 1.52968 * 109.43992 * 239.77556 * 2 1 3 21 21 H 1.08999 * 109.47097 * 60.00362 * 1 2 3 22 22 H 1.09007 * 109.46871 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47346 * 300.00097 * 1 2 3 24 24 H 1.09004 * 109.39773 * 119.88467 * 2 1 3 25 25 H 1.09001 * 109.47923 * 58.30963 * 3 2 1 26 26 H 1.09004 * 109.47573 * 298.29522 * 3 2 1 27 27 H 1.08993 * 109.51206 * 298.07797 * 4 3 2 28 28 H 1.09007 * 109.55130 * 177.95103 * 4 3 2 29 29 H 1.08992 * 114.18110 * 332.94470 * 6 5 4 30 30 H 1.08997 * 114.18060 * 105.50039 * 6 5 4 31 31 H 1.09005 * 113.46901 * 271.00552 * 7 6 5 32 32 H 1.08998 * 113.46878 * 140.56277 * 7 6 5 33 33 H 1.08003 * 119.55168 * 179.70751 * 11 10 9 34 34 H 1.09000 * 109.47003 * 239.98192 * 13 12 11 35 35 H 0.96696 * 114.00119 * 299.99629 * 14 13 12 36 36 H 1.48505 * 109.99776 * 180.02562 * 15 13 12 37 37 H 1.48506 * 110.00160 * 301.31732 * 15 13 12 38 38 H 1.08001 * 120.75815 * 180.02562 * 16 12 11 39 39 H 1.08991 * 109.51355 * 176.50442 * 19 5 4 40 40 H 1.09003 * 109.51167 * 296.65889 * 19 5 4 41 41 H 1.09009 * 109.47269 * 301.67759 * 20 2 1 42 42 H 1.09001 * 109.47099 * 61.68383 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0390 1.4425 0.0000 4 6 3.5696 1.4429 0.0427 5 6 4.1066 0.6663 -1.1593 6 6 5.6287 0.7539 -1.3118 7 6 5.2982 0.8474 -2.8085 8 7 3.9823 1.3973 -2.4306 9 6 2.9711 0.8577 -3.2194 10 7 3.1185 -0.3505 -3.7390 11 6 2.1860 -0.8971 -4.4969 12 6 1.0127 -0.2251 -4.7720 13 6 -0.0435 -0.8615 -5.6383 14 8 -1.2569 -0.9886 -4.8943 15 14 0.5319 -2.5483 -6.1809 16 6 0.8146 1.0437 -4.2425 17 6 1.8097 1.5918 -3.4513 18 9 1.6593 2.8231 -2.9163 19 6 3.5697 -0.7631 -1.2256 20 6 2.0391 -0.7261 -1.2464 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8920 -0.5123 0.8915 25 1 1.6509 1.9649 0.8744 26 1 1.7005 1.9473 -0.9049 27 1 3.9083 0.9683 0.9636 28 1 3.9354 2.4691 0.0060 29 1 6.0678 1.6598 -0.8941 30 1 6.1592 -0.1538 -1.0243 31 1 5.2377 -0.1231 -3.3011 32 1 5.9261 1.5562 -3.3483 33 1 2.3437 -1.8835 -4.9074 34 1 -0.2185 -0.2380 -6.5151 35 1 -1.1753 -1.5318 -4.0985 36 1 -0.5007 -3.1863 -7.0365 37 1 1.8098 -2.4329 -6.9285 38 1 -0.0954 1.5899 -4.4429 39 1 3.9345 -1.2474 -2.1312 40 1 3.9085 -1.3202 -0.3521 41 1 1.6511 -1.7448 -1.2574 42 1 1.7003 -0.1985 -2.1380 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17514092_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:31:14 Heat of formation + Delta-G solvation = 29.784948 kcal Electronic energy + Delta-G solvation = -26220.980598 eV Core-core repulsion = 22698.344426 eV Total energy + Delta-G solvation = -3522.636172 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.06415 -43.38947 -40.70789 -37.99039 -37.76814 -33.98857 -32.97673 -31.81697 -31.68516 -29.74654 -26.63903 -26.21096 -25.16220 -23.88306 -23.11611 -23.01258 -21.19501 -20.13050 -19.12600 -18.41883 -18.21241 -17.58237 -17.01664 -16.59469 -16.19421 -16.14382 -15.93319 -15.50151 -15.44861 -15.26458 -14.87350 -14.53421 -14.28983 -14.06695 -13.76190 -13.59585 -13.44090 -13.20173 -12.92969 -12.73560 -12.57614 -12.46442 -12.22252 -12.15747 -12.13295 -11.84605 -11.42071 -11.33672 -10.97726 -10.86330 -10.67684 -10.46884 -10.26829 -9.59190 -5.02663 -0.39704 -0.14151 1.22537 1.61296 1.95586 2.24972 2.44999 2.97418 3.13517 3.34716 3.41872 3.52081 3.61517 3.70836 3.72792 3.80620 3.97517 4.03333 4.13231 4.21146 4.31174 4.37537 4.39731 4.45650 4.53475 4.59924 4.62025 4.68270 4.73296 4.76706 4.80230 4.87693 4.92199 4.97038 5.02500 5.08625 5.13092 5.17710 5.19688 5.28542 5.34242 5.40266 5.47470 5.52802 6.08353 6.51624 6.69676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.121 4.121 4 C -0.096 4.096 5 C 0.073 3.927 6 C -0.130 4.130 7 C 0.003 3.997 8 N -0.445 5.445 9 C 0.257 3.743 10 N -0.477 5.477 11 C 0.105 3.895 12 C -0.143 4.143 13 C -0.067 4.067 14 O -0.550 6.550 15 Si 0.777 3.223 16 C -0.082 4.082 17 C 0.053 3.947 18 F -0.131 7.131 19 C -0.128 4.128 20 C -0.125 4.125 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.188 0.812 34 H 0.116 0.884 35 H 0.396 0.604 36 H -0.294 1.294 37 H -0.277 1.277 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -5.148 1.706 5.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.159 4.159 4 C -0.134 4.134 5 C -0.015 4.015 6 C -0.167 4.167 7 C -0.125 4.125 8 N -0.167 5.167 9 C 0.027 3.973 10 N -0.188 5.188 11 C -0.053 4.053 12 C -0.146 4.146 13 C -0.177 4.177 14 O -0.358 6.358 15 Si 0.682 3.318 16 C -0.109 4.109 17 C 0.030 3.970 18 F -0.110 7.110 19 C -0.166 4.166 20 C -0.163 4.163 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.204 0.796 34 H 0.134 0.866 35 H 0.246 0.754 36 H -0.222 1.222 37 H -0.204 1.204 38 H 0.174 0.826 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.555 -4.948 0.749 5.240 hybrid contribution -0.984 1.106 -0.419 1.539 sum 0.571 -3.841 0.330 3.898 Atomic orbital electron populations 1.21793 0.95049 1.02107 1.01209 1.21111 0.95620 0.95460 0.98622 1.21656 0.95759 0.96895 1.01558 1.21441 0.95342 0.99987 0.96665 1.22634 0.96230 0.93528 0.89073 1.23233 0.94338 1.04183 0.94988 1.23902 0.88774 1.01253 0.98523 1.67234 1.01403 1.44211 1.03879 1.20400 0.92483 0.88730 0.95666 1.67936 1.32010 1.09048 1.09812 1.22880 0.88633 1.00352 0.93398 1.21300 0.97819 0.94708 1.00740 1.25165 0.85913 1.10672 0.95976 1.86507 1.30626 1.75596 1.43063 0.93772 0.76480 0.76225 0.85307 1.21617 0.98628 0.95823 0.94794 1.18451 0.96289 0.82523 0.99768 1.91488 1.95715 1.39617 1.84141 1.22029 0.95884 0.94230 1.04465 1.21966 0.95365 1.00990 0.97958 0.93931 0.91589 0.92818 0.90778 0.92082 0.93216 0.89903 0.91978 0.88630 0.88326 0.88042 0.89822 0.79604 0.86644 0.75351 1.22203 1.20370 0.82638 0.88386 0.89858 0.90635 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 9.19 71.98 0.66 0.73 16 2 C -0.09 0.00 2.67 -10.82 -0.03 -0.03 16 3 C -0.12 -0.34 5.20 30.63 0.16 -0.18 16 4 C -0.10 -0.15 5.35 30.58 0.16 0.02 16 5 C 0.07 0.06 0.79 0.34 0.00 0.06 16 6 C -0.13 0.19 7.60 30.86 0.23 0.42 16 7 C 0.00 0.00 7.32 83.27 0.61 0.61 16 8 N -0.45 -2.05 6.05 -688.13 -4.16 -6.21 16 9 C 0.26 1.10 3.67 133.08 0.49 1.59 16 10 N -0.48 -0.50 5.08 -193.04 -0.98 -1.49 16 11 C 0.11 -0.28 9.18 84.61 0.78 0.50 16 12 C -0.14 0.32 5.22 -19.76 -0.10 0.22 16 13 C -0.07 0.28 2.84 71.24 0.20 0.48 16 14 O -0.55 1.81 12.78 -148.98 -1.90 -0.09 16 15 Si 0.78 -4.68 29.82 68.60 2.05 -2.63 16 16 C -0.08 -0.13 9.47 22.48 0.21 0.09 16 17 C 0.05 0.29 5.53 22.58 0.12 0.42 16 18 F -0.13 -1.27 15.52 44.97 0.70 -0.57 16 19 C -0.13 0.14 4.45 30.58 0.14 0.28 16 20 C -0.13 0.10 4.39 30.62 0.13 0.24 16 21 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 22 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 23 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 25 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.05 0.34 5.41 -2.39 -0.01 0.33 16 27 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 29 H 0.10 -0.14 8.11 -2.39 -0.02 -0.16 16 30 H 0.10 -0.44 8.10 -2.39 -0.02 -0.46 16 31 H 0.10 0.09 6.00 -2.38 -0.01 0.07 16 32 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.19 -1.50 4.88 -2.91 -0.01 -1.51 16 34 H 0.12 -0.37 7.96 -2.39 -0.02 -0.39 16 35 H 0.40 -4.39 8.70 -74.06 -0.64 -5.03 16 36 H -0.29 -0.55 7.11 99.48 0.71 0.15 16 37 H -0.28 0.48 7.11 99.48 0.71 1.19 16 38 H 0.16 0.05 8.06 -2.91 -0.02 0.03 16 39 H 0.10 -0.07 5.17 -2.39 -0.01 -0.08 16 40 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.08 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.06 0.05 2.75 -2.39 -0.01 0.05 16 Total: 0.00 -11.63 312.88 -0.10 -11.72 By element: Atomic # 1 Polarization: -6.61 SS G_CDS: 0.43 Total: -6.18 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 3.77 Total: 5.45 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -5.14 Total: -7.69 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: -1.90 Total: -0.09 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.70 Total: -0.57 kcal Atomic # 14 Polarization: -4.68 SS G_CDS: 2.05 Total: -2.63 kcal Total: -11.63 -0.10 -11.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17514092_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.506 kcal (2) G-P(sol) polarization free energy of solvation -11.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds