Wall clock time and date at job start Tue Mar 9 2021 13:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.53005 * 109.46895 * 240.00438 * 2 1 3 5 5 C 1.52990 * 109.47117 * 120.00295 * 2 1 3 6 6 C 1.52970 * 109.43859 * 60.00119 * 5 2 1 7 7 C 1.53125 * 109.44196 * 178.35180 * 6 5 2 8 8 C 1.52838 * 109.21904 * 58.00519 * 7 6 5 9 9 C 1.53222 * 113.46844 * 172.70626 * 8 7 6 10 10 C 1.53561 * 83.49598 * 219.31998 * 9 8 7 11 11 N 1.47181 * 113.40752 * 73.98120 * 8 7 6 12 12 C 1.39140 * 111.00234 * 253.37324 * 11 8 7 13 13 N 1.32345 * 119.71450 * 292.47993 * 12 11 8 14 14 C 1.32016 * 121.64430 * 180.26283 * 13 12 11 15 15 C 1.37980 * 120.89698 * 359.73346 * 14 13 12 16 16 C 1.50703 * 120.32415 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47245 * 119.97476 * 16 15 14 18 18 Si 1.86304 * 109.47073 * 359.97438 * 16 15 14 19 19 C 1.38906 * 119.35349 * 359.97438 * 15 14 13 20 20 C 1.38446 * 118.48103 * 0.02562 * 19 15 14 21 21 F 1.35106 * 120.46951 * 179.97438 * 20 19 15 22 22 C 1.52835 * 112.69763 * 303.40691 * 8 7 6 23 23 C 1.52968 * 109.40278 * 299.79848 * 5 2 1 24 24 H 1.09002 * 109.47123 * 300.00340 * 1 2 3 25 25 H 1.09004 * 109.47327 * 59.99466 * 1 2 3 26 26 H 1.08995 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46961 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47009 * 300.00620 * 3 2 1 29 29 H 1.08998 * 109.46868 * 60.00322 * 3 2 1 30 30 H 1.08995 * 109.46792 * 299.99741 * 4 2 1 31 31 H 1.09000 * 109.47143 * 59.99448 * 4 2 1 32 32 H 1.08993 * 109.46769 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.43326 * 179.90857 * 5 2 1 34 34 H 1.09001 * 109.47923 * 58.35414 * 6 5 2 35 35 H 1.09004 * 109.47729 * 298.34505 * 6 5 2 36 36 H 1.08993 * 109.51206 * 298.07797 * 7 6 5 37 37 H 1.09007 * 109.55130 * 177.95103 * 7 6 5 38 38 H 1.08992 * 114.18110 * 332.94470 * 9 8 7 39 39 H 1.08997 * 114.18060 * 105.50039 * 9 8 7 40 40 H 1.09005 * 113.46901 * 271.00552 * 10 9 8 41 41 H 1.08998 * 113.46878 * 140.56277 * 10 9 8 42 42 H 1.07996 * 119.55149 * 179.70797 * 14 13 12 43 43 H 1.09001 * 109.47108 * 239.97466 * 16 15 14 44 44 H 0.96705 * 113.99612 * 179.97438 * 17 16 15 45 45 H 1.48492 * 110.00141 * 59.99964 * 18 16 15 46 46 H 1.48504 * 110.00075 * 181.32235 * 18 16 15 47 47 H 1.08002 * 120.75963 * 180.02562 * 19 15 14 48 48 H 1.08991 * 109.51355 * 176.50442 * 22 8 7 49 49 H 1.09003 * 109.51167 * 296.65889 * 22 8 7 50 50 H 1.09009 * 109.47269 * 301.65678 * 23 5 2 51 51 H 1.09001 * 109.47099 * 61.66302 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5297 -2.1633 1.2483 7 6 2.0737 -2.8972 2.4772 8 6 1.6364 -2.1560 3.7403 9 6 1.9770 -2.9022 5.0344 10 6 0.6004 -2.3921 5.4849 11 7 0.2121 -2.3396 4.0624 12 6 -0.5144 -1.1855 3.7862 13 7 -0.3111 -0.0941 4.5066 14 6 -0.9826 1.0199 4.2808 15 6 -1.9239 1.0882 3.2743 16 6 -2.6825 2.3667 3.0274 17 8 -2.4303 2.8209 1.6962 18 14 -2.1248 3.6642 4.2424 19 6 -2.1646 -0.0327 2.4899 20 6 -1.4455 -1.1870 2.7496 21 9 -1.6478 -2.3006 2.0119 22 6 2.0771 -0.6926 3.7476 23 6 1.5334 0.0039 2.4971 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2491 33 1 3.1300 -0.7223 1.2477 34 1 1.8687 -2.6683 0.3437 35 1 0.4400 -2.1633 1.2778 36 1 3.1622 -2.9272 2.4310 37 1 1.6819 -3.9142 2.4978 38 1 2.0375 -3.9847 4.9229 39 1 2.8161 -2.4786 5.5864 40 1 0.6351 -1.4125 5.9617 41 1 0.0345 -3.1229 6.0626 42 1 -0.7929 1.8894 4.8926 43 1 -3.7500 2.1858 3.1535 44 1 -2.8881 3.6414 1.4672 45 1 -0.6710 3.9199 4.0808 46 1 -2.8881 4.9203 4.0303 47 1 -2.8959 -0.0044 1.6957 48 1 1.6869 -0.1993 4.6378 49 1 3.1659 -0.6402 3.7492 50 1 1.8752 1.0389 2.4799 51 1 0.4437 -0.0187 2.5132 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_17761000_17656566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:09 Heat of formation + Delta-G solvation = 22.002191 kcal Electronic energy + Delta-G solvation = -33576.699448 eV Core-core repulsion = 29587.112933 eV Total energy + Delta-G solvation = -3989.586515 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.85376 -43.40336 -40.65487 -39.60169 -38.00701 -35.03373 -34.04791 -32.82458 -31.85846 -30.00050 -28.81148 -28.13336 -28.11849 -26.19449 -25.17122 -24.15876 -23.42641 -22.86336 -21.93022 -20.05831 -19.27906 -18.92531 -18.65943 -18.13874 -18.01286 -16.93082 -16.62267 -16.36481 -16.11027 -15.86733 -15.67388 -15.34729 -15.28681 -14.90645 -14.81203 -14.65099 -14.40096 -14.14019 -14.01144 -13.80473 -13.60190 -13.35715 -13.20120 -12.98044 -12.79997 -12.74227 -12.66465 -12.58081 -12.42835 -12.19227 -12.13802 -12.01930 -11.81673 -11.65979 -11.41632 -11.22990 -11.06038 -10.83716 -10.66120 -10.56986 -10.49130 -10.17723 -9.51671 -5.12765 -0.32801 -0.05634 1.06787 1.44181 1.80098 2.25979 2.52291 2.99064 3.08332 3.21422 3.44119 3.52574 3.62962 3.71850 3.78276 3.83949 3.89886 3.99773 4.04184 4.11526 4.18525 4.32036 4.35016 4.41501 4.45172 4.51174 4.58073 4.61269 4.63472 4.68187 4.73962 4.80330 4.82578 4.84606 4.85410 4.91966 4.95658 4.98918 5.03255 5.10724 5.13561 5.14454 5.17546 5.23241 5.25918 5.28455 5.30363 5.40711 5.44676 5.47542 5.55491 5.65061 5.70623 6.14976 6.24553 6.58734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.124 4.124 7 C -0.097 4.097 8 C 0.076 3.924 9 C -0.139 4.139 10 C 0.005 3.995 11 N -0.423 5.423 12 C 0.261 3.739 13 N -0.472 5.472 14 C 0.105 3.895 15 C -0.104 4.104 16 C -0.070 4.070 17 O -0.533 6.533 18 Si 0.678 3.322 19 C -0.079 4.079 20 C 0.078 3.922 21 F -0.115 7.115 22 C -0.132 4.132 23 C -0.129 4.129 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.164 0.836 43 H 0.083 0.917 44 H 0.383 0.617 45 H -0.249 1.249 46 H -0.255 1.255 47 H 0.151 0.849 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 2.174 2.646 3.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.199 4.199 4 C -0.200 4.200 5 C -0.093 4.093 6 C -0.161 4.161 7 C -0.135 4.135 8 C -0.012 4.012 9 C -0.177 4.177 10 C -0.123 4.123 11 N -0.145 5.145 12 C 0.031 3.969 13 N -0.184 5.184 14 C -0.053 4.053 15 C -0.107 4.107 16 C -0.181 4.181 17 O -0.340 6.340 18 Si 0.578 3.422 19 C -0.106 4.106 20 C 0.055 3.945 21 F -0.093 7.093 22 C -0.170 4.170 23 C -0.167 4.167 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.181 0.819 43 H 0.101 0.899 44 H 0.232 0.768 45 H -0.173 1.173 46 H -0.180 1.180 47 H 0.169 0.831 48 H 0.117 0.883 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.171 1.819 3.057 3.562 hybrid contribution -0.778 1.002 -1.750 2.161 sum -0.949 2.821 1.307 3.251 Atomic orbital electron populations 1.22054 0.94779 1.01611 1.01883 1.20513 0.95638 0.95214 0.94898 1.21911 1.00725 0.95607 1.01665 1.21928 1.00837 1.00426 0.96855 1.21156 0.99883 0.94625 0.93628 1.21782 1.01802 0.94836 0.97707 1.21453 1.00436 0.99016 0.92608 1.22553 0.86126 0.96087 0.96476 1.23251 0.97399 1.01290 0.95711 1.23882 0.95787 1.03011 0.89596 1.67244 1.09398 1.26000 1.11825 1.20370 0.94153 0.90560 0.91859 1.67923 1.23325 0.98866 1.28244 1.22388 0.91344 0.95938 0.95630 1.20074 0.98744 0.94682 0.97152 1.24661 1.01908 0.99687 0.91813 1.86587 1.74110 1.45394 1.27931 0.95125 0.81384 0.78550 0.87103 1.21463 0.99102 0.90502 0.99514 1.18154 0.98604 0.84318 0.93402 1.91539 1.93516 1.49672 1.74560 1.22072 1.01422 0.93313 1.00238 1.22078 1.01575 0.99183 0.93824 0.92351 0.92946 0.92640 0.92820 0.92813 0.92652 0.92328 0.92808 0.92765 0.91406 0.91570 0.91030 0.91133 0.90855 0.88612 0.89879 0.88138 0.89394 0.81945 0.89873 0.76812 1.17303 1.17968 0.83091 0.88311 0.90895 0.91763 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 7.43 37.16 0.28 -0.02 16 2 C -0.06 -0.09 0.57 -154.51 -0.09 -0.18 16 3 C -0.14 -0.21 8.12 37.16 0.30 0.09 16 4 C -0.14 -0.16 8.12 37.16 0.30 0.14 16 5 C -0.07 -0.10 1.50 -90.66 -0.14 -0.24 16 6 C -0.12 -0.20 4.50 -26.68 -0.12 -0.32 16 7 C -0.10 -0.11 5.35 -26.75 -0.14 -0.25 16 8 C 0.08 0.07 0.79 -136.28 -0.11 -0.04 16 9 C -0.14 0.04 7.60 -26.33 -0.20 -0.16 16 10 C 0.00 0.00 7.33 -7.96 -0.06 -0.06 16 11 N -0.42 -0.90 6.05 -168.85 -1.02 -1.92 16 12 C 0.26 0.57 3.67 -154.86 -0.57 0.01 16 13 N -0.47 -0.59 5.03 -12.37 -0.06 -0.65 16 14 C 0.10 0.00 9.15 -17.57 -0.16 -0.16 16 15 C -0.10 0.00 5.26 -104.47 -0.55 -0.55 16 16 C -0.07 0.13 2.83 36.01 0.10 0.23 16 17 O -0.53 0.36 12.75 -35.23 -0.45 -0.08 16 18 Si 0.68 -1.63 29.82 -169.99 -5.07 -6.70 16 19 C -0.08 -0.08 7.78 -39.26 -0.31 -0.39 16 20 C 0.08 0.19 5.05 -39.10 -0.20 0.00 16 21 F -0.11 -0.44 15.60 2.25 0.04 -0.41 16 22 C -0.13 -0.13 4.45 -26.75 -0.12 -0.25 16 23 C -0.13 -0.21 3.67 -26.69 -0.10 -0.31 16 24 H 0.06 0.16 4.43 -51.93 -0.23 -0.07 16 25 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.05 0.15 6.46 -51.93 -0.34 -0.19 16 27 H 0.05 0.07 8.14 -51.93 -0.42 -0.36 16 28 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.05 0.11 6.38 -51.93 -0.33 -0.22 16 30 H 0.06 0.07 6.39 -51.93 -0.33 -0.26 16 31 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.07 0.10 6.34 -51.93 -0.33 -0.23 16 35 H 0.07 0.21 3.87 -51.93 -0.20 0.01 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 38 H 0.10 -0.05 8.11 -51.93 -0.42 -0.47 16 39 H 0.08 -0.10 8.10 -51.93 -0.42 -0.52 16 40 H 0.10 0.06 6.01 -51.93 -0.31 -0.26 16 41 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.16 -0.36 4.88 -52.49 -0.26 -0.61 16 43 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 44 H 0.38 -1.67 8.74 45.56 0.40 -1.27 16 45 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 46 H -0.25 0.07 7.11 56.52 0.40 0.48 16 47 H 0.15 0.02 8.06 -52.49 -0.42 -0.41 16 48 H 0.10 0.13 5.16 -51.93 -0.27 -0.14 16 49 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 50 H 0.06 0.14 6.33 -51.92 -0.33 -0.18 16 51 H 0.07 0.14 1.21 -51.93 -0.06 0.07 16 LS Contribution 356.46 15.07 5.37 5.37 Total: 0.00 -4.34 356.46 -10.76 -15.09 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: -7.69 Total: -8.25 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.87 Total: -2.45 kcal Atomic # 7 Polarization: -1.49 SS G_CDS: -1.08 Total: -2.58 kcal Atomic # 8 Polarization: 0.36 SS G_CDS: -0.45 Total: -0.08 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: -5.07 Total: -6.70 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -4.34 -10.76 -15.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17761000_17656566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.097 kcal (2) G-P(sol) polarization free energy of solvation -4.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds