Wall clock time and date at job start Tue Mar 9 2021 12:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 H 1.00897 * 1 3 3 H 1.00898 * 109.47390 * 1 2 4 4 H 1.00906 * 109.46714 * 239.99453 * 1 2 3 5 5 C 1.46898 * 109.47101 * 119.99997 * 1 2 3 6 6 H 1.08999 * 109.47031 * 179.97438 * 5 1 2 7 7 C 1.53003 * 109.47052 * 299.99638 * 5 1 2 8 8 C 1.52998 * 109.47132 * 179.97438 * 7 5 1 9 9 C 1.52998 * 109.47339 * 300.00338 * 8 7 5 10 10 H 1.09004 * 109.47126 * 299.99778 * 9 8 7 11 11 N 1.46504 * 109.47320 * 179.97438 * 9 8 7 12 12 C 1.38008 * 119.99557 * 84.99996 * 11 9 8 13 13 N 1.33105 * 120.03420 * 359.97390 * 12 11 9 14 14 C 1.32183 * 120.13636 * 180.02562 * 13 12 11 15 15 N 1.32101 * 120.20091 * 359.72864 * 14 13 12 16 16 C 1.33319 * 120.06226 * 0.55044 * 15 14 13 17 17 C 1.47899 * 120.06900 * 179.71884 * 16 15 14 18 18 C 1.34669 * 122.88828 * 179.74850 * 17 16 15 19 19 S 1.70633 * 110.49843 * 179.73564 * 18 17 16 20 20 C 1.75727 * 91.71667 * 0.26984 * 19 18 17 21 21 C 1.33062 * 109.80527 * 359.97438 * 20 19 18 22 22 C 1.50698 * 123.12322 * 180.02562 * 21 20 19 23 23 O 1.42907 * 109.46986 * 254.97426 * 22 21 20 24 24 Si 1.86299 * 109.47372 * 14.97234 * 22 21 20 25 25 N 1.32838 * 120.03483 * 180.02562 * 12 11 9 26 26 C 1.53003 * 109.47285 * 59.99756 * 9 8 7 27 27 C 1.52998 * 109.47132 * 300.00371 * 26 9 8 28 28 H 1.09001 * 109.46975 * 299.99932 * 7 5 1 29 29 H 1.09004 * 109.47020 * 60.00340 * 7 5 1 30 30 H 1.08999 * 109.47622 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.46831 * 60.00298 * 8 7 5 32 32 H 0.96997 * 120.00241 * 264.99792 * 11 9 8 33 33 H 1.07994 * 119.89631 * 180.02562 * 14 13 12 34 34 H 1.08002 * 124.75305 * 0.02562 * 18 17 16 35 35 H 1.08007 * 125.09490 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.47332 * 134.97740 * 22 21 20 37 37 H 0.96697 * 114.00096 * 60.00204 * 23 22 21 38 38 H 1.48504 * 109.99585 * 58.68205 * 24 22 21 39 39 H 1.48500 * 110.00105 * 179.97438 * 24 22 21 40 40 H 1.09004 * 109.47020 * 59.99958 * 26 9 8 41 41 H 1.09001 * 109.46975 * 180.02562 * 26 9 8 42 42 H 1.08999 * 109.47104 * 180.02562 * 27 26 9 43 43 H 1.09004 * 109.46831 * 299.99702 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 1 1.0090 0.0000 0.0000 3 1 -0.3364 0.9513 0.0000 4 1 -0.3363 -0.4758 0.8239 5 6 -0.4897 -0.6925 -1.1994 6 1 -1.5796 -0.6929 -1.1992 7 6 0.0203 0.0288 -2.4487 8 6 -0.4892 -0.6927 -3.6979 9 6 0.0213 -2.1350 -3.6977 10 1 1.1114 -2.1347 -3.6975 11 7 -0.4670 -2.8262 -4.8936 12 6 0.2258 -2.7210 -6.0825 13 7 1.3374 -1.9914 -6.1435 14 6 2.0023 -1.8888 -7.2813 15 7 1.5704 -2.5138 -8.3620 16 6 0.4549 -3.2422 -8.3113 17 6 -0.0321 -3.9369 -9.5227 18 6 -1.1480 -4.6908 -9.5345 19 16 -1.4175 -5.3348 -11.0915 20 6 0.0287 -4.5595 -11.7203 21 6 0.6281 -3.8708 -10.7523 22 6 1.8980 -3.0875 -10.9641 23 8 2.9957 -3.7934 -10.3818 24 14 2.1973 -2.8714 -12.7901 25 7 -0.2165 -3.3469 -7.1674 26 6 -0.4886 -2.8564 -2.4484 27 6 0.0208 -2.1348 -1.1992 28 1 -0.3431 1.0565 -2.4486 29 1 1.1103 0.0288 -2.4487 30 1 -0.1263 -0.1787 -4.5879 31 1 -1.5792 -0.6931 -3.6981 32 1 -1.2772 -3.3577 -4.8497 33 1 2.9040 -1.2962 -7.3263 34 1 -1.7858 -4.8599 -8.6795 35 1 0.3784 -4.6312 -12.7396 36 1 1.8043 -2.1092 -10.4930 37 1 3.1386 -4.6744 -10.7538 38 1 1.0481 -2.1668 -13.4132 39 1 3.4465 -2.0999 -13.0123 40 1 -1.5786 -2.8568 -2.4486 41 1 -0.1245 -3.8838 -2.4480 42 1 -0.3421 -2.6489 -0.3092 43 1 1.1109 -2.1344 -1.1990 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_273584_18081482_17087578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:22 Heat of formation + Delta-G solvation = 195.390588 kcal Electronic energy + Delta-G solvation = -26570.918827 eV Core-core repulsion = 22863.920564 eV Total energy + Delta-G solvation = -3706.998263 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.63686 -43.25862 -40.71135 -39.98807 -37.56292 -37.18769 -35.58727 -34.24473 -33.97958 -32.00753 -30.90307 -28.67346 -26.82735 -26.44483 -25.98378 -25.15961 -23.99685 -23.35865 -21.59089 -21.25521 -21.13476 -20.52361 -19.93802 -19.86223 -19.19939 -18.17590 -17.92472 -17.68342 -17.42431 -17.22765 -16.95635 -16.62657 -16.26614 -16.13092 -15.89553 -15.72743 -15.45805 -15.38392 -14.86455 -14.83379 -14.74786 -14.53092 -14.47701 -14.22982 -14.20145 -13.91914 -13.28660 -13.19419 -13.07950 -12.82027 -12.56159 -12.25065 -11.42215 -11.33067 -10.77077 -10.70761 -10.54936 -10.08116 -5.52043 -1.34636 -1.23001 -0.67211 -0.48058 -0.13441 0.21223 0.45961 0.65351 0.70716 0.80769 0.83080 0.86560 1.17663 1.45159 1.52319 1.55816 1.63633 1.85443 1.96785 2.01738 2.14872 2.17876 2.25834 2.27531 2.38954 2.42400 2.64408 2.77137 2.82939 2.89885 3.09555 3.13307 3.27467 3.30714 3.35625 3.48318 3.49735 3.63245 3.74517 3.96576 4.05360 4.21329 4.41041 4.45269 4.67918 4.78922 5.09015 5.38847 6.19856 6.54809 Molecular weight = 335.13amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002827 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.629131 B = 9900.729853 C =10792.674812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 H 0.434 0.566 3 H 0.437 0.563 4 H 0.437 0.563 5 C 0.024 3.976 6 H 0.143 0.857 7 C -0.138 4.138 8 C -0.130 4.130 9 C 0.157 3.843 10 H 0.101 0.899 11 N -0.688 5.688 12 C 0.600 3.400 13 N -0.615 5.615 14 C 0.384 3.616 15 N -0.560 5.560 16 C 0.472 3.528 17 C -0.067 4.067 18 C -0.191 4.191 19 S 0.227 5.773 20 C -0.236 4.236 21 C -0.092 4.092 22 C -0.026 4.026 23 O -0.523 6.523 24 Si 0.667 3.333 25 N -0.601 5.601 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.208 0.792 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.128 0.872 37 H 0.370 0.630 38 H -0.257 1.257 39 H -0.252 1.252 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 9.727 32.265 33.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.034 5.034 2 H 0.263 0.737 3 H 0.266 0.734 4 H 0.266 0.734 5 C -0.080 4.080 6 H 0.161 0.839 7 C -0.176 4.176 8 C -0.170 4.170 9 C 0.051 3.949 10 H 0.119 0.881 11 N -0.327 5.327 12 C 0.234 3.766 13 N -0.346 5.346 14 C 0.086 3.914 15 N -0.283 5.283 16 C 0.197 3.803 17 C -0.083 4.083 18 C -0.332 4.332 19 S 0.495 5.505 20 C -0.371 4.371 21 C -0.104 4.104 22 C -0.141 4.141 23 O -0.327 6.327 24 Si 0.569 3.431 25 N -0.330 5.330 26 C -0.167 4.167 27 C -0.174 4.174 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.256 0.744 33 H 0.224 0.776 34 H 0.195 0.805 35 H 0.196 0.804 36 H 0.145 0.855 37 H 0.216 0.784 38 H -0.182 1.182 39 H -0.177 1.177 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.687 9.867 31.243 33.098 hybrid contribution 0.547 1.144 1.609 2.048 sum -4.140 11.011 32.852 34.894 Atomic orbital electron populations 1.42644 1.21348 1.20733 1.18632 0.73728 0.73399 0.73449 1.23594 1.04468 0.95755 0.84206 0.83895 1.22038 1.03333 1.00137 0.92090 1.21955 1.01933 0.95796 0.97307 1.20992 1.00765 0.90273 0.82836 0.88146 1.43945 1.28928 1.54510 1.05274 1.19179 0.85790 0.85275 0.86333 1.68547 1.09983 1.25157 1.30875 1.25246 0.95616 0.88874 0.81693 1.69339 1.14568 1.12811 1.31562 1.20817 0.84484 0.85926 0.89049 1.16777 0.97083 1.03419 0.91059 1.25441 1.01327 1.02035 1.04361 1.83488 1.22522 1.46081 0.98449 1.25606 1.01495 1.06183 1.03856 1.19395 0.99283 1.00199 0.91547 1.24771 0.83050 0.97485 1.08755 1.86584 1.47977 1.32769 1.65358 0.95416 0.81166 0.90139 0.76423 1.68489 1.36697 1.28083 0.99708 1.21777 1.02528 1.00895 0.91519 1.22001 1.03352 0.90751 1.01341 0.88948 0.88875 0.89081 0.90532 0.74404 0.77555 0.80529 0.80412 0.85498 0.78416 1.18161 1.17679 0.89843 0.88743 0.88597 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.64 23.99 4.15 -4.67 -0.02 23.97 16 2 H 0.43 -16.78 8.90 -39.29 -0.35 -17.13 16 3 H 0.44 -17.11 8.96 -39.29 -0.35 -17.46 16 4 H 0.44 -17.19 8.96 -39.29 -0.35 -17.54 16 5 C 0.02 -0.75 3.03 -67.71 -0.20 -0.95 16 6 H 0.14 -4.55 8.14 -51.93 -0.42 -4.97 16 7 C -0.14 3.73 5.43 -26.73 -0.15 3.59 16 8 C -0.13 2.74 5.51 -26.73 -0.15 2.59 16 9 C 0.16 -3.04 2.46 -67.93 -0.17 -3.20 16 10 H 0.10 -1.79 7.54 -51.93 -0.39 -2.19 16 11 N -0.69 10.01 5.21 -55.67 -0.29 9.72 16 12 C 0.60 -5.85 8.45 -322.15 -2.72 -8.58 16 13 N -0.62 6.10 9.34 -15.38 -0.14 5.96 16 14 C 0.38 -3.32 12.40 -91.56 -1.13 -4.46 16 15 N -0.56 3.46 6.76 -12.57 -0.08 3.38 16 16 C 0.47 -2.75 7.61 -156.10 -1.19 -3.93 16 17 C -0.07 0.42 5.80 -106.65 -0.62 -0.20 16 18 C -0.19 1.46 10.45 29.47 0.31 1.77 16 19 S 0.23 -1.98 23.09 -107.50 -2.48 -4.47 16 20 C -0.24 1.98 9.67 28.93 0.28 2.26 16 21 C -0.09 0.63 5.20 -105.87 -0.55 0.08 16 22 C -0.03 0.18 1.82 36.00 0.07 0.24 16 23 O -0.52 3.42 12.14 -35.23 -0.43 2.99 16 24 Si 0.67 -4.81 30.36 -169.99 -5.16 -9.98 16 25 N -0.60 4.33 10.00 -11.95 -0.12 4.21 16 26 C -0.13 2.92 5.39 -26.73 -0.14 2.78 16 27 C -0.14 3.82 5.43 -26.73 -0.15 3.67 16 28 H 0.09 -2.55 8.14 -51.93 -0.42 -2.97 16 29 H 0.09 -2.52 8.14 -51.93 -0.42 -2.95 16 30 H 0.09 -1.55 8.14 -51.93 -0.42 -1.97 16 31 H 0.08 -1.58 8.14 -51.93 -0.42 -2.00 16 32 H 0.42 -6.35 8.72 -40.82 -0.36 -6.70 16 33 H 0.21 -2.43 8.06 -52.49 -0.42 -2.85 16 34 H 0.18 -1.55 7.93 -52.49 -0.42 -1.96 16 35 H 0.18 -1.88 5.91 -52.48 -0.31 -2.19 16 36 H 0.13 -0.69 6.41 -51.93 -0.33 -1.02 16 37 H 0.37 -3.68 8.70 45.56 0.40 -3.28 16 38 H -0.26 1.18 7.11 56.52 0.40 1.58 16 39 H -0.25 0.93 7.11 56.52 0.40 1.33 16 40 H 0.08 -1.90 8.14 -51.93 -0.42 -2.33 16 41 H 0.09 -1.93 8.14 -51.93 -0.42 -2.35 16 42 H 0.10 -2.77 8.14 -51.93 -0.42 -3.19 16 43 H 0.09 -2.62 8.14 -51.93 -0.42 -3.04 16 LS Contribution 357.28 15.07 5.38 5.38 Total: 1.00 -42.61 357.28 -15.75 -58.36 By element: Atomic # 1 Polarization: -89.30 SS G_CDS: -5.89 Total: -95.19 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -6.51 Total: -4.34 kcal Atomic # 7 Polarization: 47.89 SS G_CDS: -0.66 Total: 47.23 kcal Atomic # 8 Polarization: 3.42 SS G_CDS: -0.43 Total: 2.99 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: -5.16 Total: -9.98 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.48 Total: -4.47 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -42.61 -15.75 -58.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_273584_18081482_17087578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.750 kcal (2) G-P(sol) polarization free energy of solvation -42.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds