Wall clock time and date at job start Tue Mar 9 2021 13:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47141 * 2 1 4 4 C 1.53005 * 109.46895 * 240.00438 * 2 1 3 5 5 C 1.52990 * 109.47117 * 120.00295 * 2 1 3 6 6 C 1.52970 * 109.43859 * 60.00119 * 5 2 1 7 7 C 1.53125 * 109.44196 * 178.35180 * 6 5 2 8 8 C 1.52838 * 109.21904 * 58.00519 * 7 6 5 9 9 C 1.53222 * 113.46844 * 172.70626 * 8 7 6 10 10 C 1.53561 * 83.49598 * 219.31998 * 9 8 7 11 11 N 1.47181 * 113.40752 * 73.98120 * 8 7 6 12 12 C 1.39140 * 111.00234 * 253.37324 * 11 8 7 13 13 N 1.32345 * 119.71450 * 292.47993 * 12 11 8 14 14 C 1.32016 * 121.64430 * 180.26283 * 13 12 11 15 15 C 1.37980 * 120.89698 * 359.73346 * 14 13 12 16 16 C 1.50703 * 120.32415 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47245 * 119.97476 * 16 15 14 18 18 Si 1.86304 * 109.47073 * 359.97438 * 16 15 14 19 19 C 1.38906 * 119.35349 * 359.97438 * 15 14 13 20 20 C 1.38446 * 118.48103 * 0.02562 * 19 15 14 21 21 F 1.35106 * 120.46951 * 179.97438 * 20 19 15 22 22 C 1.52835 * 112.69763 * 303.40691 * 8 7 6 23 23 C 1.52968 * 109.40278 * 299.79848 * 5 2 1 24 24 H 1.09002 * 109.47123 * 300.00340 * 1 2 3 25 25 H 1.09004 * 109.47327 * 59.99466 * 1 2 3 26 26 H 1.08995 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46961 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47009 * 300.00620 * 3 2 1 29 29 H 1.08998 * 109.46868 * 60.00322 * 3 2 1 30 30 H 1.08995 * 109.46792 * 299.99741 * 4 2 1 31 31 H 1.09000 * 109.47143 * 59.99448 * 4 2 1 32 32 H 1.08993 * 109.46769 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.43326 * 179.90857 * 5 2 1 34 34 H 1.09001 * 109.47923 * 58.35414 * 6 5 2 35 35 H 1.09004 * 109.47729 * 298.34505 * 6 5 2 36 36 H 1.08993 * 109.51206 * 298.07797 * 7 6 5 37 37 H 1.09007 * 109.55130 * 177.95103 * 7 6 5 38 38 H 1.08992 * 114.18110 * 332.94470 * 9 8 7 39 39 H 1.08997 * 114.18060 * 105.50039 * 9 8 7 40 40 H 1.09005 * 113.46901 * 271.00552 * 10 9 8 41 41 H 1.08998 * 113.46878 * 140.56277 * 10 9 8 42 42 H 1.07996 * 119.55149 * 179.70797 * 14 13 12 43 43 H 1.09001 * 109.47108 * 239.97466 * 16 15 14 44 44 H 0.96705 * 113.99612 * 179.97438 * 17 16 15 45 45 H 1.48492 * 110.00141 * 59.99964 * 18 16 15 46 46 H 1.48504 * 110.00075 * 181.32235 * 18 16 15 47 47 H 1.08002 * 120.75963 * 180.02562 * 19 15 14 48 48 H 1.08991 * 109.51355 * 176.50442 * 22 8 7 49 49 H 1.09003 * 109.51167 * 296.65889 * 22 8 7 50 50 H 1.09009 * 109.47269 * 301.65678 * 23 5 2 51 51 H 1.09001 * 109.47099 * 61.66302 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0400 -0.7213 1.2491 6 6 1.5297 -2.1633 1.2483 7 6 2.0737 -2.8972 2.4772 8 6 1.6364 -2.1560 3.7403 9 6 1.9770 -2.9022 5.0344 10 6 0.6004 -2.3921 5.4849 11 7 0.2121 -2.3396 4.0624 12 6 -0.5144 -1.1855 3.7862 13 7 -0.3111 -0.0941 4.5066 14 6 -0.9826 1.0199 4.2808 15 6 -1.9239 1.0882 3.2743 16 6 -2.6825 2.3667 3.0274 17 8 -2.4303 2.8209 1.6962 18 14 -2.1248 3.6642 4.2424 19 6 -2.1646 -0.0327 2.4899 20 6 -1.4455 -1.1870 2.7496 21 9 -1.6478 -2.3006 2.0119 22 6 2.0771 -0.6926 3.7476 23 6 1.5334 0.0039 2.4971 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2491 33 1 3.1300 -0.7223 1.2477 34 1 1.8687 -2.6683 0.3437 35 1 0.4400 -2.1633 1.2778 36 1 3.1622 -2.9272 2.4310 37 1 1.6819 -3.9142 2.4978 38 1 2.0375 -3.9847 4.9229 39 1 2.8161 -2.4786 5.5864 40 1 0.6351 -1.4125 5.9617 41 1 0.0345 -3.1229 6.0626 42 1 -0.7929 1.8894 4.8926 43 1 -3.7500 2.1858 3.1535 44 1 -2.8881 3.6414 1.4672 45 1 -0.6710 3.9199 4.0808 46 1 -2.8881 4.9203 4.0303 47 1 -2.8959 -0.0044 1.6957 48 1 1.6869 -0.1993 4.6378 49 1 3.1659 -0.6402 3.7492 50 1 1.8752 1.0389 2.4799 51 1 0.4437 -0.0187 2.5132 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_17761000_17656566.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:35:08 Heat of formation + Delta-G solvation = 28.799047 kcal Electronic energy + Delta-G solvation = -33576.404714 eV Core-core repulsion = 29587.112933 eV Total energy + Delta-G solvation = -3989.291781 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -50.03652 -43.46381 -40.68345 -39.72132 -37.92125 -35.13924 -34.06780 -32.87905 -31.96137 -30.02789 -28.88485 -28.29211 -28.25008 -26.15889 -25.22386 -24.23246 -23.53034 -22.88526 -22.02306 -20.10020 -19.41474 -18.93521 -18.63008 -18.18393 -18.09659 -17.05827 -16.70533 -16.38304 -16.23113 -15.82374 -15.77519 -15.44256 -15.28884 -15.03978 -14.92018 -14.77180 -14.43210 -14.16434 -14.07649 -13.83546 -13.68136 -13.45773 -13.29730 -13.06693 -12.82590 -12.79181 -12.73856 -12.68511 -12.49722 -12.22090 -12.21475 -12.07378 -11.93545 -11.77638 -11.51614 -11.31438 -11.17383 -10.87080 -10.74376 -10.58472 -10.49041 -10.24279 -9.57929 -4.95563 -0.37406 -0.11603 1.21779 1.57828 1.92808 2.23235 2.47909 2.98632 3.10747 3.23221 3.40674 3.55891 3.57185 3.67764 3.71580 3.73208 3.82833 3.90394 3.96595 4.14300 4.21768 4.24779 4.29724 4.35672 4.36131 4.41838 4.48054 4.52127 4.58045 4.61872 4.65711 4.68569 4.73162 4.79003 4.81505 4.82150 4.87390 4.92348 4.95758 4.98109 4.98500 5.05677 5.09420 5.11485 5.14280 5.17076 5.21105 5.31708 5.35908 5.37192 5.44341 5.52553 5.56466 6.09391 6.51500 6.55898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.069 4.069 6 C -0.122 4.122 7 C -0.096 4.096 8 C 0.074 3.926 9 C -0.130 4.130 10 C 0.004 3.996 11 N -0.440 5.440 12 C 0.254 3.746 13 N -0.476 5.476 14 C 0.102 3.898 15 C -0.104 4.104 16 C -0.077 4.077 17 O -0.553 6.553 18 Si 0.756 3.244 19 C -0.081 4.081 20 C 0.060 3.940 21 F -0.129 7.129 22 C -0.128 4.128 23 C -0.129 4.129 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.183 0.817 43 H 0.106 0.894 44 H 0.398 0.602 45 H -0.290 1.290 46 H -0.281 1.281 47 H 0.156 0.844 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.056 0.944 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.963 2.659 3.181 4.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.087 4.087 6 C -0.159 4.159 7 C -0.134 4.134 8 C -0.014 4.014 9 C -0.167 4.167 10 C -0.123 4.123 11 N -0.162 5.162 12 C 0.025 3.975 13 N -0.187 5.187 14 C -0.056 4.056 15 C -0.106 4.106 16 C -0.186 4.186 17 O -0.363 6.363 18 Si 0.660 3.340 19 C -0.107 4.107 20 C 0.037 3.963 21 F -0.107 7.107 22 C -0.166 4.166 23 C -0.167 4.167 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.107 0.893 42 H 0.199 0.801 43 H 0.124 0.876 44 H 0.249 0.751 45 H -0.217 1.217 46 H -0.207 1.207 47 H 0.174 0.826 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.075 0.925 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.053 2.292 3.592 4.261 hybrid contribution -0.846 0.918 -1.947 2.313 sum -0.899 3.210 1.644 3.717 Atomic orbital electron populations 1.21969 0.95268 1.00914 1.01393 1.20511 0.95147 0.95341 0.95200 1.21875 1.00956 0.95440 1.01302 1.21906 1.01080 1.00245 0.96613 1.21095 0.99757 0.94375 0.93496 1.21739 1.00968 0.95124 0.98064 1.21451 1.00910 0.98565 0.92496 1.22581 0.85759 0.96142 0.96896 1.23235 0.97328 1.01350 0.94818 1.23905 0.96302 1.03093 0.89009 1.67247 1.09944 1.26332 1.12695 1.20398 0.94249 0.90899 0.91978 1.67946 1.23599 0.98975 1.28186 1.22770 0.90901 0.96155 0.95777 1.20283 0.98581 0.95086 0.96669 1.24853 1.03077 0.99017 0.91674 1.86547 1.74754 1.46565 1.28431 0.94262 0.77518 0.76414 0.85809 1.21582 0.99000 0.90406 0.99745 1.18346 0.99597 0.84405 0.93951 1.91494 1.93737 1.50476 1.75012 1.22030 1.01633 0.93262 0.99715 1.22064 1.01492 0.98803 0.94294 0.92955 0.93188 0.93432 0.92376 0.92849 0.93298 0.92503 0.92797 0.92319 0.91327 0.91593 0.92358 0.90195 0.91507 0.88349 0.88622 0.88138 0.89310 0.80063 0.87621 0.75060 1.21678 1.20704 0.82623 0.88544 0.90346 0.92505 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 7.43 71.98 0.53 -0.17 16 2 C -0.06 -0.21 0.57 -52.18 -0.03 -0.24 16 3 C -0.14 -0.46 8.12 71.98 0.58 0.13 16 4 C -0.14 -0.36 8.12 71.98 0.58 0.23 16 5 C -0.07 -0.22 1.50 -10.82 -0.02 -0.24 16 6 C -0.12 -0.50 4.50 30.63 0.14 -0.36 16 7 C -0.10 -0.25 5.35 30.58 0.16 -0.08 16 8 C 0.07 0.16 0.79 0.34 0.00 0.16 16 9 C -0.13 0.11 7.60 30.86 0.23 0.34 16 10 C 0.00 0.01 7.33 83.27 0.61 0.62 16 11 N -0.44 -2.18 6.05 -688.13 -4.16 -6.34 16 12 C 0.25 1.31 3.67 133.08 0.49 1.80 16 13 N -0.48 -1.34 5.03 -193.04 -0.97 -2.31 16 14 C 0.10 0.00 9.15 84.60 0.77 0.77 16 15 C -0.10 0.01 5.26 -19.76 -0.10 -0.10 16 16 C -0.08 0.33 2.83 71.24 0.20 0.53 16 17 O -0.55 0.93 12.75 -148.98 -1.90 -0.97 16 18 Si 0.76 -4.01 29.82 68.60 2.05 -1.97 16 19 C -0.08 -0.22 7.78 22.48 0.17 -0.04 16 20 C 0.06 0.36 5.05 22.58 0.11 0.48 16 21 F -0.13 -1.22 15.60 44.97 0.70 -0.52 16 22 C -0.13 -0.27 4.45 30.58 0.14 -0.13 16 23 C -0.13 -0.49 3.67 30.62 0.11 -0.37 16 24 H 0.05 0.34 4.43 -2.39 -0.01 0.33 16 25 H 0.05 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.05 0.32 6.46 -2.39 -0.02 0.31 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.05 0.23 6.38 -2.39 -0.02 0.21 16 30 H 0.06 0.17 6.39 -2.39 -0.02 0.15 16 31 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 34 H 0.07 0.25 6.34 -2.39 -0.02 0.23 16 35 H 0.06 0.43 3.87 -2.38 -0.01 0.42 16 36 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 38 H 0.10 -0.13 8.11 -2.39 -0.02 -0.15 16 39 H 0.10 -0.32 8.10 -2.39 -0.02 -0.34 16 40 H 0.10 0.12 6.01 -2.38 -0.01 0.11 16 41 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.18 -0.88 4.88 -2.91 -0.01 -0.89 16 43 H 0.11 -0.89 7.96 -2.39 -0.02 -0.91 16 44 H 0.40 -3.66 8.74 -74.05 -0.65 -4.31 16 45 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 46 H -0.28 0.27 7.11 99.48 0.71 0.98 16 47 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 48 H 0.10 0.26 5.16 -2.39 -0.01 0.25 16 49 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 50 H 0.06 0.29 6.33 -2.38 -0.02 0.27 16 51 H 0.07 0.32 1.21 -2.39 0.00 0.31 16 Total: 0.00 -10.94 356.46 0.77 -10.17 By element: Atomic # 1 Polarization: -1.73 SS G_CDS: 0.35 Total: -1.38 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.70 Total: 3.31 kcal Atomic # 7 Polarization: -3.52 SS G_CDS: -5.13 Total: -8.65 kcal Atomic # 8 Polarization: 0.93 SS G_CDS: -1.90 Total: -0.97 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.70 Total: -0.52 kcal Atomic # 14 Polarization: -4.01 SS G_CDS: 2.05 Total: -1.97 kcal Total: -10.94 0.77 -10.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_17761000_17656566.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -10.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds